## Homology information: HSP or SR
test BLASTN sr 74000 75500 50.000 - .
test BLASTN sr 76000 76500 100.000 - .
test BLASTN sr 78000 79500 50.000 - .
## date Mon Oct 8 10:21:06 2001
## source-version: geneid v 1.1 -- geneid@imim.es
## Sequence test - Length = 198285 bps
# Optimal Gene Structure. 6 genes. Score = 209.270570
# Gene 1 (Forward). 8 exons. 525 aa. Score = 25.246988
Internal 3698 3982 8.69 + 2 1 5.39 1.69 23.61 0.00 AA 1: 96 gene_1
Internal 4612 4890 5.95 + 2 1 3.01 2.36 19.33 0.00 AA 96:189 gene_1
Internal 5102 5230 1.03 + 2 1 0.20 2.06 11.69 0.00 AA 189:232 gene_1
Internal 13675 13737 0.26 + 2 1 2.23 5.66 1.33 0.00 AA 232:253 gene_1
Internal 15525 15806 4.26 + 2 1 5.61 2.81 11.79 0.00 AA 253:347 gene_1
Internal 17034 17318 3.80 + 2 1 5.76 1.67 12.10 0.00 AA 347:442 gene_1
Internal 21599 21618 0.64 + 2 0 4.61 5.66 -0.07 0.00 AA 442:448 gene_1
Terminal 23145 23375 0.61 + 0 0 5.33 0.00 7.28 0.00 AA 449:525 gene_1
>test|geneid_v1.1_predicted_protein_1|525_AA
ctPTPMWPDDLQNHTFLHTVYCQDGSPSVGLSEAYDEDQLFFFDFSQNTRVPRLPEFADW
AQEQGDAPAILFDKEFCEWMIQQIGPKLDGKIPVSRGFPIAEVFTLKPLEFGKPNTLVCF
VSNLFPPMLTVNWQHHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEI
DRYTAIAYWVPRNALPSDLLENVLCGVAFGLGVLGIIVGIVLIIYFRKPCSGEQSMITFL
PLLLGLSLGCTGAGGFVAHVESTCLLDDAGTPKDFTYCISFNKDLLTCWDPEENKMAPCE
FGVLNSLANVLSQHLNQKDTLMQRLRNGLQNCATHTQPFWGSLTNRTRPPSVQVAKTTPF
NTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQPNGDWTYQTLSHLALTPS
YGDTYTCVVEHIGAPEPILRDWRKAVPFQADAGSKKKPGSMGAIQCHAGQHLRQTPGAEV
LRVGPEGQMEDRKYIHNKKEKRQCCGVEREVQNLGFFWPWTMTSA*
# Gene 2 (Reverse). 11 exons. 537 aa. Score = 51.309784
Terminal 26805 26994 0.68 - 1 0 0.00 0.27 15.05 0.00 AA 474:537 gene_2
Internal 47107 47188 -0.31 - 2 2 4.09 1.96 3.90 0.00 AA 447:474 gene_2
Internal 70660 70831 0.57 - 0 1 2.22 0.79 10.66 0.00 AA 390:447 gene_2
Internal 73992 74191 1.63 - 2 0 2.48 -3.18 2.88 6.40 AA 323:389 gene_2
Internal 74475 74801 11.88 - 2 1 -1.55 0.73 17.45 10.89 AA 214:323 gene_2
Internal 74925 75006 -0.62 - 0 1 -5.56 6.63 3.77 2.73 AA 187:214 gene_2
Internal 76083 76212 18.65 - 1 0 -0.38 -6.11 5.24 25.95 AA 143:186 gene_2
Internal 76337 76368 -0.07 - 0 2 -0.89 -0.67 -0.06 6.39 AA 133:143 gene_2
Internal 76398 76516 18.53 - 2 0 -0.67 2.24 6.31 20.56 AA 93:132 gene_2
