geneid samples: exons
1. geneid (default) format
## date Thu Sep 27 15:31:03 2001
## source-version: geneid v 1.1 -- geneid@imim.es
## Sequence test - Length = 198285 bps
# Exons(x) predicted in sequence test: [0,99999]
Internal    2   59  -10.08  + 0 1  0.40  -6.58  -2.17  0.00  20  IRLFLSVNLLPWHSFLLQF
Internal    2   59   -8.80  + 2 2  0.40  -6.58   1.01  0.00  20  QALSLCKPAPMAFFSASI
Terminal    2   23   -5.55  + 1 0  0.40   0.00  -0.74  0.00   8  SGSFSL*
Terminal    2  115   -6.83  + 0 0  0.40   0.00  -3.92  0.00  38  IRLFLSVNLLPWHSFLLQFSPSLTTHPATHAGNLRY
L*
Terminal    2  144   -5.78  + 2 0  0.40   0.00  -1.30  0.00  48  QALSLCKPAPMAFFSASIQSIPDHPPSHPCWKSEIS
LTPPPSHSHS*
Terminal    3   25   -9.22  - 2 0  0.00  -6.33  -1.04  0.00   8  LQRERA*
Internal    7   59   -9.50  + 0 2 -0.01  -6.58  -0.11  0.00  18  ALSLCKPAPMAFFSASI
Internal    7   59  -10.55  + 1 1 -0.01  -6.58  -2.73  0.00  19  LFLSVNLLPWHSFLLQF
Terminal    7   23   -6.12  + 2 0 -0.01   0.00  -1.55  0.00   6  SFSL*
Terminal    7  115   -7.30  + 1 0 -0.01   0.00  -4.48  0.00  37  LFLSVNLLPWHSFLLQFSPSLTTHPATHAGNLRYL*
Terminal    7  144   -6.47  + 0 0 -0.01   0.00  -2.42  0.00  46  ALSLCKPAPMAFFSASIQSIPDHPPSHPCWKSEISL
TPPPSHSHS*
...
% bin/geneid -P param/human3iso.param -xo test.fa


2. gff format
## gff-version 2
## date Thu Sep 27 15:46:06 2001
## source-version: geneid v 1.1 -- geneid@imim.es
## Sequence test - Length = 198285 bps
# Exons(x) predicted in sequence test: [0,99999]
test    geneid_v1.1     Internal        2       59      -10.08  +       0
test    geneid_v1.1     Internal        2       59      -8.80   +       2
test    geneid_v1.1     Terminal        2       23      -5.55   +       1
test    geneid_v1.1     Terminal        2      115      -6.83   +       0
test    geneid_v1.1     Terminal        2      144      -5.78   +       2
test    geneid_v1.1     Terminal        3       25      -9.22   -       2
test    geneid_v1.1     Internal        7       59      -9.50   +       0
test    geneid_v1.1     Internal        7       59      -10.55  +       1
test    geneid_v1.1     Terminal        7       23      -6.12   +       2
test    geneid_v1.1     Terminal        7      115      -7.30   +       1
test    geneid_v1.1     Terminal        7      144      -6.47   +       0
test    geneid_v1.1     First          26       91      -7.08   -       0
test    geneid_v1.1     First          26       40      -6.56   -       0
test    geneid_v1.1     First          26       35      -6.35   -       0
test    geneid_v1.1     Internal       26      140      -7.80   -       1
test    geneid_v1.1     Internal       26       67      -8.90   -       0
test    geneid_v1.1     First          34       59      -9.51   +       0
test    geneid_v1.1     Single         34      144      -6.49   +       0
test    geneid_v1.1     Terminal       52      140      -9.19   -       2
test    geneid_v1.1     Terminal       52       67      -7.05   -       1    
...
% bin/geneid -GP param/human3iso.param -xo test.fa





Enrique Blanco Garcia © 2001