Description:
This is a web tool to evaluate the accuracy of motif-finding programs. Both annotations and predictions must be provided in GFF format. The accuracy of the predicted TFBSs in comparison to the annotated TFBSs is measured at nucleotide and site level according to the current standards of evaluation (for further details, see explanation section in the output). A graphical representation of the annotations and predictions is shown at the end.
-- Warning: Use the same sequence names in both files (column 1) --

Paste the KNOWN TF binding sites [GFF format]: SEQUENCE_1 CONSTRUCTOR SRF 13 19 . . . # HS: TATAAAA SEQUENCE_2 CONSTRUCTOR SRF 40 47 . . . # HS: TATTAAAA SEQUENCE_3 CONSTRUCTOR SRF 78 85 . . . # HS: TATTAAAA SEQUENCE_4 CONSTRUCTOR SRF 118 124 . . . # HS: TATAAAT SEQUENCE_3 CONSTRUCTOR TBP 329 336 . . . # HS: TATTAAAA SEQUENCE_4 CONSTRUCTOR TBP 482 488 . . . # HS: TATAAAT ...or upload the file containing the KNOWN TF binding sites [GFF format] Paste the PREDICTED TF binding sites [GFF format]: SEQUENCE_1 MEME motif1 13 19 . . . SEQUENCE_2 MEME motif1 40 47 . . . SEQUENCE_3 MEME motif1 278 285 . . . SEQUENCE_4 MEME motif1 120 126 . . . ...or upload the file containing the PREDICTED TF binding sites [GFF format] Length of Sequences (nucleotides)