# geneid parameter file: Solanaceae # Comment lines must begin with '#' # Non-homology penalty NO_SCORE 0 # Number of isochores number_of_isochores 1 # PARAMETERS FROM ISOCHORE 1 # %GC boundaries_of_isochore 0 100 # Exons score: cutoffs Absolute_cutoff_exons -150 -150 -150 -150 Coding_cutoff_oligos -100 -150 -150 -150 # Exon score: factors Site_factor 0.60 0.60 0.60 0.60 Exon_factor 0.40 0.40 0.40 0.40 HSP_factor 1.0 1.0 1.0 1.0 Exon_weigths -4.00 -4.00 -4.00 -4.00 # Site prediction: Position Weight Arrays # Lenght, Offset, Cutoff and order (Markov model) Start_profile 12 2 -5 2 # Transition probabilities at every position 1 AAA 0.193512 1 AAC 0.573955 1 AAG -0.463865 1 AAT -0.716446 1 ACA -1.43186 1 ACC 1.48079 1 ACG -0.0844467 1 ACT -1.54293 1 AGA 0.520456 1 AGC 0.248087 1 AGG -2.55158 1 AGT -0.34181 1 ATA -0.535256 1 ATC 1.01977 1 ATG -1.90415 1 ATT 0.0752144 1 CAA 0.481225 1 CAC -0.104028 1 CAG -0.248424 1 CAT -2.78452 1 CCA -0.565686 1 CCC 0.499958 1 CCG 1.10519 1 CCT -0.263625 1 CGA 0.325516 1 CGC -0.375064 1 CGG 0.73847 1 CGT -1.51401 1 CTA 0.00764918 1 CTC 0.310157 1 CTG 0.211309 1 CTT -0.381691 1 GAA 0.630753 1 GAC -0.245449 1 GAG -2.0667 1 GAT -0.887727 1 GCA 0.587079 1 GCC -0.380686 1 GCG 0.523565 1 GCT -1.15201 1 GGA 0.68282 1 GGC 0.126645 1 GGG -1.42161 1 GGT -1.92611 1 GTA 0.793107 1 GTC -0.0884137 1 GTG -0.560338 1 GTT -1.06268 1 TAA 0.725941 1 TAC -2.28649 1 TAG 0.0546938 1 TAT -0.7852 1 TCA -1.13251 1 TCC 1.46431 1 TCG 0.287006 1 TCT -1.09523 1 TGA 0.236923 1 TGC 0.937973 1 TGG -1.064 1 TGT -1.16306 1 TTA -0.722869 1 TTC -0.361633 1 TTG -0.542096 1 TTT 0.585411 2 AAA 0.53201 2 AAC -0.521524 2 AAG -0.360765 2 AAT -0.842386 2 ACA 0.509015 2 ACC 0.303581 2 ACG -0.198577 2 ACT -2.58612 2 AGA 0.872805 2 AGC -1.75145 2 AGG -0.464432 2 AGT -2.05886 2 ATA 0.610877 2 ATC 0.839552 2 ATG -1.93057 2 ATT -2.13232 2 CAA 0.519818 2 CAC -0.426825 2 CAG -0.275763 2 CAT -0.777918 2 CCA 0.436466 2 CCC 0.347818 2 CCG -0.952973 2 CCT -1.40084 2 CGA -0.474304 2 CGC 0.361613 2 CGG 0.11692 2 CGT 0.21456 2 CTA -0.0480356 2 CTC 0.221161 2 CTG -0.134919 2 CTT -0.00474871 2 GAA 0.689433 2 GAC -0.791256 2 GAG -0.0776943 2 GAT -2.66323 2 GCA -0.115722 2 GCC -1.93694 2 GCG 1.11966 2 GCT 0.115185 2 GGA 0.611578 2 GGC -0.0226456 2 GGG -0.682915 2 GGT -0.826359 2 GTA 0.217623 2 GTC -1.35443 2 GTG 0.293849 2 GTT 0.133215 2 TAA 0.930376 2 TAC -0.845778 2 TAG -0.533957 2 TAT -1.48498 2 TCA 0.525649 2 TCC 0.178109 2 TCG -0.7689 2 TCT -1.46737 2 TGA -0.20147 2 TGC 0.124969 2 TGG 0.0858106 2 TGT 0.0237764 2 TTA 0.702457 2 TTC 0.220352 2 TTG -0.00514673 2 TTT -1.87253 3 AAA 0 3 AAC -9999 3 AAG -9999 3 AAT -9999 3 ACA 0 3 ACC -9999 3 ACG -9999 3 ACT -9999 3 AGA 0 3 AGC -9999 3 AGG -9999 3 AGT -9999 3 ATA 0 3 ATC -9999 3 ATG -9999 3 ATT -9999 3 CAA 0 3 CAC -9999 3 CAG -9999 3 CAT -9999 3 CCA 0 3 CCC -9999 3 CCG -9999 3 CCT -9999 3 CGA 0 3 CGC -9999 3 CGG -9999 3 CGT -9999 3 CTA 0 3 CTC -9999 3 CTG -9999 3 CTT -9999 3 GAA 0 3 GAC -9999 3 GAG -9999 3 GAT -9999 3 GCA 0 3 GCC -9999 3 GCG -9999 3 GCT -9999 3 GGA 0 3 GGC -9999 3 GGG -9999 3 GGT -9999 3 GTA 0 3 GTC -9999 3 GTG -9999 3 GTT -9999 3 TAA 0 3 TAC -9999 3 TAG -9999 3 TAT -9999 3 TCA 0 3 TCC -9999 3 TCG -9999 3 TCT -9999 3 TGA 0 3 TGC -9999 3 TGG -9999 3 TGT -9999 3 TTA 0 3 TTC -9999 3 TTG -9999 3 TTT -9999 4 AAA -9999 4 AAC -9999 4 AAG -9999 4 AAT 0 4 ACA -9999 4 ACC -9999 4 ACG -9999 4 ACT -9999 4 AGA -9999 4 AGC -9999 4 AGG -9999 4 AGT -9999 4 ATA -9999 4 ATC -9999 4 ATG -9999 4 ATT -9999 4 CAA -9999 4 CAC -9999 4 CAG -9999 4 CAT 0 4 CCA -9999 4 CCC -9999 4 CCG -9999 4 CCT -9999 4 CGA -9999 4 CGC -9999 4 CGG -9999 4 CGT -9999 4 CTA -9999 4 CTC -9999 4 CTG -9999 4 CTT -9999 4 GAA -9999 4 GAC -9999 4 GAG -9999 4 GAT 0 4 GCA -9999 4 GCC -9999 4 GCG -9999 4 GCT -9999 4 GGA -9999 4 GGC -9999 4 GGG -9999 4 GGT -9999 4 GTA -9999 4 GTC -9999 4 GTG -9999 4 GTT -9999 4 TAA -9999 4 TAC -9999 4 TAG -9999 4 TAT 0 4 TCA -9999 4 TCC -9999 4 TCG -9999 4 TCT -9999 4 TGA -9999 4 TGC -9999 4 TGG -9999 4 TGT -9999 4 TTA -9999 4 TTC -9999 4 TTG -9999 4 TTT -9999 5 AAA -9999 5 AAC -9999 5 AAG -9999 5 AAT -9999 5 ACA -9999 5 ACC -9999 5 ACG -9999 5 ACT -9999 5 AGA -9999 5 AGC -9999 5 AGG -9999 5 AGT -9999 5 ATA -9999 5 ATC -9999 5 ATG 0 5 ATT -9999 5 CAA -9999 5 CAC -9999 5 CAG -9999 5 CAT -9999 5 CCA -9999 5 CCC -9999 5 CCG -9999 5 CCT -9999 5 CGA -9999 5 CGC -9999 5 CGG -9999 5 CGT -9999 5 CTA -9999 5 CTC -9999 5 CTG -9999 5 CTT -9999 5 GAA -9999 5 GAC -9999 5 GAG -9999 5 GAT -9999 5 GCA -9999 5 GCC -9999 5 GCG -9999 5 GCT -9999 5 GGA -9999 5 GGC -9999 5 GGG -9999 5 GGT -9999 5 GTA -9999 5 GTC -9999 5 GTG -9999 5 GTT -9999 5 TAA -9999 5 TAC -9999 5 TAG -9999 5 TAT -9999 5 TCA -9999 5 TCC -9999 5 TCG -9999 5 TCT -9999 5 TGA -9999 5 TGC -9999 5 TGG -9999 5 TGT -9999 5 TTA -9999 5 TTC -9999 5 TTG -9999 5 TTT -9999 6 AAA -9999 6 AAC -9999 6 AAG -9999 6 AAT -9999 6 ACA -9999 6 ACC -9999 6 ACG -9999 6 ACT -9999 6 AGA -9999 6 AGC -9999 6 AGG -9999 6 AGT -9999 6 ATA -9999 6 ATC -9999 6 ATG -9999 6 ATT -9999 6 CAA -9999 6 CAC -9999 6 CAG -9999 6 CAT -9999 6 CCA -9999 6 CCC -9999 6 CCG -9999 6 CCT -9999 6 CGA -9999 6 CGC -9999 6 CGG -9999 6 CGT -9999 6 CTA -9999 6 CTC -9999 6 CTG -9999 6 CTT -9999 6 GAA -9999 6 GAC -9999 6 GAG -9999 6 GAT -9999 6 GCA -9999 6 GCC -9999 6 GCG -9999 6 GCT -9999 6 GGA -9999 6 GGC -9999 6 GGG -9999 6 GGT -9999 6 GTA -9999 6 GTC -9999 6 GTG -9999 6 GTT -9999 6 TAA -9999 6 TAC -9999 6 TAG -9999 6 TAT -9999 6 TCA -9999 6 TCC -9999 6 TCG -9999 6 TCT -9999 6 TGA -0.999459 6 TGC -0.904163 6 TGG 1.10564 6 TGT -0.707432 6 TTA -9999 6 TTC -9999 6 TTG -9999 6 TTT -9999 7 AAA -9999 7 AAC -9999 7 AAG -9999 7 AAT -9999 7 ACA -9999 7 ACC -9999 7 ACG -9999 7 ACT -9999 7 AGA -9999 7 AGC -9999 7 AGG -9999 7 AGT -9999 7 ATA -9999 7 ATC -9999 7 ATG -9999 7 ATT -9999 7 CAA -9999 7 CAC -9999 7 CAG -9999 7 CAT -9999 7 CCA -9999 7 CCC -9999 7 CCG -9999 7 CCT -9999 7 CGA -9999 7 CGC -9999 7 CGG -9999 7 CGT -9999 7 CTA -9999 7 CTC -9999 7 CTG -9999 7 CTT -9999 7 GAA -0.264473 7 GAC 0.175065 7 GAG 0.445953 7 GAT -0.155486 7 GCA 0.792251 7 GCC -1.74922 7 GCG -0.770818 7 GCT -2.39393 7 GGA -0.331922 7 GGC 1.19648 7 GGG -0.828487 7 GGT -0.899682 7 GTA -1.18445 7 GTC 1.01491 7 GTG -1.01085 7 GTT 0.0659128 7 TAA -9999 7 TAC -9999 7 TAG -9999 7 TAT -9999 7 TCA -9999 7 TCC -9999 7 TCG -9999 7 TCT -9999 7 TGA -9999 7 TGC -9999 7 TGG -9999 7 TGT -9999 7 TTA -9999 7 TTC -9999 7 TTG -9999 7 TTT -9999 8 AAA -1.81809 8 AAC -0.771929 8 AAG 0.908076 8 AAT 0.211638 8 ACA -0.022213 8 ACC -0.654617 8 ACG 1.36535 8 ACT -1.30476 8 AGA -1.71574 8 AGC -0.935711 8 AGG 0.37762 8 AGT 0.701459 8 ATA 0.161635 8 ATC -0.949704 8 ATG 0.92108 8 ATT -1.71892 8 CAA -0.699069 8 CAC 0.00197956 8 CAG 0.511298 8 CAT -0.0169856 8 CCA -0.370451 8 CCC 0.251775 8 CCG 0.78781 8 CCT -0.277144 8 CGA -0.186586 8 CGC 0.229574 8 CGG 0.070826 8 CGT -0.0661397 8 CTA -0.00507112 8 CTC 0.396188 8 CTG -0.0766462 8 CTT -0.217022 8 GAA -0.274531 8 GAC 0.13886 8 GAG 0.635343 8 GAT -0.776739 8 GCA -0.646219 8 GCC -0.238397 8 GCG 0.773511 8 GCT 0.254003 8 GGA -0.538206 8 GGC 0.874944 8 GGG -0.0529295 8 GGT -0.248673 8 GTA -0.406403 8 GTC -1.83539 8 GTG 0.241458 8 GTT 0.347132 8 TAA -0.940213 8 TAC -0.323225 8 TAG -0.260338 8 TAT 0.594016 8 TCA -0.308593 8 TCC -1.74215 8 TCG 1.11165 8 TCT 0.160198 8 TGA -0.841243 8 TGC -0.357926 8 TGG -0.591083 8 TGT 0.715619 8 TTA -1.81343 8 TTC 0.0262586 8 TTG -0.348352 8 TTT 0.539213 9 AAA -0.649567 9 AAC -1.52255 9 AAG 0.93717 9 AAT 0.0281722 9 ACA -0.330178 9 ACC 0.118531 9 ACG 1.52119 9 ACT -1.89262 9 AGA -0.177649 9 AGC 0.0145534 9 AGG 0.0995796 9 AGT 0.121347 9 ATA 0.475511 9 ATC 0.077061 9 ATG -1.79835 9 ATT -0.027485 9 CAA 0.140077 9 CAC 0.544948 9 CAG -0.180992 9 CAT -0.555908 9 CCA -0.422228 9 CCC -1.52268 9 CCG 1.19463 9 CCT -0.00701798 9 CGA 0.29431 9 CGC -1.80513 9 CGG 0.328479 9 CGT -0.361015 9 CTA 0.601062 9 CTC -1.11123 9 CTG -0.0148905 9 CTT -0.14135 9 GAA -1.04399 9 GAC -0.314525 9 GAG -0.408586 9 GAT 0.782995 9 GCA -1.37089 9 GCC 0.855245 9 GCG -0.124952 9 GCT 0.0403729 9 GGA -1.39382 9 GGC 0.939918 9 GGG 0.828253 9 GGT -1.3435 9 GTA 0.0280497 9 GTC 0.573006 9 GTG -1.56373 9 GTT 0.176663 9 TAA -1.34877 9 TAC 0.928757 9 TAG -0.719523 9 TAT 0.193916 9 TCA 0.607469 9 TCC -0.46316 9 TCG 0.165734 9 TCT -1.0438 9 TGA 0.325609 9 TGC -1.63697 9 TGG -0.169087 9 TGT 0.175389 9 TTA 1.11741 9 TTC -1.81278 9 TTG -0.447254 9 TTT -1.0206 10 AAA -0.571973 10 AAC 0.533168 10 AAG -0.0017313 10 AAT 0.223304 10 ACA -0.413216 10 ACC 0.398676 10 ACG 0.808504 10 ACT -0.315975 10 AGA 0.302478 10 AGC -1.2087 10 AGG 0.345622 10 AGT -0.256362 10 ATA -2.01263 10 ATC 1.40314 10 ATG -1.81466 10 ATT -0.125064 10 CAA -0.175547 10 CAC 1.26449 10 CAG -0.782915 10 CAT -1.66982 10 CCA -1.59639 10 CCC 1.16167 10 CCG 1.63761 10 CCT -1.51023 10 CGA -1.96551 10 CGC -0.986085 10 CGG 0.779795 10 CGT 0.396469 10 CTA -1.26354 10 CTC 1.05806 10 CTG -1.03698 10 CTT -0.265014 10 GAA -0.240321 10 GAC 0.985474 10 GAG 0.0204118 10 GAT -0.525265 10 GCA -1.58249 10 GCC -1.05731 10 GCG -0.335646 10 GCT 0.6399 10 GGA 0.358357 10 GGC 0.941872 10 GGG -1.78349 10 GGT -2.44592 10 GTA -2.26252 10 GTC 1.37734 10 GTG -0.378816 10 GTT -0.938736 10 TAA 0.100405 10 TAC 0.589716 10 TAG 0.0945435 10 TAT -0.756438 10 TCA 0.568492 10 TCC -1.0656 10 TCG -0.581804 10 TCT -0.216841 10 TGA 0.142318 10 TGC -1.72313 10 TGG 0.712164 10 TGT -0.496438 10 TTA -0.964408 10 TTC 1.30147 10 TTG -2.42924 10 TTT -0.355692 11 AAA 0.102227 11 AAC 0.858407 11 AAG 0.140532 11 AAT -2.67689 11 ACA -0.558029 11 ACC 0.553777 11 ACG -0.232888 11 ACT 0.199401 11 AGA -2.21016 11 AGC 0.138456 11 AGG 0.424232 11 AGT 0.408452 11 ATA -2.09472 11 ATC 0.0194911 11 ATG 0.638502 11 ATT -0.104951 11 CAA 0.81979 11 CAC -0.889976 11 CAG -1.14314 11 CAT -1.54789 11 CCA -0.0638728 11 CCC -0.512949 11 CCG -0.18409 11 CCT 0.274999 11 CGA -1.32411 11 CGC 1.30282 11 CGG -1.11611 11 CGT 0.266726 11 CTA 0.0037414 11 CTC -1.51954 11 CTG -0.129555 11 CTT 0.395097 11 GAA 0.0457424 11 GAC -1.49699 11 GAG 0.405534 11 GAT -0.149089 11 GCA 0.441623 11 GCC -1.14555 11 GCG -0.618331 11 GCT -0.28384 11 GGA -0.0959947 11 GGC 0.152922 11 GGG -0.0316979 11 GGT 0.0406789 11 GTA 0.156841 11 GTC 0.446625 11 GTG -1.76666 11 GTT 0.298762 11 TAA -0.833118 11 TAC 1.27537 11 TAG -0.381134 11 TAT -1.04343 11 TCA 0.098862 11 TCC -0.180455 11 TCG -0.629969 11 TCT 0.127667 11 TGA -0.852514 11 TGC 1.2342 11 TGG -0.538265 11 TGT -0.91071 11 TTA -2.03533 11 TTC -0.129208 11 TTG 0.750457 11 TTT -0.166367 12 AAA 0.0207176 12 AAC -2.04011 12 AAG -0.643952 12 AAT 0.570069 12 ACA 0.00509563 12 ACC -1.40891 12 ACG 0.74823 12 ACT 0.0468317 12 AGA 0.544207 12 AGC -0.0263179 12 AGG -1.82054 12 AGT -0.311354 12 ATA -1.19363 12 ATC 0.87221 12 ATG 0.583384 12 ATT -1.34046 12 CAA 0.420274 12 CAC -0.86342 12 CAG 0.41382 12 CAT -0.828095 12 CCA 0.275788 12 CCC -0.40497 12 CCG -1.13498 12 CCT 0.120351 12 CGA -1.36098 12 CGC 1.20397 12 CGG -0.724989 12 CGT 0.0975492 12 CTA 0.428395 12 CTC 0.14126 12 CTG -0.127002 12 CTT -0.444163 12 GAA 0.172282 12 GAC -0.72968 12 GAG 0.663465 12 GAT -1.14472 12 GCA 0.3337 12 GCC -1.64108 12 GCG -0.589769 12 GCT 0.31178 12 GGA 0.335138 12 GGC -0.917385 12 GGG -1.04818 12 GGT 0.172534 12 GTA -0.239122 12 GTC 0.598233 12 GTG 0.801733 12 GTT -2.38602 12 TAA -1.26323 12 TAC -0.62148 12 TAG -0.700103 12 TAT 0.673875 12 TCA -0.180581 12 TCC -1.09338 12 TCG 0.968039 12 TCT -0.025075 12 TGA -0.31335 12 TGC -1.91547 12 TGG 0.781945 12 TGT -0.00919452 12 TTA -2.17778 12 TTC 0.176117 12 TTG -0.479954 12 TTT 0.475029 Acceptor_profile 20 16 -7 1 # Transition probabilities at every position 1 AA 0.0600347 1 AC -0.292202 1 AG -0.751301 1 AT 0.359068 1 CA -0.213249 1 CC 0.257761 1 CG -0.257815 1 CT 0.115448 1 GA -0.705256 1 GC 0.158736 1 GG -0.535104 1 GT 0.579498 1 TA -0.055154 1 TC -0.657639 1 TG 0.0313756 1 TT 0.227686 2 AA -0.48235 2 AC 0.379508 2 AG -1.35799 2 AT 0.562342 2 CA -0.488531 2 CC 0.167704 2 CG -0.447463 2 CT 0.351314 2 GA -0.169769 2 GC -0.376487 2 GG -0.460905 2 GT 0.524208 2 TA -0.27169 2 TC -0.0772327 2 TG -0.194211 2 TT 0.270781 3 AA 0.0604492 3 AC -0.469037 3 AG -1.67517 3 AT 0.525404 3 CA 0.0732245 3 CC -0.440116 3 CG -1.12405 3 CT 0.266517 3 GA -0.997252 3 GC -0.285504 3 GG -0.475966 3 GT 0.793388 3 TA -0.145501 3 TC -0.485558 3 TG 0.0286419 3 TT 0.220344 4 AA -0.327666 4 AC -0.131425 4 AG -1.65819 4 AT 0.696113 4 CA -1.0889 4 CC 0.369287 4 CG -0.0343284 4 CT 0.401174 4 GA -0.341922 4 GC 0.207683 4 GG -1.05453 4 GT 0.560491 4 TA -0.425264 4 TC -0.394524 4 TG -0.0585276 4 TT 0.360218 5 AA -0.250168 5 AC 0.193757 5 AG -2.45757 5 AT 0.598081 5 CA -0.393207 5 CC -0.955877 5 CG -0.649409 5 CT 0.614425 5 GA -0.679998 5 GC -0.339593 5 GG 0.00546553 5 GT 0.602056 5 TA -0.391677 5 TC -0.0863041 5 TG -0.120221 5 TT 0.275769 6 AA -0.107641 6 AC -0.112328 6 AG -2.48202 6 AT 0.598706 6 CA -0.500638 6 CC -0.530133 6 CG -0.344841 6 CT 0.550677 6 GA -0.515289 6 GC -0.46871 6 GG -0.839604 6 GT 0.768309 6 TA -0.351169 6 TC 0.187074 6 TG -0.233248 6 TT 0.222941 7 AA -0.155187 7 AC -1.10456 7 AG -2.6596 7 AT 0.828322 7 CA -0.690095 7 CC -0.985012 7 CG 0.10782 7 CT 0.593623 7 GA -0.112902 7 GC -0.891077 7 GG -0.251461 7 GT 0.529394 7 TA -0.320608 7 TC -0.141946 7 TG 0.13613 7 TT 0.159363 8 AA -0.189 8 AC -0.485859 8 AG -4.18468 8 AT 0.718934 8 CA -0.289747 8 CC -1.19575 8 CG -0.750795 8 CT 0.641838 8 GA 0.0198376 8 GC -1.39931 8 GG -0.382953 8 GT 0.559426 8 TA -0.232804 8 TC 0.0147817 8 TG -0.378991 8 TT 0.301018 9 AA -0.18969 9 AC 0.183449 9 AG -2.15675 9 AT 0.536671 9 CA -0.538652 9 CC 0.209196 9 CG -0.146945 9 CT 0.301589 9 GA -0.387734 9 GC -0.310338 9 GG -0.731563 9 GT 0.669605 9 TA -0.278248 9 TC -0.250059 9 TG -0.0496737 9 TT 0.262218 10 AA -0.299643 10 AC -0.398902 10 AG -4.34007 10 AT 0.813026 10 CA -0.0865989 10 CC -0.869285 10 CG -0.786654 10 CT 0.446092 10 GA -0.593644 10 GC -0.317322 10 GG -0.125937 10 GT 0.596345 10 TA -0.469039 10 TC -0.384582 10 TG 0.00884873 10 TT 0.36102 11 AA -0.359401 11 AC -0.550652 11 AG -1.92107 11 AT 0.79809 11 CA -0.302263 11 CC -0.0895709 11 CG -0.724491 11 CT 0.401036 11 GA -0.41644 11 GC 0.216023 11 GG -0.224676 11 GT 0.377244 11 TA -0.677356 11 TC -0.0128143 11 TG -0.140872 11 TT 0.370004 12 AA -1.45054 12 AC -0.831487 12 AG -2.43509 12 AT 1.03937 12 CA -0.808366 12 CC -0.343604 12 CG -1.54143 12 CT 0.678231 12 GA -1.09508 12 GC -0.541673 12 GG -1.27503 12 GT 0.90658 12 TA -0.981312 12 TC -0.802958 12 TG -0.314088 12 TT 0.596967 13 AA 0.206837 13 AC -0.0946486 13 AG -0.614338 13 AT 0.163874 13 CA -0.140709 13 CC -0.626454 13 CG 0.463534 13 CT 0.202351 13 GA 0.275451 13 GC -0.20887 13 GG 0.0418245 13 GT -0.425287 13 TA -0.227671 13 TC -0.823831 13 TG 0.701894 13 TT -0.485943 14 AA -2.07907 14 AC 1.55873 14 AG -4.44896 14 AT 0.17922 14 CA -1.62569 14 CC 1.28975 14 CG -3.03436 14 CT 0.205451 14 GA -2.5584 14 GC 1.46503 14 GG -3.49169 14 GT 0.115675 14 TA -2.88666 14 TC 1.29136 14 TG -4.39622 14 TT -0.0454606 15 AA 0 15 AC -9999 15 AG -9999 15 AT -9999 15 CA 0 15 CC -9999 15 CG -9999 15 CT -9999 15 GA 0 15 GC -9999 15 GG -9999 15 GT -9999 15 TA 0 15 TC -9999 15 TG -9999 15 TT -9999 16 AA -9999 16 AC -9999 16 AG 0 16 AT -9999 16 CA -9999 16 CC -9999 16 CG -9999 16 CT -9999 16 GA -9999 16 GC -9999 16 GG -9999 16 GT -9999 16 TA -9999 16 TC -9999 16 TG -9999 16 TT -9999 17 AA -9999 17 AC -9999 17 AG -9999 17 AT -9999 17 CA -9999 17 CC -9999 17 CG -9999 17 CT -9999 17 GA -0.311871 17 GC -0.537504 17 GG 1.10994 17 GT -1.62691 17 TA -9999 17 TC -9999 17 TG -9999 17 TT -9999 18 AA -0.608188 18 AC -0.270084 18 AG -0.542697 18 AT 0.743275 18 CA 0.121051 18 CC 0.137377 18 CG -0.356482 18 CT -0.137166 18 GA -0.306613 18 GC -0.249132 18 GG -0.191219 18 GT 0.462944 18 TA -0.350307 18 TC 0.258276 18 TG -0.104915 18 TT 0.134025 19 AA -0.0824507 19 AC -0.133919 19 AG -0.545535 19 AT 0.431463 19 CA -0.0748255 19 CC -0.22975 19 CG 0.227785 19 CT 0.104671 19 GA -0.0941216 19 GC -0.0194717 19 GG -0.0338185 19 GT 0.139868 19 TA -0.476113 19 TC -0.341509 19 TG 0.296843 19 TT 0.151553 20 AA -0.124385 20 AC -0.0186412 20 AG 0.00696308 20 AT 0.142839 20 CA -0.248172 20 CC 0.187245 20 CG -0.000485215 20 CT 0.121959 20 GA -0.0642322 20 GC 0.178651 20 GG 0.405013 20 GT -0.622673 20 TA -0.739944 20 TC -0.327102 20 TG 0.781653 20 TT -0.278642 Donor_profile 9 1 -7.5 1 # Transition probabilities at every position 1 AA 0.477592 1 AC 0.140924 1 AG -0.317558 1 AT -0.792414 1 CA 0.619172 1 CC -1.53332 1 CG -0.984788 1 CT -0.450463 1 GA 0.936201 1 GC -1.32769 1 GG -1.94025 1 GT -0.980946 1 TA 0.219014 1 TC -0.188928 1 TG -0.553052 1 TT 0.119464 2 AA -1.45117 2 AC -2.22121 2 AG 1.60082 2 AT -1.82776 2 CA -0.643903 2 CC -1.28049 2 CG 1.46125 2 CT -0.44049 2 GA -0.235292 2 GC -0.149458 2 GG 1.0092 2 GT -1.33066 2 TA -2.12725 2 TC -1.84261 2 TG 1.20923 2 TT -1.13949 3 AA -9999 3 AC -9999 3 AG 0 3 AT -9999 3 CA -9999 3 CC -9999 3 CG 0 3 CT -9999 3 GA -9999 3 GC -9999 3 GG 0 3 GT -9999 3 TA -9999 3 TC -9999 3 TG 0 3 TT -9999 4 AA -9999 4 AC -9999 4 AG -9999 4 AT -9999 4 CA -9999 4 CC -9999 4 CG -9999 4 CT -9999 4 GA -9999 4 GC -9999 4 GG -9999 4 GT 0 4 TA -9999 4 TC -9999 4 TG -9999 4 TT -9999 5 AA -9999 5 AC -9999 5 AG -9999 5 AT -9999 5 CA -9999 5 CC -9999 5 CG -9999 5 CT -9999 5 GA -9999 5 GC -9999 5 GG -9999 5 GT -9999 5 TA 1.02567 5 TC -1.25909 5 TG -0.747371 5 TT -0.737028 6 AA 0.644609 6 AC -0.415626 6 AG -1.86855 6 AT -0.199722 6 CA 0.552584 6 CC -2.58711 6 CG -2.17911 6 CT 0.0418819 6 GA 0.905314 6 GC -0.309624 6 GG -1.47595 6 GT -1.09995 6 TA 0.826243 6 TC -1.26343 6 TG -0.871584 6 TT -0.0883127 7 AA -0.313193 7 AC -1.05598 7 AG 1.14634 7 AT -0.578483 7 CA -1.01557 7 CC 0.0102705 7 CG 1.30755 7 CT -0.14802 7 GA -1.4744 7 GC -2.47292 7 GG 1.28095 7 GT -0.464701 7 TA -0.444259 7 TC -0.789931 7 TG 0.966118 7 TT -0.69302 8 AA -0.531517 8 AC 0.146139 8 AG -0.182374 8 AT 0.418019 8 CA -0.344812 8 CC -0.830197 8 CG -0.3055 8 CT 0.491679 8 GA -0.534327 8 GC -0.354768 8 GG -1.07691 8 GT 0.662629 8 TA -0.430475 8 TC -0.315805 8 TG -0.397866 8 TT 0.44458 9 AA -0.105614 9 AC -0.145321 9 AG -0.163663 9 AT 0.240825 9 CA 0.019359 9 CC -0.15946 9 CG -1.47174 9 CT 0.276785 9 GA 0.324941 9 GC -0.0968624 9 GG -0.779182 9 GT 0.0900585 9 TA 0.110663 9 TC -0.0665066 9 TG -0.76062 9 TT 0.282738 Stop_profile 4 0 -9999 0 # Transition probabilities at every position 1 A 0 1 C 0 1 G 0 1 T 0 2 A -9999 2 C -9999 2 G -9999 2 T 0.000 3 A 0.000 3 C -9999 3 G 0.000 3 T -9999 4 A 0.000 4 C -9999 4 G 0.000 4 T -9999 # Exon prediction: Markov model # Initial probabilities at every codon position Markov_oligo_logs_file 4 Markov_Initial_probability_matrix AAAA 0 0 -0.253682 AAAA 0 1 -0.291495 AAAA 0 2 -0.418958 AAAC 1 0 0.147466 AAAC 1 1 -0.0464333 AAAC 1 2 -0.0774786 AAAG 2 0 0.677865 AAAG 2 1 -0.139336 AAAG 2 2 0.247081 AAAT 3 0 -0.550354 AAAT 3 1 -0.395316 AAAT 3 2 -0.272816 AACA 4 0 0.222449 AACA 4 1 -0.040807 AACA 4 2 0.102809 AACC 5 0 0.271859 AACC 5 1 0.338349 AACC 5 2 -0.149351 AACG 6 0 0.648813 AACG 6 1 -0.152329 AACG 6 2 -0.00571995 AACT 7 0 -0.184596 AACT 7 1 -0.192531 AACT 7 2 0.044066 AAGA 8 0 0.81845 AAGA 8 1 0.845206 AAGA 8 2 -0.127949 AAGC 9 0 0.856621 AAGC 9 1 1.02394 AAGC 9 2 0.132058 AAGG 10 0 1.21824 AAGG 10 1 0.77855 AAGG 10 2 0.151806 AAGT 11 0 -0.230128 AAGT 11 1 0.103981 AAGT 11 2 -0.362479 AATA 12 0 -0.43349 AATA 12 1 -1.01505 AATA 12 2 -0.925966 AATC 13 0 0.212103 AATC 13 1 -0.0646506 AATC 13 2 -0.114165 AATG 14 0 0.757522 AATG 14 1 -0.857738 AATG 14 2 -0.0907441 AATT 15 0 -0.816199 AATT 15 1 -0.735595 AATT 15 2 -0.42544 ACAA 16 0 0.163405 ACAA 16 1 0.477302 ACAA 16 2 0.061511 ACAC 17 0 -0.0405314 ACAC 17 1 0.229388 ACAC 17 2 -0.453063 ACAG 18 0 1.04608 ACAG 18 1 0.399119 ACAG 18 2 0.459746 ACAT 19 0 -0.466901 ACAT 19 1 0.0416748 ACAT 19 2 -0.592438 ACCA 20 0 0.44791 ACCA 20 1 0.203068 ACCA 20 2 0.765446 ACCC 21 0 -0.11765 ACCC 21 1 0.529587 ACCC 21 2 -0.523121 ACCG 22 0 0.833865 ACCG 22 1 0.239157 ACCG 22 2 0.478833 ACCT 23 0 -0.651684 ACCT 23 1 -0.212318 ACCT 23 2 0.155407 ACGA 24 0 0.194068 ACGA 24 1 1.05573 ACGA 24 2 0.0873029 ACGC 25 0 0.272106 ACGC 25 1 0.615054 ACGC 25 2 -0.110886 ACGG 26 0 0.596671 ACGG 26 1 0.983956 ACGG 26 2 -0.449296 ACGT 27 0 -0.238921 ACGT 27 1 0.0655679 ACGT 27 2 -0.173325 ACTA 28 0 -0.0306747 ACTA 28 1 -0.673393 ACTA 28 2 -0.706728 ACTC 29 0 0.209047 ACTC 29 1 -0.0683775 ACTC 29 2 -0.146155 ACTG 30 0 1.0369 ACTG 30 1 -0.227894 ACTG 30 2 -0.307229 ACTT 31 0 -0.549168 ACTT 31 1 -0.31753 ACTT 31 2 -0.174179 AGAA 32 0 -0.269959 AGAA 32 1 0.783293 AGAA 32 2 0.607037 AGAC 33 0 0.0580334 AGAC 33 1 0.531472 AGAC 33 2 0.397124 AGAG 34 0 0.640528 AGAG 34 1 0.417385 AGAG 34 2 0.82912 AGAT 35 0 -0.421175 AGAT 35 1 0.36666 AGAT 35 2 0.81978 AGCA 36 0 0.34657 AGCA 36 1 0.336043 AGCA 36 2 0.917342 AGCC 37 0 0.212106 AGCC 37 1 0.91799 AGCC 37 2 0.768049 AGCG 38 0 0.309076 AGCG 38 1 0.309076 AGCG 38 2 0.633316 AGCT 39 0 -0.212422 AGCT 39 1 0.457558 AGCT 39 2 0.969163 AGGA 40 0 0.289326 AGGA 40 1 1.11289 AGGA 40 2 0.823752 AGGC 41 0 0.348112 AGGC 41 1 1.23833 AGGC 41 2 0.338166 AGGG 42 0 0.568837 AGGG 42 1 0.65922 AGGG 42 2 0.562057 AGGT 43 0 -0.300216 AGGT 43 1 0.435492 AGGT 43 2 0.742516 AGTA 44 0 -0.404216 AGTA 44 1 -0.803489 AGTA 44 2 -0.326564 AGTC 45 0 -0.034235 AGTC 45 1 -0.0519362 AGTC 45 2 0.149548 AGTG 46 0 0.419741 AGTG 46 1 -0.83106 AGTG 46 2 0.253755 AGTT 47 0 -0.786046 AGTT 47 1 -0.253639 AGTT 47 2 0.0215104 ATAA 48 0 -0.758516 ATAA 48 1 -0.201122 ATAA 48 2 -6.0212 ATAC 49 0 -0.696514 ATAC 49 1 -0.307362 ATAC 49 2 -0.313964 ATAG 50 0 -0.116415 ATAG 50 1 -0.274939 ATAG 50 2 -5.36869 ATAT 51 0 -1.30888 ATAT 51 1 -0.572383 ATAT 51 2 -0.740263 ATCA 52 0 0.266915 ATCA 52 1 0.156053 ATCA 52 2 0.0583245 ATCC 53 0 0.049195 ATCC 53 1 0.792531 ATCC 53 2 -0.374822 ATCG 54 0 0.821696 ATCG 54 1 0.450836 ATCG 54 2 0.0853727 ATCT 55 0 -0.693024 ATCT 55 1 -0.160077 ATCT 55 2 -0.195444 ATGA 56 0 0.151478 ATGA 56 1 0.805403 ATGA 56 2 -5.74567 ATGC 57 0 0.210021 ATGC 57 1 0.987598 ATGC 57 2 -0.626227 ATGG 58 0 0.906365 ATGG 58 1 1.07033 ATGG 58 2 0.183837 ATGT 59 0 -0.628195 ATGT 59 1 0.13294 ATGT 59 2 -0.774005 ATTA 60 0 -0.38839 ATTA 60 1 -1.01464 ATTA 60 2 -1.01464 ATTC 61 0 -0.142714 ATTC 61 1 -0.11134 ATTC 61 2 -0.265491 ATTG 62 0 0.589756 ATTG 62 1 -0.958122 ATTG 62 2 -0.417881 ATTT 63 0 -1.14406 ATTT 63 1 -0.663423 ATTT 63 2 -0.939677 CAAA 64 0 -0.0107109 CAAA 64 1 0.478087 CAAA 64 2 0.274493 CAAC 65 0 0.0325121 CAAC 65 1 0.522644 CAAC 65 2 0.461789 CAAG 66 0 0.85249 CAAG 66 1 0.342608 CAAG 66 2 1.06137 CAAT 67 0 -0.380697 CAAT 67 1 0.207702 CAAT 67 2 0.334308 CACA 68 0 -0.217525 CACA 68 1 0.0647055 CACA 68 2 0.128219 CACC 69 0 -0.130794 CACC 69 1 0.8373 CACC 69 2 0.412416 CACG 70 0 0.199993 CACG 70 1 0.147811 CACG 70 2 0.249594 CACT 71 0 -0.785528 CACT 71 1 0.208204 CACT 71 2 0.423624 CAGA 72 0 0.830321 CAGA 72 1 1.24796 CAGA 72 2 0.263535 CAGC 73 0 0.649693 CAGC 73 1 1.52968 CAGC 73 2 0.25579 CAGG 74 0 0.946315 CAGG 74 1 1.15941 CAGG 74 2 0.505872 CAGT 75 0 -0.0766935 CAGT 75 1 0.637244 CAGT 75 2 0.0117176 CATA 76 0 -0.854759 CATA 76 1 -0.728468 CATA 76 2 -0.449296 CATC 77 0 -0.093819 CATC 77 1 0.329747 CATC 77 2 0.21084 CATG 78 0 0.277745 CATG 78 1 -0.252885 CATG 78 2 0.405284 CATT 79 0 -0.854613 CATT 79 1 -0.123981 CATT 79 2 0.0249003 