Genome BioInformatics Research Lab

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geneid 1.2 Web Server 2005

Paste your FASTA sequence here

... or search a FASTA file to process

Paste your GFF evidences here (Field separator: tab)

... or search a GFF file containing evidences to process

Do you want a graphical representation of the predictions ?
(it might be time consuming depending on the size of the sequence)
Maximum sequence size for plots: 100,000 bps

Prediction Options

Homo sapiens (human)
Drosophila melanogaster (fruit fly)
Tetraodon nigroviridis (puffer fish)
Caenorhabditis elegans (worm)
Dictyostelium discoideum (slime mold)
Plasmodium falciparum (malaria parasite)
Aspergillus nidulans
Neurospora crassa
Cryptococcus neomorfans
Coprinus cinereus
Triticum aestivum (wheat)
Arabidopsis thaliana
Oryza sativa (rice)

Prediction modes:
Normal mode (signal, exon and gene prediction).
Exon mode (only signals and exons, omitting evidences).
Assembling mode (only assembling evidences).

DNA strands:
Forward and Reverse.

Output options

Output format:

Elements to be included in the output:

Signals   Exons
Acceptor sites.   First exons.
Donor sites.   Internal exons.
Start codons.   Terminal exons.
Stop codons.   Single genes.
   Open reading frames
   All exons


To see a dummy example with the form ready to submit, click here.

This example contains the following features:

  • gff format
  • graphical plot
  • all of the signals
  • evidences
  • Normal mode
  • Drosophila melanogaster

About geneid server

geneid server is the web server to geneid, a program to predict genes, exons, splice sites and other signals along a DNA sequence. Visit geneid homepage for more information about this program.

Authors and acknowledgements

Version 1 of geneid has been mostly written by Enrique Blanco and Roderic Guigo.
Profiles and Markov matrices have been computed by Genis Parra.
geneid server written by Enrique Blanco with the always useful help of Moises Burset and Josep F. Abril.

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