REFSEQ

-NM_001100 (human)
-NM_009606 (mouse)
-NM_019212 (rat)

PUBMED

- B. Lenhard, A. Sandelin, L. Mendoza, P. Engström, N. Jareborg and W.W. Wasserman.
"Identification of conserved regulatory elements by comparative genome analysis."
Journal of Biology 2:13 (2003).
[PMID: 12760745]

- W.W. Wasserman and J.W. Fickett.
"Identification of regulatory regions which confer muscle-specific gene expression."
Journal of Molecular Biology 278:167-81 (1998).
[PMID: 9571041]


PROMOTER ANNOTATION

Organism	GenBank Accession	Promoter
Homo sapiens	NM_001100	[500 bps]
Site	Position	Sequence
SRF	262	TCCTTCTTTG
SRF	277	CCATATACGG
SRF	404	CCAAATATGG
TEF1	428	GACATTCCTGCG
SP1	438	GCGGGGTGGCGCG
TBP	471	TATAAA
Mus musculus	X67686	[500 bps]
Site	Position	Sequence
SRF	274	CCATATACGG
SRF	324	TCCTTCTTTG
SRF	405	CCAAATATGG
TEF1	431	AACATTCTTCGG
SP1	439	TCGGGGCGGTGTG
TBP	471	TATAAA
Rattus norvegicus	NM_019212	[500 bps]
Site	Position	Sequence
SRF	269	CCATATACGG
SRF	319	TCCTTCTTTG
SRF	397	CCAAATATGG
TEF1	422	AACATTCCTTCGG
SP1	431	TCGGGGCGGTGTG
TBP	460	TATAAA
Gallus gallus	M13631	[500 bps]
Site	Position	Sequence
SRF	320	CCTTATACGG
SRF	365	CCTTCTTTGG
SRF	410	CCAAATATGG
TBP	471	GATAAA

PREDICTIONS

JASPAR	0.85	0.70	0.85	0.70	0.85	0.70	0.85	0.70
PROMO	0.85	0.70	0.85	0.70	0.85	0.70	0.85	0.70
TRANSFAC	0.85	0.70	0.85	0.70	0.85	0.70	0.85	0.70

DOTPLOT



ALIGNMENTS INFORMATION

GLOBAL alignment

LOCAL alignment

AVID alignment

LAGAN alignment