CCAA 80 0 0.660293 CCAA 80 1 0.703134 CCAA 80 2 0.0354663 CCAC 81 0 0.561003 CCAC 81 1 0.412821 CCAC 81 2 -0.162542 CCAG 82 0 1.438 CCAG 82 1 0.0956221 CCAG 82 2 0.655238 CCAT 83 0 0.377655 CCAT 83 1 0.400027 CCAT 83 2 -0.0506957 CCCA 84 0 0.146047 CCCA 84 1 -0.232021 CCCA 84 2 0.440649 CCCC 85 0 -0.795701 CCCC 85 1 -0.196582 CCCC 85 2 -0.332125 CCCG 86 0 0.986135 CCCG 86 1 0.0142761 CCCG 86 2 0.466262 CCCT 87 0 -0.584376 CCCT 87 1 -0.195444 CCCT 87 2 0.486531 CCGA 88 0 0.427843 CCGA 88 1 1.0543 CCGA 88 2 0.107367 CCGC 89 0 -0.0547173 CCGC 89 1 0.602063 CCGC 89 2 0.397269 CCGG 90 0 1.33603 CCGG 90 1 1.25009 CCGG 90 2 0.530968 CCGT 91 0 -0.443756 CCGT 91 1 0.431717 CCGT 91 2 0.220401 CCTA 92 0 0.376643 CCTA 92 1 -0.623366 CCTA 92 2 -0.595583 CCTC 93 0 0.297137 CCTC 93 1 -0.262478 CCTC 93 2 -0.12083 CCTG 94 0 1.28684 CCTG 94 1 -0.927334 CCTG 94 2 -0.547849 CCTT 95 0 -0.217647 CCTT 95 1 -0.489582 CCTT 95 2 -0.288908 CGAA 96 0 0.0540179 CGAA 96 1 0.600559 CGAA 96 2 0.666039 CGAC 97 0 0.391299 CGAC 97 1 0.371889 CGAC 97 2 1.12219 CGAG 98 0 0.675265 CGAG 98 1 0.0933402 CGAG 98 2 0.925491 CGAT 99 0 -0.0926191 CGAT 99 1 0.27629 CGAT 99 2 0.880487 CGCA 100 0 0.154039 CGCA 100 1 -0.273404 CGCA 100 2 0.314381 CGCC 101 0 0.419742 CGCC 101 1 0.743529 CGCC 101 2 0.987727 CGCG 102 0 0.819127 CGCG 102 1 0.101287 CGCG 102 2 0.631915 CGCT 103 0 -0.266625 CGCT 103 1 -0.294024 CGCT 103 2 0.588365 CGGA 104 0 0.021712 CGGA 104 1 1.02723 CGGA 104 2 0.959983 CGGC 105 0 0.0981587 CGGC 105 1 1.08757 CGGC 105 2 0.905249 CGGG 106 0 0.434557 CGGG 106 1 0.968637 CGGG 106 2 0.800017 CGGT 107 0 -0.417654 CGGT 107 1 0.389437 CGGT 107 2 0.959983 CGTA 108 0 0.073117 CGTA 108 1 -0.997323 CGTA 108 2 -0.368715 CGTC 109 0 0.382564 CGTC 109 1 0.253349 CGTC 109 2 0.287253 CGTG 110 0 0.717736 CGTG 110 1 -0.460919 CGTG 110 2 0.43517 CGTT 111 0 -0.205152 CGTT 111 1 -0.0629778 CGTT 111 2 0.200311 CTAA 112 0 -0.591177 CTAA 112 1 0.40458 CTAA 112 2 -5.48152 CTAC 113 0 -0.571582 CTAC 113 1 0.509561 CTAC 113 2 0.11505 CTAG 114 0 -0.116706 CTAG 114 1 0.167152 CTAG 114 2 -4.9919 CTAT 115 0 -0.961591 CTAT 115 1 -0.0632817 CTAT 115 2 -0.283406 CTCA 116 0 0.157749 CTCA 116 1 0.318091 CTCA 116 2 -0.299772 CTCC 117 0 -0.101409 CTCC 117 1 0.690476 CTCC 117 2 -0.310499 CTCG 118 0 0.435828 CTCG 118 1 0.477499 CTCG 118 2 0.051413 CTCT 119 0 -0.717109 CTCT 119 1 -0.157493 CTCT 119 2 -0.264391 CTGA 120 0 -0.0407833 CTGA 120 1 1.31356 CTGA 120 2 -5.10969 CTGC 121 0 -0.370303 CTGC 121 1 1.28014 CTGC 121 2 -0.249939 CTGG 122 0 0.235437 CTGG 122 1 1.51945 CTGG 122 2 0.235437 CTGT 123 0 -0.754579 CTGT 123 1 0.585727 CTGT 123 2 -0.73236 CTTA 124 0 -0.274562 CTTA 124 1 -0.632561 CTTA 124 2 -0.752001 CTTC 125 0 0.222356 CTTC 125 1 0.154836 CTTC 125 2 -0.309304 CTTG 126 0 0.523185 CTTG 126 1 -0.951105 CTTG 126 2 -0.117374 CTTT 127 0 -0.835464 CTTT 127 1 -0.479645 CTTT 127 2 -0.745608 GAAA 128 0 0.526731 GAAA 128 1 -0.244331 GAAA 128 2 0.466451 GAAC 129 0 0.821799 GAAC 129 1 0.165507 GAAC 129 2 0.361983 GAAG 130 0 1.42223 GAAG 130 1 -0.120708 GAAG 130 2 1.1006 GAAT 131 0 0.105568 GAAT 131 1 -0.258806 GAAT 131 2 0.291798 GACA 132 0 0.919616 GACA 132 1 -0.215699 GACA 132 2 0.326409 GACC 133 0 0.625701 GACC 133 1 0.0751642 GACC 133 2 -0.233841 GACG 134 0 1.53575 GACG 134 1 0.343202 GACG 134 2 0.849475 GACT 135 0 0.233094 GACT 135 1 -0.366323 GACT 135 2 0.27276 GAGA 136 0 1.1773 GAGA 136 1 0.555953 GAGA 136 2 0.236561 GAGC 137 0 1.00928 GAGC 137 1 0.559164 GAGC 137 2 0.0973458 GAGG 138 0 1.40322 GAGG 138 1 0.652763 GAGG 138 2 0.398235 GAGT 139 0 0.304059 GAGT 139 1 0.0714363 GAGT 139 2 -0.00267234 GATA 140 0 0.621914 GATA 140 1 -1.16739 GATA 140 2 -0.474244 GATC 141 0 0.905059 GATC 141 1 -0.246606 GATC 141 2 0.184174 GATG 142 0 1.42747 GATG 142 1 -0.616184 GATG 142 2 0.376297 GATT 143 0 0.261953 GATT 143 1 -0.538824 GATT 143 2 0.0495935 GCAA 144 0 1.15745 GCAA 144 1 0.69083 GCAA 144 2 0.348938 GCAC 145 0 0.915825 GCAC 145 1 0.37824 GCAC 145 2 -0.314907 GCAG 146 0 1.5068 GCAG 146 1 0.220027 GCAG 146 2 0.741325 GCAT 147 0 0.251407 GCAT 147 1 0.0222931 GCAT 147 2 -0.490528 GCCA 148 0 1.28064 GCCA 148 1 0.256417 GCCA 148 2 0.888604 GCCC 149 0 0.762687 GCCC 149 1 0.547574 GCCC 149 2 0.434782 GCCG 150 0 1.34551 GCCG 150 1 0.510713 GCCG 150 2 0.419742 GCCT 151 0 0.0331836 GCCT 151 1 -0.265799 GCCT 151 2 0.692039 GCGA 152 0 0.963078 GCGA 152 1 0.737402 GCGA 152 2 -0.0211251 GCGC 153 0 0.104661 GCGC 153 1 0.335184 GCGC 153 2 0.242812 GCGG 154 0 1.33603 GCGG 154 1 0.752445 GCGG 154 2 0.0779916 GCGT 155 0 0.147808 GCGT 155 1 0.126754 GCGT 155 2 0.147808 GCTA 156 0 0.994526 GCTA 156 1 -0.85655 GCTA 156 2 -0.440037 GCTC 157 0 1.00408 GCTC 157 1 -0.0717976 GCTC 157 2 0.140045 GCTG 158 0 1.88702 GCTG 158 1 -0.484352 GCTG 158 2 0.162275 GCTT 159 0 0.251087 GCTT 159 1 -0.281438 GCTT 159 2 0.351892 GGAA 160 0 1.03738 GGAA 160 1 0.495579 GGAA 160 2 0.887216 GGAC 161 0 0.794991 GGAC 161 1 0.189879 GGAC 161 2 0.83704 GGAG 162 0 1.33539 GGAG 162 1 0.210874 GGAG 162 2 1.20442 GGAT 163 0 0.42406 GGAT 163 1 0.113123 GGAT 163 2 0.855059 GGCA 164 0 1.13665 GGCA 164 1 0.3397 GGCA 164 2 1.37377 GGCC 165 0 0.575904 GGCC 165 1 0.62297 GGCC 165 2 0.742029 GGCG 166 0 1.11289 GGCG 166 1 0.0481785 GGCG 166 2 0.977714 GGCT 167 0 0.256543 GGCT 167 1 0.256543 GGCT 167 2 1.33989 GGGA 168 0 0.813737 GGGA 168 1 0.868613 GGGA 168 2 0.777178 GGGC 169 0 0.866756 GGGC 169 1 1.27994 GGGC 169 2 0.76912 GGGG 170 0 0.768049 GGGG 170 1 0.291485 GGGG 170 2 -0.0282851 GGGT 171 0 -0.0813591 GGGT 171 1 0.130974 GGGT 171 2 0.442286 GGTA 172 0 0.639671 GGTA 172 1 -0.899342 GGTA 172 2 -0.334029 GGTC 173 0 0.732792 GGTC 173 1 -0.377453 GGTC 173 2 -0.116437 GGTG 174 0 1.54751 GGTG 174 1 -0.520501 GGTG 174 2 0.499329 GGTT 175 0 0.234537 GGTT 175 1 -0.177442 GGTT 175 2 0.341197 GTAA 176 0 -0.464267 GTAA 176 1 -0.281947 GTAA 176 2 -5.60006 GTAC 177 0 -0.212495 GTAC 177 1 -0.100794 GTAC 177 2 -0.0454425 GTAG 178 0 0.170355 GTAG 178 1 -0.291588 GTAG 178 2 -4.98293 GTAT 179 0 -0.798475 GTAT 179 1 -0.625761 GTAT 179 2 -0.719691 GTCA 180 0 0.426201 GTCA 180 1 0.0185861 GTCA 180 2 -0.0481048 GTCC 181 0 0.116732 GTCC 181 1 0.138952 GTCC 181 2 -0.346552 GTCG 182 0 0.908095 GTCG 182 1 0.301959 GTCG 182 2 0.0994344 GTCT 183 0 -0.718761 GTCT 183 1 -0.203296 GTCT 183 2 -0.238635 GTGA 184 0 0.455458 GTGA 184 1 0.737864 GTGA 184 2 -5.19703 GTGC 185 0 0.257032 GTGC 185 1 0.760312 GTGC 185 2 -0.443659 GTGG 186 0 0.791682 GTGG 186 1 0.854088 GTGG 186 2 -0.0393335 GTGT 187 0 -0.543492 GTGT 187 1 0.0260419 GTGT 187 2 -1.08582 GTTA 188 0 0.070472 GTTA 188 1 -1.05472 GTTA 188 2 -0.805651 GTTC 189 0 0.374792 GTTC 189 1 -0.248087 GTTC 189 2 -0.165848 GTTG 190 0 0.757612 GTTG 190 1 -0.820842 GTTG 190 2 -0.188848 GTTT 191 0 -0.566345 GTTT 191 1 -0.599 GTTT 191 2 -0.463397 TAAA 192 0 -6.16367 TAAA 192 1 -0.695608 TAAA 192 2 -0.277563 TAAC 193 0 -5.45096 TAAC 193 1 -0.530985 TAAC 193 2 -0.0803294 TAAG 194 0 -5.41653 TAAG 194 1 -0.460702 TAAG 194 2 0.391613 TAAT 195 0 -6.24785 TAAT 195 1 -1.10619 TAAT 195 2 -0.334347 TACA 196 0 0.032674 TACA 196 1 -0.535771 TACA 196 2 -0.0444444 TACC 197 0 -0.186393 TACC 197 1 -0.0837421 TACC 197 2 0.121354 TACG 198 0 0.448181 TACG 198 1 -0.641127 TACG 198 2 -0.217312 TACT 199 0 -0.692117 TACT 199 1 -0.94916 TACT 199 2 -0.00230777 TAGA 200 0 -5.43962 TAGA 200 1 0.117209 TAGA 200 2 -0.269133 TAGC 201 0 -4.78974 TAGC 201 1 0.346056 TAGC 201 2 0.0544454 TAGG 202 0 -4.80061 TAGG 202 1 0.148144 TAGG 202 2 0.00340327 TAGT 203 0 -5.70055 TAGT 203 1 -0.689921 TAGT 203 2 -0.417351 TATA 204 0 -1.04217 TATA 204 1 -1.79731 TATA 204 2 -1.07551 TATC 205 0 -0.216406 TATC 205 1 -0.516781 TATC 205 2 -0.143458 TATG 206 0 0.215308 TATG 206 1 -1.30104 TATG 206 2 -0.291462 TATT 207 0 -1.30417 TATT 207 1 -1.34211 TATT 207 2 -0.551647 TCAA 208 0 -0.184393 TCAA 208 1 0.339533 TCAA 208 2 0.122337 TCAC 209 0 -0.0721581 TCAC 209 1 0.276149 TCAC 209 2 -0.262847 TCAG 210 0 0.654977 TCAG 210 1 0.150542 TCAG 210 2 0.523642 TCAT 211 0 -0.607444 TCAT 211 1 -0.0820662 TCAT 211 2 -0.279988 TCCA 212 0 0.0292859 TCCA 212 1 0.00668676 TCCA 212 2 0.664946 TCCC 213 0 -0.627247 TCCC 213 1 0.322445 TCCC 213 2 0.0175818 TCCG 214 0 0.187409 TCCG 214 1 0.303484 TCCG 214 2 0.156153 TCCT 215 0 -0.716384 TCCT 215 1 -0.61194 TCCT 215 2 0.464387 TCGA 216 0 0.0757767 TCGA 216 1 0.669396 TCGA 216 2 0.484748 TCGC 217 0 -0.181032 TCGC 217 1 0.735257 TCGC 217 2 0.262898 TCGG 218 0 0.370951 TCGG 218 1 0.766848 TCGG 218 2 -0.0489024 TCGT 219 0 -0.367997 TCGT 219 1 0.0940439 TCGT 219 2 0.557777 TCTA 220 0 -0.321724 TCTA 220 1 -1.01487 TCTA 220 2 -0.55482 TCTC 221 0 -0.294487 TCTC 221 1 -0.454338 TCTC 221 2 -0.277586 TCTG 222 0 0.517175 TCTG 222 1 -0.861195 TCTG 222 2 -0.291106 TCTT 223 0 -0.970943 TCTT 223 1 -0.779449 TCTT 223 2 -0.20279 TGAA 224 0 -5.89108 TGAA 224 1 0.362739 TGAA 224 2 0.723642 TGAC 225 0 -5.0957 TGAC 225 1 0.113785 TGAC 225 2 0.782035 TGAG 226 0 -5.2553 TGAG 226 1 -0.0403638 TGAG 226 2 1.00045 TGAT 227 0 -5.95443 TGAT 227 1 -0.284549 TGAT 227 2 0.773004 TGCA 228 0 -0.272082 TGCA 228 1 -0.261555 TGCA 228 2 0.714678 TGCC 229 0 -0.131437 TGCC 229 1 0.52578 TGCC 229 2 0.959302 TGCG 230 0 -0.219338 TGCG 230 1 -0.028283 TGCG 230 2 0.686372 TGCT 231 0 -1.0156 TGCT 231 1 -0.157493 TGCT 231 2 1.11547 TGGA 232 0 0.00800797 TGGA 232 1 0.827288 TGGA 232 2 1.04669 TGGC 233 0 0.11929 TGGC 233 1 1.20536 TGGC 233 2 0.967923 TGGG 234 0 0.584212 TGGG 234 1 0.408503 TGGG 234 2 0.8007 TGGT 235 0 -0.721121 TGGT 235 1 0.00279865 TGGT 235 2 0.999733 TGTA 236 0 -1.01249 TGTA 236 1 -1.35582 TGTA 236 2 -0.183676 TGTC 237 0 -0.725859 TGTC 237 1 -0.200702 TGTC 237 2 0.208819 TGTG 238 0 -0.300534 TGTG 238 1 -1.22941 TGTG 238 2 0.150542 TGTT 239 0 -1.37777 TGTT 239 1 -0.673154 TGTT 239 2 0.234739 TTAA 240 0 -1.01572 TTAA 240 1 -0.325193 TTAA 240 2 -6.26799 TTAC 241 0 -0.732532 TTAC 241 1 -0.119427 TTAC 241 2 -0.353042 TTAG 242 0 -0.159365 TTAG 242 1 -0.399317 TTAG 242 2 -5.57546 TTAT 243 0 -1.75108 TTAT 243 1 -0.774686 TTAT 243 2 -0.603539 TTCA 244 0 -0.0760098 TTCA 244 1 -0.328451 TTCA 244 2 -0.222752 TTCC 245 0 -0.247354 TTCC 245 1 0.109321 TTCC 245 2 -0.247354 TTCG 246 0 0.134235 TTCG 246 1 0.379735 TTCG 246 2 -0.21625 TTCT 247 0 -0.858099 TTCT 247 1 -0.515298 TTCT 247 2 -0.360697 TTGA 248 0 -0.181207 TTGA 248 1 0.555684 TTGA 248 2 -6.092 TTGC 249 0 -0.276048 TTGC 249 1 0.710712 TTGC 249 2 -0.50716 TTGG 250 0 0.373159 TTGG 250 1 0.624776 TTGG 250 2 -0.322717 TTGT 251 0 -1.11362 TTGT 251 1 -0.0626354 TTGT 251 2 -0.933241 TTTA 252 0 -0.968482 TTTA 252 1 -1.67328 TTTA 252 2 -1.09596 TTTC 253 0 -1.00331 TTTC 253 1 -0.676546 TTTC 253 2 -0.475243 TTTG 254 0 0.00107428 TTTG 254 1 -1.15276 TTTG 254 2 -0.362805 TTTT 255 0 -1.72797 TTTT 255 1 -1.2128 TTTT 255 2 -1.14745 # Transition probabilities at every codon position Markov_Transition_probability_matrix AAAAA 0 0 -0.122445 AAAAA 0 1 -0.349911 AAAAA 0 2 -0.485714 AAAAC 1 0 0.370786 AAAAC 1 1 0.254905 AAAAC 1 2 0.513902 AAAAG 2 0 0.223811 AAAAG 2 1 0.378091 AAAAG 2 2 0.815712 AAAAT 3 0 -0.175195 AAAAT 3 1 0.0196724 AAAAT 3 2 -0.569995 AAACA 4 0 -0.0342307 AAACA 4 1 -0.111522 AAACA 4 2 0.0479778 AAACC 5 0 0.409477 AAACC 5 1 -0.352135 AAACC 5 2 0.245302 AAACG 6 0 -0.345646 AAACG 6 1 0.102782 AAACG 6 2 -0.0643506 AAACT 7 0 -0.130318 AAACT 7 1 0.20247 AAACT 7 2 -0.180719 AAAGA 8 0 0.161135 AAAGA 8 1 -0.169966 AAAGA 8 2 -0.0154499 AAAGC 9 0 0.437074 AAAGC 9 1 0.282265 AAAGC 9 2 0.355669 AAAGG 10 0 0.104024 AAAGG 10 1 0.365125 AAAGG 10 2 0.604741 AAAGT 11 0 -0.577555 AAAGT 11 1 -0.235964 AAAGT 11 2 -0.908909 AAATA 12 0 -0.459315 AAATA 12 1 -0.569402 AAATA 12 2 -0.621201 AAATC 13 0 0.642223 AAATC 13 1 0.292803 AAATC 13 2 0.364688 AAATG 14 0 -0.350648 AAATG 14 1 0.272569 AAATG 14 2 0.723246 AAATT 15 0 0.180398 AAATT 15 1 0.0785026 AAATT 15 2 -0.54136 AACAA 16 0 0.113984 AACAA 16 1 0.163755 AACAA 16 2 -0.075858 AACAC 17 0 -0.0593464 AACAC 17 1 -0.339466 AACAC 17 2 -0.19728 AACAG 18 0 0.00746845 AACAG 18 1 0.579366 AACAG 18 2 0.904198 AACAT 19 0 -0.107693 AACAT 19 1 -0.422302 AACAT 19 2 -0.513954 AACCA 20 0 -0.0660851 AACCA 20 1 0.264397 AACCA 20 2 0.128173 AACCC 21 0 0.466332 AACCC 21 1 -0.40989 AACCC 21 2 0.0778142 AACCG 22 0 0.0181979 AACCG 22 1 -0.179623 AACCG 22 2 0.608833 AACCT 23 0 -0.328025 AACCT 23 1 -0.0396148 AACCT 23 2 -0.504107 AACGA 24 0 0.222334 AACGA 24 1 0.0548124 AACGA 24 2 -0.280585 AACGC 25 0 -0.530169 AACGC 25 1 0.46671 AACGC 25 2 0.405266 AACGG 26 0 0.443026 AACGG 26 1 -2.09516 AACGG 26 2 0.323185 AACGT 27 0 -0.622696 AACGT 27 1 0.178439 AACGT 27 2 -0.120357 AACTA 28 0 -0.286244 AACTA 28 1 -0.480104 AACTA 28 2 -0.455776 AACTC 29 0 0.375677 AACTC 29 1 0.192557 AACTC 29 2 0.193354 AACTG 30 0 0.122841 AACTG 30 1 0.280788 AACTG 30 2 0.933248 AACTT 31 0 -0.0836569 AACTT 31 1 0.0314392 AACTT 31 2 -0.542554 AAGAA 32 0 0.0872647 AAGAA 32 1 -0.164268 AAGAA 32 2 -0.493509 AAGAC 33 0 0.0745813 AAGAC 33 1 -0.221447 AAGAC 33 2 0.0628442 AAGAG 34 0 -0.0323692 AAGAG 34 1 0.155503 AAGAG 34 2 0.81997 AAGAT 35 0 -0.156453 AAGAT 35 1 0.181865 AAGAT 35 2 -0.271498 AAGCA 36 0 -0.261474 AAGCA 36 1 -0.0986506 AAGCA 36 2 0.0465201 AAGCC 37 0 0.57626 AAGCC 37 1 -0.0715772 AAGCC 37 2 0.244387 AAGCG 38 0 -0.206865 AAGCG 38 1 -0.221991 AAGCG 38 2 0.517701 AAGCT 39 0 -0.0664302 AAGCT 39 1 0.134661 AAGCT 39 2 -0.318993 AAGGA 40 0 0.161634 AAGGA 40 1 0.139874 AAGGA 40 2 0.010443 AAGGC 41 0 0.252228 AAGGC 41 1 -0.454732 AAGGC 41 2 -0.0697579 AAGGG 42 0 -0.149419 AAGGG 42 1 -0.137967 AAGGG 42 2 0.371572 AAGGT 43 0 -0.409171 AAGGT 43 1 0.113692 AAGGT 43 2 -0.333543 AAGTA 44 0 -0.458791 AAGTA 44 1 -0.334328 AAGTA 44 2 -0.233892 AAGTC 45 0 0.459449 AAGTC 45 1 0.0440782 AAGTC 45 2 0.374733 AAGTG 46 0 -0.45755 AAGTG 46 1 0.264777 AAGTG 46 2 0.627582 AAGTT 47 0 0.19545 AAGTT 47 1 0.0350346 AAGTT 47 2 -0.514015 AATAA 48 0 0.169365 AATAA 48 1 -5.31981 AATAA 48 2 -0.146205 AATAC 49 0 0.117753 AATAC 49 1 0.963753 AATAC 49 2 0.152048 AATAG 50 0 -0.017726 AATAG 50 1 -4.65652 AATAG 50 2 0.577406 AATAT 51 0 -0.217291 AATAT 51 1 0.503156 AATAT 51 2 -0.338138 AATCA 52 0 -0.0193333 AATCA 52 1 0.0778331 AATCA 52 2 0.12735 AATCC 53 0 0.509753 AATCC 53 1 -0.0918307 AATCC 53 2 -0.099069 AATCG 54 0 0.239055 AATCG 54 1 0.429734 AATCG 54 2 1.18911 AATCT 55 0 -0.434401 AATCT 55 1 -0.129575 AATCT 55 2 -0.640541 AATGA 56 0 -0.153207 AATGA 56 1 -5.22381 AATGA 56 2 0.0706527 AATGC 57 0 0.369419 AATGC 57 1 0.311219 AATGC 57 2 -0.00982243 AATGG 58 0 0.489476 AATGG 58 1 0.964796 AATGG 58 2 0.640538 AATGT 59 0 -0.483103 AATGT 59 1 0.0300237 AATGT 59 2 -0.716031 AATTA 60 0 -0.445955 AATTA 60 1 -0.376547 AATTA 60 2 -0.0367652 AATTC 61 0 0.829522 AATTC 61 1 0.782723 AATTC 61 2 0.163418 AATTG 62 0 -0.296807 AATTG 62 1 0.213353 AATTG 62 2 0.866684 AATTT 63 0 -0.107079 AATTT 63 1 -0.362037 AATTT 63 2 -0.970199 ACAAA 64 0 0.0971475 ACAAA 64 1 -0.250579 ACAAA 64 2 -0.144941 ACAAC 65 0 0.178726 ACAAC 65 1 -0.00383626 ACAAC 65 2 0.0262925 ACAAG 66 0 -0.0358611 ACAAG 66 1 0.581799 ACAAG 66 2 0.621115 ACAAT 67 0 -0.2497 ACAAT 67 1 -0.249809 ACAAT 67 2 -0.485642 ACACA 68 0 -0.304759 ACACA 68 1 -0.138632 ACACA 68 2 0.107771 ACACC 69 0 0.325023 ACACC 69 1 0.159773 ACACC 69 2 0.249456 ACACG 70 0 -0.202102 ACACG 70 1 0.32193 ACACG 70 2 0.605742 ACACT 71 0 0.113252 ACACT 71 1 -0.0258707 ACACT 71 2 -0.564134 ACAGA 72 0 0.134679 ACAGA 72 1 0.0591932 ACAGA 72 2 0.194312 ACAGC 73 0 0.428865 ACAGC 73 1 0.0496109 ACAGC 73 2 0.0624145 ACAGG 74 0 0.0712618 ACAGG 74 1 0.192472 ACAGG 74 2 0.371396 ACAGT 75 0 -0.601149 ACAGT 75 1 -0.227056 ACAGT 75 2 -0.664156 ACATA 76 0 -0.79014 