Gene extracted from a human prediction (geneid eXtended format) |
# Gene 7 (Reverse). 3 exons. 476 aa. Score = 47.50 Stop 91832 91834 0.00 - ATAA Terminal 91832 92551 30.56 - 0 0 0.00 3.93 84.26 0.00 AA 237:476 gene_7 Acceptor 92551 92552 3.93 - GCGGTGGTGCGGCTGTCCCCGCAGGTG Donor 93982 93983 1.23 - AAGGTATCT Internal 93983 94263 9.83 - 2 0 1.23 2.79 32.30 0.00 AA 143:236 gene_7 Acceptor 94263 94264 2.79 - AGCTGTGAACTGTTTGTTTGCTAGGGT Donor 95208 95209 2.52 - AAGGTAACC First 95209 95635 7.11 - 0 1 2.52 -1.55 30.08 0.00 AA 1:143 gene_7 Start 95633 95635 -1.55 - TTTAGAAAGCTGAGATGATG >L1084|geneid_v1.1_predicted_protein_7|476_AA MMERIRKEMILMERGLHSPTAGKRFSSLSDSAGGAVLEALENSQHPARLSPRLPSAPLHG ALGDLPAKGKFEIDTLFNLQHPSSESTVSSEIASATESRKKPSHYSEAAAEADMSSDVEV GCSALRSPSGLGAAPLKENNAKGYTESGSVAGTTTSASGSGLGSLHGGGGGGNSGAAALG GSGSGSGADQVRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQ NRRMKDKRQRLAMSWPHPADPSFYTYMMTHAAATGSLPYPFHSHVPLHYYPHVGVTAAAA AAAASGAAAAASSPFATSIRPLDTFRALSHPYSRPELLCSFRHPGLYQAPAAAAGLNSAA SAAAAAAAAAAAASSAAAAGAPPSGSSAPCSCLSCHSSQSAAAAAAAAAAALGSRGGGGS GGGGGGGAGTAGGSDFGCSAAAPRSESGFLPYSAAVLSKTAVSPPDQRDEAPLTR* |
Description of columns (geneid eXtended format) | |
Exon type | Type of predicted exon: First, Internal, Terminal or Single |
Signal type | Type of predicted signal: Acceptor, Donor, Start or Stop codon |
Positions | Start and finish positions of current exon and signals |
Score | Score (reliability) of exon and signals |
Strand | Reading sense: forward or reverse |
Frame | Left uncomplete codon length in this exon |
Remainder | Right uncomplete codon length in this exon |
Partial scores (exons): |
Scores (log likelihood) from:
|
AA | Amino acids corresponding to the exon translation |
Key | Gene identifier |
Enrique Blanco Garcia © 2003