gff output format (Description)

Gene extracted from a human prediction (gff format) 
# Gene 2 (Reverse). 3 exons. 493 aa. Score = 25.25
cons.x8bisXs.970911  geneid_v1.2 Terminal 21839 22922  18.37 -  1  gene_2
cons.x8bisXs.970911  geneid_v1.2 Internal 23679 24029   7.99 -  1  gene_2
cons.x8bisXs.970911  geneid_v1.2 First    30732 30775  -1.11 -  0  gene_2


Description of columns (gff format)
Locus DNA Sequence locusname
Source Prediction program which produced this file
Type Type of predicted exon: First, Internal, Terminal or Single
Positions Start and finish positions of current exon
Score Score (reliability) of this exon
Strand Reading sense: forward or reverse
Frame Left uncomplete codon length in this exon
Key Gene identifier


To see more details about gff format, click here



Enrique Blanco Garcia © 2003