Internal 77306 77382 -2.88 - 1 1 4.14 -2.09 3.47 0.00 AA 67: 93 gene_2
First 78038 78237 3.25 - 0 2 2.39 -3.03 6.19 6.66 AA 1: 67 gene_2
>test|geneid_v1.1_predicted_protein_2|537_AA
MQDLQAKNYVMLVNDIKEDLFSLYLCGEKYCSWIGRFNIVNMSILPKPIYKFNTIPIKIF
ARFVNYRRVCGYFLRTQKRENQNQRVHEYMCTVLLLLNHFLHVLEELIGIDGQNKNFNIA
ANDRRVSERVPNVKDCMHVCGKEADIGASLTCEKKASFDEKKFSLFLVNTKKCNRNFKGS
RPENVTVRGHYPPLHCFLVPEPDTLAPSLQQQLIFVCWTICRQDVHFIPLLGFFAQLLVD
TPTGMFGRRHHRGSRRGVVLQDPLEGPLRGRGGRHCRVLRLSAQGRCLAWGPRTEGSALA
ETSRQTRSPLKAKAAAPAASEREVQKEVSGRKIAFFTNSELNNGEMEQLGIHRQDNKIKM
KLDLSLTPYAKFNSNWIGLLESRSSRPAWECKNKTVVKVLTKLYEGLGKIEKEKTIENSS
ILITDITDVRDHRLQSSKGSPTRNRPGKTLGFKNDFLEDNEITEIITGITEDS*HRKNIN
GAGTIEHSRAIGGEKDNKEEEKEEQQFNLRLIPSAKIDSIWITNFYAKCKTIKLLE*
# Gene 3 (Reverse). 7 exons. 298 aa. Score = 14.490652
Terminal 78787 79006 6.99 - 1 0 0.00 3.23 8.30 7.23 AA 225:298 gene_3
Internal 79267 79446 0.97 - 1 2 -3.15 -3.00 10.41 6.00 AA 165:225 gene_3
Internal 87121 87151 -1.90 - 2 2 -0.33 5.16 1.76 0.00 AA 155:165 gene_3
Internal 95943 96084 1.53 - 0 1 1.04 1.08 13.14 0.00 AA 108:155 gene_3
Internal 96314 96443 2.43 - 1 0 5.34 4.11 4.41 0.00 AA 64:107 gene_3
Internal 97054 97185 4.67 - 1 2 0.34 2.74 19.56 0.00 AA 20: 64 gene_3
First 98244 98302 -0.20 - 0 2 3.60 1.52 5.57 0.00 AA 1: 20 gene_3
>test|geneid_v1.1_predicted_protein_3|298_AA
MAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQL
ELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGTLGGMLTRQP
FAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDVKFLKQKWFRRKYLGTNSFNEEFYQR
FKEELTPINLFQKIEAEEAFPSLFYKARITSIPKPNNDNGKKRKLNIGVEEIFLYLIKIV
YKNPMVNILDSERLNSFYLKSGTRQECPLSPLLFTVLEVLDSAIGMKKEIKGIQIVK*
# Gene 4 (Forward). 15 exons. 766 aa. Score = 46.549015
First 101952 102061 -1.42 + 0 2 1.16 0.34 6.71 0.00 AA 1: 37 gene_4
Internal 102210 102340 -0.15 + 1 1 4.04 -1.92 8.94 0.00 AA 37: 81 gene_4
Internal 103300 103505 3.34 + 2 0 4.52 4.14 7.86 0.00 AA 81:149 gene_4
Internal 103932 104129 4.76 + 0 0 3.85 -0.04 18.67 0.00 AA 150:215 gene_4
Internal 105331 105459 4.56 + 0 0 5.35 3.92 10.00 0.00 AA 216:258 gene_4
Internal 105609 105797 3.81 + 0 0 5.64 0.78 12.40 0.00 AA 259:321 gene_4
Internal 106357 106530 5.45 + 0 0 3.90 3.52 15.00 0.00 AA 322:379 gene_4
Internal 106774 106936 1.28 + 0 1 3.56 0.52 9.56 0.00 AA 380:434 gene_4