ACATA 76 1 -0.484044 ACATA 76 2 -0.425852 ACATC 77 0 0.525458 ACATC 77 1 0.274451 ACATC 77 2 0.20223 ACATG 78 0 -0.102767 ACATG 78 1 0.344166 ACATG 78 2 0.610555 ACATT 79 0 0.183577 ACATT 79 1 -0.0998645 ACATT 79 2 -0.449237 ACCAA 80 0 0.19791 ACCAA 80 1 -0.190636 ACCAA 80 2 -0.37178 ACCAC 81 0 0.127906 ACCAC 81 1 -0.0531549 ACCAC 81 2 0.0369804 ACCAG 82 0 0.0742422 ACCAG 82 1 0.647941 ACCAG 82 2 0.940113 ACCAT 83 0 -0.435656 ACCAT 83 1 -0.166858 ACCAT 83 2 -0.391074 ACCCA 84 0 -0.170141 ACCCA 84 1 0.271525 ACCCA 84 2 0.175604 ACCCC 85 0 0.281173 ACCCC 85 1 -0.518738 ACCCC 85 2 -0.327178 ACCCG 86 0 -0.0465557 ACCCG 86 1 0.113295 ACCCG 86 2 0.602534 ACCCT 87 0 -0.125601 ACCCT 87 1 0.0457626 ACCCT 87 2 -0.160869 ACCGA 88 0 0.0173171 ACCGA 88 1 -0.179857 ACCGA 88 2 0.0528293 ACCGC 89 0 -0.329564 ACCGC 89 1 0.624517 ACCGC 89 2 -0.218157 ACCGG 90 0 0.245871 ACCGG 90 1 -0.15155 ACCGG 90 2 0.874443 ACCGT 91 0 -0.064228 ACCGT 91 1 -0.153188 ACCGT 91 2 -1.7982 ACCTA 92 0 0.0453417 ACCTA 92 1 -0.0263003 ACCTA 92 2 -0.26585 ACCTC 93 0 0.184786 ACCTC 93 1 0.0850947 ACCTC 93 2 0.0875541 ACCTG 94 0 -0.743063 ACCTG 94 1 -0.259267 ACCTG 94 2 0.802863 ACCTT 95 0 0.0939579 ACCTT 95 1 0.0667459 ACCTT 95 2 -0.635677 ACGAA 96 0 0.233971 ACGAA 96 1 -0.10047 ACGAA 96 2 -0.0123988 ACGAC 97 0 0.347559 ACGAC 97 1 0.528314 ACGAC 97 2 0.235272 ACGAG 98 0 -0.685194 ACGAG 98 1 0.14553 ACGAG 98 2 0.385363 ACGAT 99 0 -0.0671521 ACGAT 99 1 -0.373624 ACGAT 99 2 -0.564802 ACGCA 100 0 -1.23866 ACGCA 100 1 -0.303941 ACGCA 100 2 -0.321581 ACGCC 101 0 0.584355 ACGCC 101 1 -0.0411546 ACGCC 101 2 -0.373824 ACGCG 102 0 0.553102 ACGCG 102 1 0.605472 ACGCG 102 2 1.15316 ACGCT 103 0 -0.0181555 ACGCT 103 1 0.0166621 ACGCT 103 2 -0.24953 ACGGA 104 0 0.0664156 ACGGA 104 1 -0.067776 ACGGA 104 2 0.327123 ACGGC 105 0 0.104483 ACGGC 105 1 0.0907173 ACGGC 105 2 -0.622615 ACGGG 106 0 0.532743 ACGGG 106 1 0.268694 ACGGG 106 2 0.301054 ACGGT 107 0 -0.515905 ACGGT 107 1 -0.0864273 ACGGT 107 2 -0.468468 ACGTA 108 0 -0.710245 ACGTA 108 1 -1.01473 ACGTA 108 2 -0.251317 ACGTC 109 0 0.45102 ACGTC 109 1 -0.136037 ACGTC 109 2 0.254084 ACGTG 110 0 0.0573204 ACGTG 110 1 0.569594 ACGTG 110 2 0.523386 ACGTT 111 0 0.0387165 ACGTT 111 1 0.0189653 ACGTT 111 2 -0.577713 ACTAA 112 0 0.211742 ACTAA 112 1 -4.98909 ACTAA 112 2 -0.159958 ACTAC 113 0 0.40719 ACTAC 113 1 0.708604 ACTAC 113 2 -0.143751 ACTAG 114 0 -0.227578 ACTAG 114 1 -4.47521 ACTAG 114 2 0.63953 ACTAT 115 0 -0.452853 ACTAT 115 1 0.6199 ACTAT 115 2 -0.317933 ACTCA 116 0 0.149412 ACTCA 116 1 -0.0619276 ACTCA 116 2 0.308068 ACTCC 117 0 0.421256 ACTCC 117 1 0.12097 ACTCC 117 2 -0.29715 ACTCG 118 0 -0.606504 ACTCG 118 1 -0.188502 ACTCG 118 2 0.353118 ACTCT 119 0 -0.295512 ACTCT 119 1 0.035739 ACTCT 119 2 -0.343473 ACTGA 120 0 0.100129 ACTGA 120 1 -4.93586 ACTGA 120 2 -0.0607325 ACTGC 121 0 0.101812 ACTGC 121 1 0.476875 ACTGC 121 2 -0.130062 ACTGG 122 0 0.383556 ACTGG 122 1 0.78636 ACTGG 122 2 0.522987 ACTGT 123 0 -0.548622 ACTGT 123 1 -0.152375 ACTGT 123 2 -0.309427 ACTTA 124 0 0.0358147 ACTTA 124 1 -0.266031 ACTTA 124 2 -0.117166 ACTTC 125 0 0.598537 ACTTC 125 1 0.335768 ACTTC 125 2 0.40523 ACTTG 126 0 -0.751644 ACTTG 126 1 0.262088 ACTTG 126 2 0.45775 ACTTT 127 0 -0.0476796 ACTTT 127 1 -0.279317 ACTTT 127 2 -0.757851 AGAAA 128 0 -0.155157 AGAAA 128 1 -0.107528 AGAAA 128 2 -0.274574 AGAAC 129 0 0.31578 AGAAC 129 1 -0.0985687 AGAAC 129 2 0.212454 AGAAG 130 0 0.359997 AGAAG 130 1 0.495578 AGAAG 130 2 0.671838 AGAAT 131 0 -0.300542 AGAAT 131 1 -0.266056 AGAAT 131 2 -0.520162 AGACA 132 0 0.162578 AGACA 132 1 0.0620679 AGACA 132 2 0.271356 AGACC 133 0 -0.319015 AGACC 133 1 -0.744249 AGACC 133 2 -0.762096 AGACG 134 0 0.667089 AGACG 134 1 0.80456 AGACG 134 2 1.08074 AGACT 135 0 -0.180038 AGACT 135 1 0.0841237 AGACT 135 2 -0.36616 AGAGA 136 0 0.115205 AGAGA 136 1 -0.278637 AGAGA 136 2 0.08589 AGAGC 137 0 0.26127 AGAGC 137 1 0.32487 AGAGC 137 2 -0.108723 AGAGG 138 0 -0.0682639 AGAGG 138 1 0.0945596 AGAGG 138 2 0.527158 AGAGT 139 0 -0.311561 AGAGT 139 1 0.0146755 AGAGT 139 2 -0.816915 AGATA 140 0 -0.562092 AGATA 140 1 -0.458665 AGATA 140 2 -0.23959 AGATC 141 0 0.374682 AGATC 141 1 0.1126 AGATC 141 2 -0.0901953 AGATG 142 0 0.160269 AGATG 142 1 0.304746 AGATG 142 2 0.533712 AGATT 143 0 0.00865791 AGATT 143 1 -0.0117448 AGATT 143 2 -0.327007 AGCAA 144 0 0.316269 AGCAA 144 1 0.0319962 AGCAA 144 2 0.0741234 AGCAC 145 0 0.179278 AGCAC 145 1 -0.199019 AGCAC 145 2 -0.0155419 AGCAG 146 0 -0.0368265 AGCAG 146 1 0.662964 AGCAG 146 2 0.546305 AGCAT 147 0 -0.526576 AGCAT 147 1 -0.541855 AGCAT 147 2 -0.558883 AGCCA 148 0 0.182322 AGCCA 148 1 0.0941575 AGCCA 148 2 0.488219 AGCCC 149 0 0.457101 AGCCC 149 1 0.235723 AGCCC 149 2 -0.0482025 AGCCG 150 0 0.188948 AGCCG 150 1 -0.876313 AGCCG 150 2 0.057158 AGCCT 151 0 -0.62861 AGCCT 151 1 0.0245062 AGCCT 151 2 -0.70498 AGCGA 152 0 0.125262 AGCGA 152 1 -0.30218 AGCGA 152 2 0.220877 AGCGC 153 0 0.138065 AGCGC 153 1 0.0236522 AGCGC 153 2 -1.23215 AGCGG 154 0 0.17966 AGCGG 154 1 -0.25971 AGCGG 154 2 0.537394 AGCGT 155 0 -0.437297 AGCGT 155 1 0.346231 AGCGT 155 2 -0.402166 AGCTA 156 0 -0.384533 AGCTA 156 1 -0.623167 AGCTA 156 2 -0.00266495 AGCTC 157 0 0.332919 AGCTC 157 1 0.0448722 AGCTC 157 2 -0.207219 AGCTG 158 0 -0.233449 AGCTG 158 1 0.17137 AGCTG 158 2 0.79259 AGCTT 159 0 0.133175 AGCTT 159 1 0.172056 AGCTT 159 2 -0.866847 AGGAA 160 0 0.0804889 AGGAA 160 1 0.0335201 AGGAA 160 2 -0.000711044 AGGAC 161 0 0.00978508 AGGAC 161 1 -0.177789 AGGAC 161 2 -0.18087 AGGAG 162 0 -0.0867933 AGGAG 162 1 0.160254 AGGAG 162 2 0.300972 AGGAT 163 0 -0.0369779 AGGAT 163 1 -0.100775 AGGAT 163 2 -0.216064 AGGCA 164 0 -0.0521657 AGGCA 164 1 0.119389 AGGCA 164 2 0.274122 AGGCC 165 0 0.19751 AGGCC 165 1 -0.248565 AGGCC 165 2 -0.0910323 AGGCG 166 0 -0.052425 AGGCG 166 1 -0.470276 AGGCG 166 2 -0.120945 AGGCT 167 0 -0.0521657 AGGCT 167 1 0.14061 AGGCT 167 2 -0.248068 AGGGA 168 0 0.368038 AGGGA 168 1 0.131647 AGGGA 168 2 0.174987 AGGGC 169 0 0.520338 AGGGC 169 1 0.255599 AGGGC 169 2 0.273513 AGGGG 170 0 -0.249741 AGGGG 170 1 -0.128816 AGGGG 170 2 0.556136 AGGGT 171 0 -0.65478 AGGGT 171 1 -0.165003 AGGGT 171 2 -0.967521 AGGTA 172 0 -0.374076 AGGTA 172 1 -0.672859 AGGTA 172 2 -0.444578 AGGTC 173 0 0.085083 AGGTC 173 1 -0.226466 AGGTC 173 2 0.292413 AGGTG 174 0 0.0268095 AGGTG 174 1 0.490718 AGGTG 174 2 0.820709 AGGTT 175 0 0.169469 AGGTT 175 1 0.124015 AGGTT 175 2 -0.575517 AGTAA 176 0 0.0795149 AGTAA 176 1 -4.86355 AGTAA 176 2 0.0756311 AGTAC 177 0 0.25195 AGTAC 177 1 1.06338 AGTAC 177 2 -0.102259 AGTAG 178 0 0.0401547 AGTAG 178 1 -4.48056 AGTAG 178 2 0.440686 AGTAT 179 0 -0.311982 AGTAT 179 1 0.406357 AGTAT 179 2 -0.473597 AGTCA 180 0 0.0620909 AGTCA 180 1 0.168246 AGTCA 180 2 0.377506 AGTCC 181 0 0.395869 AGTCC 181 1 -0.37831 AGTCC 181 2 -0.259626 AGTCG 182 0 0.248533 AGTCG 182 1 -0.280311 AGTCG 182 2 0.783875 AGTCT 183 0 -0.445663 AGTCT 183 1 0.0339818 AGTCT 183 2 -1.03033 AGTGA 184 0 0.118499 AGTGA 184 1 -4.48577 AGTGA 184 2 0.249494 AGTGC 185 0 0.0762829 AGTGC 185 1 0.261813 AGTGC 185 2 0.122367 AGTGG 186 0 0.235073 AGTGG 186 1 0.780802 AGTGG 186 2 0.352466 AGTGT 187 0 -0.361641 AGTGT 187 1 0.0583246 AGTGT 187 2 -0.820639 AGTTA 188 0 -0.238774 AGTTA 188 1 -0.518096 AGTTA 188 2 -0.00817565 AGTTC 189 0 0.524546 AGTTC 189 1 0.278338 AGTTC 189 2 -0.0330116 AGTTG 190 0 -0.228903 AGTTG 190 1 0.262981 AGTTG 190 2 0.624519 AGTTT 191 0 -0.016784 AGTTT 191 1 -0.0564884 AGTTT 191 2 -0.71613 ATAAA 192 0 0.0759885 ATAAA 192 1 -0.235805 ATAAA 192 2 -0.270793 ATAAC 193 0 0.0524488 ATAAC 193 1 0.169225 ATAAC 193 2 0.424789 ATAAG 194 0 0.342859 ATAAG 194 1 0.500663 ATAAG 194 2 0.549303 ATAAT 195 0 -0.297242 ATAAT 195 1 -0.163882 ATAAT 195 2 -0.376885 ATACA 196 0 -0.0275488 ATACA 196 1 0.0970422 ATACA 196 2 