Genome BioInformatics Research Lab

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6. GUIDED TOUR
 
 

 
Now, let's go to explore the database services, that is the forms in which the users can query the database about certain information. From the main menu, select the section 2 ACCESS THE DATABASE.

Now, you'll see a menu of five services that ABS offer in this first release. You can notice the availability of a specific help link below each option. If you have any doubt about the behaviour of every option, please consult this short handbooks:




According to the menu above, the following functions to access the collection of binding sites, promoters and genes are available in the first release of ABS:

  1. Explore the catalogue of 650 real TFBSs annotated
    on the orthologous promoters of each gene.


  2. Retrieve all of the binding motifs associated to
    a given TF, filtering by species.


  3. Retrieve all of the promoter sequences in which
    at least one binding site for a given TF was annotated.


  4. Construct artificial datasets based on the ABS annotated TFBSs.

  5. Evaluate the accuracy of a set of predicted TFBSs using
    a list of known binding sites as a reference set.



 
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