Internal 107245 107381 2.61 + 2 0 3.85 4.71 6.19 0.00 AA 434:479 gene_4
Internal 108664 108840 2.52 + 0 0 4.41 -1.36 14.21 0.00 AA 480:538 gene_4
Internal 111360 111507 1.14 + 0 1 4.01 0.44 8.68 0.00 AA 539:588 gene_4
Internal 111666 111777 4.83 + 2 2 4.40 5.44 9.82 0.00 AA 588:625 gene_4
Internal 112186 112315 4.80 + 1 0 3.55 3.50 13.92 0.00 AA 625:668 gene_4
Internal 112714 112918 6.00 + 0 1 2.72 1.65 20.97 0.00 AA 669:737 gene_4
Terminal 113402 113490 3.02 + 2 0 5.19 0.00 12.26 0.00 AA 737:766 gene_4
>test|geneid_v1.1_predicted_protein_4|766_AA
MAIPFFTGRLTDWILQDGSADTFTRNLTLMSILTIASAVLEFVGDGIYNNTMGHVHSHLQ
GEVFGAVLRQETEFFQQNQTGNIMSRVTEDTSTLSDSLSENLSLFLWYLVRGLCLLGIML
WGSVSLTMVTLITLPLLFLLPKKVGKWYQLLEVQVRESLAKSSQVAIEALSAMPTVRSFA
NEEGEAQKFREKLQEIKTLNQKEAVAYAVNSWTTSISGMLLKVGILYIGGQLVTSGAVSS
GNLVTFVLYQMQFTQAVEVLLSIYPRVQKAVGSSEKIFEYLDRTPRCPPSGLLTPLHLEG
LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ
LLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGA
HSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQV
EQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMPT
EFFQSLGGDGERNVQIEMAHGTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINP
YLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGS
MICGWDKKGPGLYYVDEHGTRLSGNMFSTGSGNTYAYGVMDSGYRPNLSPEEAYDLGRRA
IAYATHRDSYSGGVVNMYHMKEDGWVKVESTDVSDLLHQYREANQ*
# Gene 5 (Forward). 15 exons. 1040 aa. Score = 51.141949
First 116217 116709 1.18 + 0 1 4.46 2.44 5.09 0.00 AA 1:165 gene_5
Internal 116799 116913 4.26 + 2 2 5.85 4.63 7.42 0.00 AA 165:203 gene_5
Internal 117437 117484 0.05 + 1 2 6.31 3.70 -1.13 0.00 AA 203:219 gene_5
Internal 118677 118807 3.22 + 1 1 5.18 3.05 8.20 0.00 AA 219:263 gene_5
Internal 119091 119296 7.73 + 2 0 5.08 4.49 17.47 0.00 AA 263:331 gene_5
Internal 121626 121823 6.17 + 0 0 4.30 3.64 17.26 0.00 AA 332:397 gene_5
Internal 121989 122117 2.09 + 0 0 7.47 4.49 1.03 0.00 AA 398:440 gene_5
Internal 123644 123832 2.08 + 0 0 4.08 0.30 11.14 0.00 AA 441:503 gene_5
Internal 124010 124183 7.03 + 0 0 5.53 3.68 16.25 0.00 AA 504:561 gene_5
Internal 124361 124520 3.46 + 0 1 4.54 1.41 12.22 0.00 AA 562:615 gene_5
Internal 132128 132308 2.65 + 2 2 6.44 3.78 5.05 0.00 AA 615:675 gene_5
Internal 137494 137585 1.72 + 1 1 5.36 5.38 1.95 0.00 AA 675:706 gene_5