0.203309 ATACC 197 0 0.555374 ATACC 197 1 0.0135425 ATACC 197 2 0.241225 ATACG 198 0 -0.239269 ATACG 198 1 -0.411357 ATACG 198 2 0.115775 ATACT 199 0 -0.242532 ATACT 199 1 -0.00669831 ATACT 199 2 -0.403492 ATAGA 200 0 0.0931941 ATAGA 200 1 -0.304937 ATAGA 200 2 -0.187923 ATAGC 201 0 0.488657 ATAGC 201 1 0.286636 ATAGC 201 2 0.520573 ATAGG 202 0 0.366651 ATAGG 202 1 0.445666 ATAGG 202 2 0.56268 ATAGT 203 0 -0.61059 ATAGT 203 1 -0.130926 ATAGT 203 2 -0.488214 ATATA 204 0 -0.464651 ATATA 204 1 -0.716184 ATATA 204 2 -0.828734 ATATC 205 0 0.692312 ATATC 205 1 0.618295 ATATC 205 2 0.273043 ATATG 206 0 0.165499 ATATG 206 1 0.175446 ATATG 206 2 0.893508 ATATT 207 0 -0.0566068 ATATT 207 1 0.124161 ATATT 207 2 -0.353524 ATCAA 208 0 0.186 ATCAA 208 1 0.111851 ATCAA 208 2 0.0387366 ATCAC 209 0 0.220575 ATCAC 209 1 -0.125554 ATCAC 209 2 -0.176249 ATCAG 210 0 -0.0561596 ATCAG 210 1 0.458364 ATCAG 210 2 0.80981 ATCAT 211 0 -0.293351 ATCAT 211 1 -0.351053 ATCAT 211 2 -0.650628 ATCCA 212 0 0.0305984 ATCCA 212 1 0.180858 ATCCA 212 2 -0.0726009 ATCCC 213 0 0.488331 ATCCC 213 1 -0.489656 ATCCC 213 2 -0.147799 ATCCG 214 0 0.161199 ATCCG 214 1 -0.698208 ATCCG 214 2 0.337808 ATCCT 215 0 -0.51519 ATCCT 215 1 0.138768 ATCCT 215 2 0.00975338 ATCGA 216 0 0.0847764 ATCGA 216 1 -0.1052 ATCGA 216 2 0.225475 ATCGC 217 0 0.0623558 ATCGC 217 1 0.173707 ATCGC 217 2 -1.29034 ATCGG 218 0 0.111726 ATCGG 218 1 -0.783081 ATCGG 218 2 0.429676 ATCGT 219 0 -0.223876 ATCGT 219 1 0.279629 ATCGT 219 2 -0.20221 ATCTA 220 0 -0.350164 ATCTA 220 1 -0.606554 ATCTA 220 2 -0.31244 ATCTC 221 0 0.270275 ATCTC 221 1 -0.00393229 ATCTC 221 2 0.091757 ATCTG 222 0 -0.0201719 ATCTG 222 1 0.154212 ATCTG 222 2 0.781533 ATCTT 223 0 0.0608724 ATCTT 223 1 0.218995 ATCTT 223 2 -0.541609 ATGAA 224 0 0.17537 ATGAA 224 1 -0.0526503 ATGAA 224 2 -0.264301 ATGAC 225 0 0.108707 ATGAC 225 1 0.187226 ATGAC 225 2 0.5378 ATGAG 226 0 -0.0984858 ATGAG 226 1 0.0729437 ATGAG 226 2 0.330606 ATGAT 227 0 -0.196931 ATGAT 227 1 -0.0804371 ATGAT 227 2 -0.332863 ATGCA 228 0 -0.161278 ATGCA 228 1 -0.253936 ATGCA 228 2 0.0606046 ATGCC 229 0 0.550648 ATGCC 229 1 0.0507062 ATGCC 229 2 0.545509 ATGCG 230 0 -0.260284 ATGCG 230 1 -0.229402 ATGCG 230 2 0.380216 ATGCT 231 0 -0.102195 ATGCT 231 1 0.255884 ATGCT 231 2 -0.671291 ATGGA 232 0 0.133403 ATGGA 232 1 0.132025 ATGGA 232 2 -0.150512 ATGGC 233 0 0.693951 ATGGC 233 1 -0.0320336 ATGGC 233 2 -0.0109549 ATGGG 234 0 -0.0308575 ATGGG 234 1 -0.0412125 ATGGG 234 2 0.883382 ATGGT 235 0 -0.789971 ATGGT 235 1 -0.118743 ATGGT 235 2 -0.638528 ATGTA 236 0 -0.51225 ATGTA 236 1 -0.412881 ATGTA 236 2 -0.335901 ATGTC 237 0 0.882354 ATGTC 237 1 0.340527 ATGTC 237 2 0.154992 ATGTG 238 0 -0.416424 ATGTG 238 1 -0.0619975 ATGTG 238 2 0.531731 ATGTT 239 0 -0.021418 ATGTT 239 1 0.126098 ATGTT 239 2 -0.321679 ATTAA 240 0 0.0599706 ATTAA 240 1 -5.27736 ATTAA 240 2 -0.0146652 ATTAC 241 0 0.423109 ATTAC 241 1 0.836549 ATTAC 241 2 0.25192 ATTAG 242 0 -0.0628224 ATTAG 242 1 -4.65692 ATTAG 242 2 0.907598 ATTAT 243 0 -0.2686 ATTAT 243 1 0.456499 ATTAT 243 2 -1.15294 ATTCA 244 0 -0.0795621 ATTCA 244 1 0.101559 ATTCA 244 2 0.360818 ATTCC 245 0 0.524588 ATTCC 245 1 0.039217 ATTCC 245 2 -0.242951 ATTCG 246 0 0.417527 ATTCG 246 1 0.137452 ATTCG 246 2 0.611128 ATTCT 247 0 -0.364159 ATTCT 247 1 -0.140383 ATTCT 247 2 -0.546519 ATTGA 248 0 0.0912468 ATTGA 248 1 -5.17322 ATTGA 248 2 -0.0197251 ATTGC 249 0 0.324896 ATTGC 249 1 0.270444 ATTGC 249 2 0.00676536 ATTGG 250 0 0.28882 ATTGG 250 1 0.90258 ATTGG 250 2 0.940675 ATTGT 251 0 -0.485428 ATTGT 251 1 0.169607 ATTGT 251 2 -0.901689 ATTTA 252 0 -0.489438 ATTTA 252 1 -0.445542 ATTTA 252 2 -0.185752 ATTTC 253 0 0.483146 ATTTC 253 1 0.434897 ATTTC 253 2 0.173802 ATTTG 254 0 -0.117054 ATTTG 254 1 0.428371 ATTTG 254 2 0.809787 ATTTT 255 0 0.0136587 ATTTT 255 1 -0.295014 ATTTT 255 2 -0.761594 CAAAA 256 0 0.00290967 CAAAA 256 1 -0.22691 CAAAA 256 2 -0.0522478 CAAAC 257 0 0.186704 CAAAC 257 1 -0.120532 CAAAC 257 2 -0.0984966 CAAAG 258 0 -0.0937556 CAAAG 258 1 0.49863 CAAAG 258 2 0.723101 CAAAT 259 0 -0.0531582 CAAAT 259 1 -0.0771083 CAAAT 259 2 -0.658529 CAACA 260 0 0.00140909 CAACA 260 1 0.0142906 CAACA 260 2 -0.0661448 CAACC 261 0 0.24573 CAACC 261 1 -0.0164689 CAACC 261 2 -0.035125 CAACG 262 0 0.0893928 CAACG 262 1 -0.249508 CAACG 262 2 1.01004 CAACT 263 0 -0.12788 CAACT 263 1 0.029025 CAACT 263 2 -0.249294 CAAGA 264 0 0.285475 CAAGA 264 1 0.170313 CAAGA 264 2 0.198394 CAAGC 265 0 0.263868 CAAGC 265 1 0.137764 CAAGC 265 2 0.0269173 CAAGG 266 0 0.162376 CAAGG 266 1 0.163642 CAAGG 266 2 0.590265 CAAGT 267 0 -0.596947 CAAGT 267 1 -0.329759 CAAGT 267 2 -0.805823 CAATA 268 0 -0.28593 CAATA 268 1 -0.471301 CAATA 268 2 -0.200608 CAATC 269 0 0.536975 CAATC 269 1 0.139627 CAATC 269 2 -0.140466 CAATG 270 0 -0.0667306 CAATG 270 1 0.380961 CAATG 270 2 0.963503 CAATT 271 0 -0.121284 CAATT 271 1 -0.0342007 CAATT 271 2 -0.805635 CACAA 272 0 0.377643 CACAA 272 1 0.186038 CACAA 272 2 0.09322 CACAC 273 0 -0.150292 CACAC 273 1 -0.432525 CACAC 273 2 -0.419807 CACAG 274 0 -0.0721437 CACAG 274 1 0.66465 CACAG 274 2 1.05097 CACAT 275 0 -0.356257 CACAT 275 1 -0.338114 CACAT 275 2 -0.702001 CACCA 276 0 -0.0526653 CACCA 276 1 0.498733 CACCA 276 2 0.436047 CACCC 277 0 0.157491 CACCC 277 1 -1.162 CACCC 277 2 -0.888345 CACCG 278 0 0.491108 CACCG 278 1 0.119834 CACCG 278 2 0.884394 CACCT 279 0 -0.244742 CACCT 279 1 -0.180912 CACCT 279 2 -0.629199 CACGA 280 0 0.123123 CACGA 280 1 0.473802 CACGA 280 2 -0.190287 CACGC 281 0 0.00105994 CACGC 281 1 -0.920203 CACGC 281 2 -0.358688 CACGG 282 0 0.464873 CACGG 282 1 -0.349754 CACGG 282 2 0.75588 CACGT 283 0 -0.492093 CACGT 283 1 0.0324528 CACGT 283 2 -0.337592 CACTA 284 0 -0.486405 CACTA 284 1 -0.395224 CACTA 284 2 -0.102584 CACTC 285 0 0.327387 CACTC 285 1 0.341293 CACTC 285 2 -0.111926 CACTG 286 0 0.291722 CACTG 286 1 -0.503835 CACTG 286 2 0.890184 CACTT 287 0 -0.0584224 CACTT 287 1 0.199387 CACTT 287 2 -0.746549 CAGAA 288 0 0.105454 CAGAA 288 1 -0.171161 CAGAA 288 2 -0.304884 CAGAC 289 0 -0.278232 CAGAC 289 1 -0.571674 CAGAC 289 2 -0.615415 CAGAG 290 0 -0.0622773 CAGAG 290 1 0.222992 CAGAG 290 2 0.835365 CAGAT 291 0 0.0145305 CAGAT 291 1 0.311218 CAGAT 291 2 -0.139449 CAGCA 292 0 -0.0894966 CAGCA 292 1 0.278348 CAGCA 292 2 0.383918 CAGCC 293 0 0.410353 CAGCC 293 1 -0.38068 CAGCC 293 2 0.0553167 CAGCG 294 0 -0.500239 CAGCG 294 1 -0.172805 CAGCG 294 2 -0.254755 CAGCT 295 0 -0.0504395 CAGCT 295 1 -0.0751071 CAGCT 295 2 -0.363868 CAGGA 296 0 0.104185 CAGGA 296 1 0.160364 CAGGA 296 2 0.223489 CAGGC 297 0 0.554019 CAGGC 297 1 -0.111056 CAGGC 297 2 0.178977 CAGGG 298 0 -0.0609417 CAGGG 298 1 -0.0178631 CAGGG 298 2 -0.00787665 CAGGT 299 0 -0.591115 CAGGT 299 1 -0.135157 CAGGT 299 2 -0.460823 CAGTA 300 0 -0.51179 CAGTA 300 1 -0.378432 CAGTA 300 2 -0.134837 CAGTC 301 0 0.395788 CAGTC 301 1 -0.0334126 CAGTC 301 2 0.353365 CAGTG 302 0 -0.362503 CAGTG 302 1 0.346076 CAGTG 302 2 0.700904 CAGTT 303 0 0.239337 CAGTT 303 1 0.0410321 CAGTT 303 2 -0.67518 CATAA 304 0 0.0205184 CATAA 304 1 -4.86795 CATAA 304 2 0.214171 CATAC 305 0 0.233815 CATAC 305 1 0.654067 CATAC 305 2 -0.121003 CATAG 306 0 -0.179613 CATAG 306 1 -4.34896 CATAG 306 2 0.375819 CATAT 307 0 -0.0427964 CATAT 307 1 0.545046 CATAT 307 2 -0.355711 CATCA 308 0 -0.0825384 CATCA 308 1 0.240502 CATCA 308 2 0.359407 CATCC 309 0 0.471003 CATCC 309 1 -0.459259 CATCC 309 2 0.00492017 CATCG 310 0 0.477196 CATCG 310 1 -0.627249 CATCG 310 2 0.540256 CATCT 311 0 -0.372695 CATCT 311 1 0.0374194 CATCT 311 2 -0.653966 CATGA 312 0 0.215396 CATGA 312 1 -5.0378 CATGA 312 2 0.0629324 CATGC 313 0 0.0120612 CATGC 313 1 -0.18453 CATGC 313 2 0.010248 CATGG 314 0 0.703 CATGG 314 1 1.18829 CATGG 314 2 0.775628 CATGT 315 0 -0.825793 CATGT 315 1 -0.295165 CATGT 315 2 -0.731226 CATTA 