geneid docs

geneid output format (Description)

Gene extracted from human Chromosome 22 predictions (geneid format)

# Gene 10 (Forward). 5 exons. 787 aa. Score = 39.46 First 13358069 13358945 18.58 + 0 1 5.78 3.15 45.54 0.00 AA 1:293 gene_10 Internal 13359480 13359693 1.17 + 2 2 -2.83 0.56 18.82 0.00 AA 293:364 gene_10 Internal 13359779 13360175 4.51 + 1 0 0.30 -1.47 26.77 0.00 AA 364:496 gene_10 Internal 13368380 13368662 8.38 + 0 1 3.02 2.87 25.87 0.00 AA 497:591 gene_10 Terminal 13370754 13371343 6.83 + 2 0 6.09 0.00 21.71 0.00 AA 591:787 gene_10 >chr22|geneid_v1.2_predicted_protein_10|787_AA MALHSPQYIFGDFSPDEFNQFFVTPRSSVELPPCSGTVLCGTQAGDKLPDGQEYRRIEFG VNEVIEPSDTLLRTPSYSISSTLNPQAPEFILGCTASKTTPDGITKEASYGSIDQYPGCA LALDGSSSVEAEVLENDGVSGGLGQRERKKKKKQPPGYYSCLKDGGDDSISTEALVNGHA NSAVPNSVSAEDAEFMGDMPPSVTPRTFDSPQNSTDSVSDIVPDSPFPGALGSDTGTAGQ QEGGPGVDFGQSCFPAGAGRDTLSRTAGAQPCVGTDTTENLGVANGQILESSVNKSSLSE KDRQEDAEEYLGFILNGLHEEMLNLKKLLSPNNEKRAISNGPKNQSMKKSKKNKVKEARM NGNKSVVYQQSAKESATLQPFFTLQLDIQSDKIRTVQDALESLVARESVQGYTTKTEQEV EKSRRVTLEKLPPVLVLHLKRFVYEKTGGARSLLNILWTWKLVKNCFLQGLKIRILNATE PIGSLQWSTITATVRRRSVPWLASESPGLPQRPPRPPAAPALTTGPDVPAAAAGSACAMG LPTLEFSDYYLDSPDFRERLQCHQIELERTNKFIKELIKDGSLLTGALRTEQNSTTKSAF CQPREKSGGIPWIATQSSNGQKSLGLWTTNPESSSREDATKTDAESDCQSVASVTSPGDV SPPIDLVKKGPYGLSGLKRASASSLRSISAAEGNISYSGSIQSLTSVGSKETPKASNPDL PPKMCRRLRLDTTSSNGYQRPGSVVAAKAQLFENVGSPKPVSSGHQAKAMYSYKGEHSVS FPSHKE*

Description of columns (geneid format)
Type Type of predicted exon: First, Internal, Terminal or Single
Positions Start and finish positions of current exon
Score Score (reliability) of this exon
Strand Reading sense: forward or reverse
Frame Left uncomplete codon length in this exon
Remainder Right uncomplete codon length in this exon
Partial scores: Scores (log likelihood) from:

Score for both signals defining exon
Protein coding potential (exon content)
Homology information score (blast HSPs): provided by user

AA Amino acids corresponding to the exon translation
Key Gene identifier

Description of columns (geneid format)
Type	Type of predicted exon: First, Internal, Terminal or Single
Positions	Start and finish positions of current exon
Score	Score (reliability) of this exon
Strand	Reading sense: forward or reverse
Frame	Left uncomplete codon length in this exon
Remainder	Right uncomplete codon length in this exon
Partial scores:	Scores (log likelihood) from: Score for both signals defining exon Protein coding potential (exon content) Homology information score (blast HSPs): provided by user
AA	Amino acids corresponding to the exon translation
Key	Gene identifier