## date Thu Sep 27 15:31:03 2003
## source-version: geneid v 1.2 -- geneid@imim.es
## Sequence test - Length = 198285 bps
# Exons(x) predicted in sequence test: [0,99999]
Internal    2   59  -10.08  + 0 1  0.40  -6.58  -2.17  0.00  20  IRLFLSVNLLPWHSFLLQF
Internal    2   59   -8.80  + 2 2  0.40  -6.58   1.01  0.00  20  QALSLCKPAPMAFFSASI
Terminal    2   23   -5.55  + 1 0  0.40   0.00  -0.74  0.00   8  SGSFSL*
Terminal    2  115   -6.83  + 0 0  0.40   0.00  -3.92  0.00  38  IRLFLSVNLLPWHSFLLQFSPSLTTHPATHAGNLRY
L*
Terminal    2  144   -5.78  + 2 0  0.40   0.00  -1.30  0.00  48  QALSLCKPAPMAFFSASIQSIPDHPPSHPCWKSEIS
LTPPPSHSHS*
Terminal    3   25   -9.22  - 2 0  0.00  -6.33  -1.04  0.00   8  LQRERA*
Internal    7   59   -9.50  + 0 2 -0.01  -6.58  -0.11  0.00  18  ALSLCKPAPMAFFSASI
Internal    7   59  -10.55  + 1 1 -0.01  -6.58  -2.73  0.00  19  LFLSVNLLPWHSFLLQF
Terminal    7   23   -6.12  + 2 0 -0.01   0.00  -1.55  0.00   6  SFSL*
Terminal    7  115   -7.30  + 1 0 -0.01   0.00  -4.48  0.00  37  LFLSVNLLPWHSFLLQFSPSLTTHPATHAGNLRYL*
Terminal    7  144   -6.47  + 0 0 -0.01   0.00  -2.42  0.00  46  ALSLCKPAPMAFFSASIQSIPDHPPSHPCWKSEISL
TPPPSHSHS*
...

2. gff format

## gff-version 2 ## date Thu Sep 27 15:46:06 2003 ## source-version: geneid v 1.2 -- geneid@imim.es ## Sequence test - Length = 198285 bps # Exons(x) predicted in sequence test: [0,99999] test geneid_v1.2 Internal 2 59 -10.08 + 0 test geneid_v1.2 Internal 2 59 -8.80 + 2 test geneid_v1.2 Terminal 2 23 -5.55 + 1 test geneid_v1.2 Terminal 2 115 -6.83 + 0 test geneid_v1.2 Terminal 2 144 -5.78 + 2 test geneid_v1.2 Terminal 3 25 -9.22 - 2 test geneid_v1.2 Internal 7 59 -9.50 + 0 test geneid_v1.2 Internal 7 59 -10.55 + 1 test geneid_v1.2 Terminal 7 23 -6.12 + 2 test geneid_v1.2 Terminal 7 115 -7.30 + 1 test geneid_v1.2 Terminal 7 144 -6.47 + 0 test geneid_v1.2 First 26 91 -7.08 - 0 test geneid_v1.2 First 26 40 -6.56 - 0 test geneid_v1.2 First 26 35 -6.35 - 0 test geneid_v1.2 Internal 26 140 -7.80 - 1 test geneid_v1.2 Internal 26 67 -8.90 - 0 test geneid_v1.2 First 34 59 -9.51 + 0 test geneid_v1.2 Single 34 144 -6.49 + 0 test geneid_v1.2 Terminal 52 140 -9.19 - 2 test geneid_v1.2 Terminal 52 67 -7.05 - 1 ...

% bin/geneid -GP param/human3iso.param -xo test.fa