Internal 139123 139392 4.46 + 2 1 2.30 4.31 14.99 0.00 AA 706:796 gene_5
Internal 139835 140116 3.25 + 2 1 5.08 -0.18 13.27 0.00 AA 796:890 gene_5
Terminal 150538 150989 1.80 + 2 0 1.12 0.00 16.56 0.00 AA 890:1040 gene_5
>test|geneid_v1.1_predicted_protein_5|1040_AA
MRLPDLRPWTSLLLVDAALLWLLQGPLGTLLPQGLPGLWLEGTLRLGGLWGLLKLRGLLG
FVGTLLLPLCLATPLTVSLRALVAGASRAPPARVASAPWSWLLVGYGAAGLSWSLWAVLS
PPGAQEKEQDQVNNKVLMWRLLKLSRPDLPLLVAAFFFLVLAVLGETLIPHYSGRVIDIL
GGDFDPHAFASAIFFMCLFSFGRHTQTNKLFDKAGTGMSSLSAGCRGGCFTYTMSRINLR
IREQLFSSLLRQDLGFFQETKTGELNSRLSSDTTLMSNWLPLNANVLLRSLVKVVGLYGF
MLSISPRLTLLSLLHMPFTIAAEKVYNTRHQEVLREIQDAVARAGQVVREAVGGLQTVRS
FGAEEHEVCRYKEALEQCRQLYWRRDLERALYLLVRRVLHLGVQMLMLSCGLQQMQDGEL
TQGSLLSFMIYQESVGSYVQTLVYIYGDMLSNVGAAEKVFSYMDRQPNLPSPGTLAPTTL
QGVVKFQDVSFAYPNRPDRPVLKGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG
GQVLLDEKPISQYEHCYLHSQVVSVGQEPVLFSGSVRNNIAYGLQSCEDDKVMAAAQAAH
ADDFIQEMEHGIYTENPLEVHDILNFSGYFLGIMSSNERICGTKHHQHLFFQDEVMDKTI
TGKLRQIVHVKQYFGMGSGWVPWVVALLVNLTRLDSSMTQGTDSPEDFVIQAKADCYFTN
GTEKVQFVVRFIFNLEEYVRFDSDVGMFVALTKLGQPDAEQWNSRLDLLERSRQAVDGVC
RHNYRLGAPFTVGRKVQPEVTVYPERTPLLHQHNLLHCSVTGFYPGDIKIKWFLNGQEER
AGVMSTGPIRNGDWTFQTVVMLEMTPELGHVYTCLVDHSSLLSPVSVEWNAEKSSDKIQH
SFMLKTLDKLVIEGTYVKIVRAIYDKPAANIILNGQNLEAFPLKTGRRQECPLSLLLFNI
VLEVLARAIRQEKRIKSSQIGKEEVKVFLFADDMIIYLENPIVSAQKLLKLINNFSKVSG
YKINVQKLLIFLYTNNSQA*
# Gene 6 (Forward). 6 exons. 314 aa. Score = 20.532181
First 159435 159556 0.89 + 0 2 1.25 6.11 4.94 0.00 AA 1: 41 gene_6
Internal 177915 177947 0.49 + 1 2 5.67 4.44 -0.19 0.00 AA 41: 52 gene_6
Internal 190046 190173 -1.22 + 1 1 2.30 0.25 6.88 0.00 AA 52: 95 gene_6
Internal 192477 192743 17.00 + 2 1 4.16 4.31 42.30 0.00 AA 95:184 gene_6
Internal 195269 195550 1.81 + 2 1 3.07 1.41 11.56 0.00 AA 184:278 gene_6
Internal 196514 196624 1.56 + 2 1 2.68 4.53 5.59 0.00 AA 278:314 gene_6
>test|geneid_v1.1_predicted_protein_6|314_AA
MRDKSSAWPHHQQSCYYNEDEGTEKRGRDGIHQTTVLIHTRDSMTFIHLVPRCTCFMVQG
GFKQLKNLQEKSQQILSLEEHECNTFLHNKESLAKDFLVQFKGMCYFTNGTERVRGVARY
IYNREEYGRFDSDVGEFQAVTELGRSIEDWNNYKDFLEQERAAVDKVCRHNYEAELRTTL
QRQVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTSLIRNG
DWTFQILVMLEITPQRGDIYTCQVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLI
FLGLGLIIRHRGQKag
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