316 0 -0.600606 CATTA 316 1 -0.136898 CATTA 316 2 -0.0502625 CATTC 317 0 0.341153 CATTC 317 1 0.0930449 CATTC 317 2 -0.0948625 CATTG 318 0 -0.168732 CATTG 318 1 0.576913 CATTG 318 2 1.07098 CATTT 319 0 0.132902 CATTT 319 1 -0.277746 CATTT 319 2 -0.955546 CCAAA 320 0 0.157267 CCAAA 320 1 -0.263587 CCAAA 320 2 0.011143 CCAAC 321 0 0.000159595 CCAAC 321 1 0.0877338 CCAAC 321 2 -0.444207 CCAAG 322 0 -0.19825 CCAAG 322 1 0.517889 CCAAG 322 2 0.845755 CCAAT 323 0 -0.122766 CCAAT 323 1 -0.179167 CCAAT 323 2 -0.95756 CCACA 324 0 -0.286287 CCACA 324 1 -0.371418 CCACA 324 2 -0.0246854 CCACC 325 0 0.702271 CCACC 325 1 -0.0753172 CCACC 325 2 0.0801914 CCACG 326 0 -0.346707 CCACG 326 1 0.102231 CCACG 326 2 0.677591 CCACT 327 0 -0.266083 CCACT 327 1 0.277883 CCACT 327 2 -0.461723 CCAGA 328 0 0.289016 CCAGA 328 1 -0.257805 CCAGA 328 2 0.269428 CCAGC 329 0 0.390113 CCAGC 329 1 0.409641 CCAGC 329 2 0.354271 CCAGG 330 0 -0.172839 CCAGG 330 1 -0.114794 CCAGG 330 2 0.0488902 CCAGT 331 0 -0.522546 CCAGT 331 1 0.0252635 CCAGT 331 2 -0.679182 CCATA 332 0 -0.459296 CCATA 332 1 -0.625803 CCATA 332 2 -0.380931 CCATC 333 0 0.379499 CCATC 333 1 0.10178 CCATC 333 2 0.100519 CCATG 334 0 0.0571258 CCATG 334 1 0.311178 CCATG 334 2 0.731245 CCATT 335 0 0.0266319 CCATT 335 1 0.076363 CCATT 335 2 -0.625112 CCCAA 336 0 0.137467 CCCAA 336 1 -0.172224 CCCAA 336 2 0.123767 CCCAC 337 0 -0.513266 CCCAC 337 1 -0.749573 CCCAC 337 2 -0.0283968 CCCAG 338 0 -0.578514 CCCAG 338 1 0.54313 CCCAG 338 2 0.334297 CCCAT 339 0 0.292988 CCCAT 339 1 0.306156 CCCAT 339 2 -0.403902 CCCCA 340 0 -0.273505 CCCCA 340 1 0.131582 CCCCA 340 2 0.0464557 CCCCC 341 0 -0.261236 CCCCC 341 1 -1.42675 CCCCC 341 2 -1.50251 CCCCG 342 0 0.798549 CCCCG 342 1 0.443058 CCCCG 342 2 1.45632 CCCCT 343 0 0.135882 CCCCT 343 1 0.394785 CCCCT 343 2 -0.187109 CCCGA 344 0 0.303375 CCCGA 344 1 0.334845 CCCGA 344 2 0.343676 CCCGC 345 0 -0.258093 CCCGC 345 1 -0.34484 CCCGC 345 2 -0.411168 CCCGG 346 0 0.546013 CCCGG 346 1 0.0606275 CCCGG 346 2 0.745718 CCCGT 347 0 -0.491172 CCCGT 347 1 -0.142499 CCCGT 347 2 -0.708895 CCCTA 348 0 -0.213097 CCCTA 348 1 -0.174586 CCCTA 348 2 -0.294876 CCCTC 349 0 0.163056 CCCTC 349 1 -0.065538 CCCTC 349 2 -1.17167 CCCTG 350 0 -0.544691 CCCTG 350 1 -0.547965 CCCTG 350 2 1.38307 CCCTT 351 0 0.118383 CCCTT 351 1 0.222415 CCCTT 351 2 -0.396713 CCGAA 352 0 0.499782 CCGAA 352 1 0.00574996 CCGAA 352 2 -0.0153144 CCGAC 353 0 -0.329687 CCGAC 353 1 0.020369 CCGAC 353 2 -0.543294 CCGAG 354 0 0.00960484 CCGAG 354 1 -0.127304 CCGAG 354 2 0.461411 CCGAT 355 0 -0.522993 CCGAT 355 1 0.0646729 CCGAT 355 2 -0.202524 CCGCA 356 0 -0.36711 CCGCA 356 1 -0.131891 CCGCA 356 2 -0.324395 CCGCC 357 0 0.6774 CCGCC 357 1 0.0206209 CCGCC 357 2 -0.621885 CCGCG 358 0 -0.506369 CCGCG 358 1 -0.315851 CCGCG 358 2 1.07853 CCGCT 359 0 -0.218687 CCGCT 359 1 0.199889 CCGCT 359 2 -0.231306 CCGGA 360 0 0.447697 CCGGA 360 1 -0.122602 CCGGA 360 2 -0.804374 CCGGC 361 0 0.116075 CCGGC 361 1 -0.118149 CCGGC 361 2 0.241598 CCGGG 362 0 0.0800379 CCGGG 362 1 0.10247 CCGGG 362 2 0.885106 CCGGT 363 0 -0.633429 CCGGT 363 1 0.0782213 CCGGT 363 2 -0.565963 CCGTA 364 0 -0.791065 CCGTA 364 1 -0.339665 CCGTA 364 2 -0.128353 CCGTC 365 0 0.140493 CCGTC 365 1 0.112324 CCGTC 365 2 -0.409259 CCGTG 366 0 -0.348451 CCGTG 366 1 0.172327 CCGTG 366 2 0.717276 CCGTT 367 0 0.379101 CCGTT 367 1 -0.0391253 CCGTT 367 2 -0.712503 CCTAA 368 0 0.288574 CCTAA 368 1 -4.47032 CCTAA 368 2 0.0345012 CCTAC 369 0 0.0220434 CCTAC 369 1 1.07724 CCTAC 369 2 0.0158097 CCTAG 370 0 -0.136787 CCTAG 370 1 -4.05676 CCTAG 370 2 0.25927 CCTAT 371 0 -0.302211 CCTAT 371 1 0.411997 CCTAT 371 2 -0.272027 CCTCA 372 0 0.210973 CCTCA 372 1 0.229458 CCTCA 372 2 0.381879 CCTCC 373 0 0.255425 CCTCC 373 1 -0.37739 CCTCC 373 2 0.0240469 CCTCG 374 0 0.164567 CCTCG 374 1 -0.0697692 CCTCG 374 2 0.686523 CCTCT 375 0 -0.444595 CCTCT 375 1 0.0413686 CCTCT 375 2 -0.762076 CCTGA 376 0 0.18734 CCTGA 376 1 -3.74052 CCTGA 376 2 0.495107 CCTGC 377 0 -0.0995846 CCTGC 377 1 0.608805 CCTGC 377 2 -0.334153 CCTGG 378 0 0.596973 CCTGG 378 1 0.613923 CCTGG 378 2 0.516999 CCTGT 379 0 -0.731696 CCTGT 379 1 -0.237669 CCTGT 379 2 -1.11186 CCTTA 380 0 -0.482402 CCTTA 380 1 0.0181629 CCTTA 380 2 -0.182508 CCTTC 381 0 0.650348 CCTTC 381 1 0.125206 CCTTC 381 2 0.301013 CCTTG 382 0 -0.104153 CCTTG 382 1 0.134164 CCTTG 382 2 0.688772 CCTTT 383 0 -0.0991716 CCTTT 383 1 -0.127513 CCTTT 383 2 -0.602135 CGAAA 384 0 -0.0163662 CGAAA 384 1 -0.258048 CGAAA 384 2 -0.0902181 CGAAC 385 0 0.0520657 CGAAC 385 1 -0.730867 CGAAC 385 2 -0.0282945 CGAAG 386 0 0.02225 CGAAG 386 1 0.563331 CGAAG 386 2 0.641689 CGAAT 387 0 -0.0284399 CGAAT 387 1 0.0662783 CGAAT 387 2 -0.640462 CGACA 388 0 -0.0378102 CGACA 388 1 -0.595283 CGACA 388 2 0.139337 CGACC 389 0 0.361145 CGACC 389 1 -1.02478 CGACC 389 2 -0.843527 CGACG 390 0 0.548313 CGACG 390 1 1.24727 CGACG 390 2 1.0023 CGACT 391 0 -0.495633 CGACT 391 1 0.0609287 CGACT 391 2 -0.458472 CGAGA 392 0 -0.0559121 CGAGA 392 1 0.106157 CGAGA 392 2 0.2384 CGAGC 393 0 0.20776 CGAGC 393 1 0.107706 CGAGC 393 2 0.08402 CGAGG 394 0 -0.123948 CGAGG 394 1 0.210563 CGAGG 394 2 0.0975376 CGAGT 395 0 -0.00724535 CGAGT 395 1 -0.331032 CGAGT 395 2 -0.377914 CGATA 396 0 -0.235847 CGATA 396 1 -0.768382 CGATA 396 2 -0.487899 CGATC 397 0 0.382685 CGATC 397 1 0.183194 CGATC 397 2 -0.232214 CGATG 398 0 -0.445479 CGATG 398 1 0.45128 CGATG 398 2 1.03815 CGATT 399 0 0.116115 CGATT 399 1 -0.0241595 CGATT 399 2 -0.933223 CGCAA 400 0 0.721939 CGCAA 400 1 0.504556 CGCAA 400 2 0.29028 CGCAC 401 0 -2.34437 CGCAC 401 1 -1.32913 CGCAC 401 2 -0.222325 CGCAG 402 0 -0.473966 CGCAG 402 1 0.519876 CGCAG 402 2 0.364224 CGCAT 403 0 0.149871 CGCAT 403 1 -0.421215 CGCAT 403 2 -0.557015 CGCCA 404 0 -0.217722 CGCCA 404 1 0.0816781 CGCCA 404 2 0.0460276 CGCCC 405 0 0.169074 CGCCC 405 1 -1.12816 CGCCC 405 2 -0.986692 CGCCG 406 0 0.44629 CGCCG 406 1 0.514545 CGCCG 406 2 1.27455 CGCCT 407 0 -0.216225 CGCCT 407 1 0.267082 CGCCT 407 2 -0.78421 CGCGA 408 0 -0.0465651 CGCGA 408 1 0.427651 CGCGA 408 2 0.140646 CGCGC 409 0 -0.433288 CGCGC 409 1 -0.517793 CGCGC 409 2 -1.04842 CGCGG 410 0 0.634684 CGCGG 410 1 0.110811 CGCGG 410 2 0.985526 CGCGT 411 0 -0.0666808 CGCGT 411 1 -0.100258 CGCGT 411 2 -0.353255 CGCTA 412 0 -0.250403 CGCTA 412 1 -0.54578 CGCTA 412 2 0.0159468 CGCTC 413 0 0.34604 CGCTC 413 1 -0.192959 CGCTC 413 2 -0.0768172 CGCTG 414 0 0.0765997 CGCTG 414 1 0.691785 CGCTG 414 2 1.10868 CGCTT 415 0 -0.0746027 CGCTT 415 1 -0.0472042 CGCTT 415 2 -1.36172 CGGAA 416 0 0.355469 CGGAA 416 1 -0.269036 CGGAA 416 2 0.38159 CGGAC 417 0 -0.167282 CGGAC 417 1 -0.0478757 CGGAC 417 2 -0.71351 CGGAG 418 0 -0.078053 CGGAG 418 1 0.356144 CGGAG 418 2 0.511852 CGGAT 419 0 -0.249656 CGGAT 419 1 -0.113082 CGGAT 419 2 -1.0243 CGGCA 420 0 -0.148421 CGGCA 420 1 0.0859428 CGGCA 420 2 0.31425 CGGCC 421 0 0.0140978 CGGCC 421 1 -0.387526 CGGCC 421 2 -0.205205 CGGCG 422 0 -0.177406 CGGCG 422 1 0.110841 CGGCG 422 2 0.624939 CGGCT 423 0 0.152961 CGGCT 423 1 0.0675194 CGGCT 423 2 -0.832381 CGGGA 424 0 0.084276 CGGGA 424 1 0.0225517 CGGGA 424 2 0.191174 CGGGC 425 0 0.505062 CGGGC 425 1 -0.595417 CGGGC 425 2 -0.638103 CGGGG 426 0 -0.78207 CGGGG 426 1 -0.16753 CGGGG 426 2 0.0941849 CGGGT 427 0 -0.101828 CGGGT 427 1 0.310233 CGGGT 427 2 -0.0719746 CGGTA 428 0 -0.990729 CGGTA 428 1 -0.281475 CGGTA 428 2 0.0883708 CGGTC 429 0 -0.10707 CGGTC 429 1 -0.462174 CGGTC 429 2 -0.815654 CGGTG 430 0 0.199821 CGGTG 430 1 0.270447 CGGTG 430 2 0.591162 CGGTT 431 0 0.251881 CGGTT 431 1 0.12768 CGGTT 431 2 -0.442863 CGTAA 432 0 0.225545 CGTAA 432 1 -3.31913 CGTAA 432 2 -0.336822 CGTAC 433 0 -0.424482 CGTAC 433 1 1.00533 CGTAC 433 2 0.213094 CGTAG 434 0 0.141177 CGTAG 434 1 -2.83143 CGTAG 434 2 0.583013 CGTAT 435 0 -0.0935265 CGTAT 435 1 0.247836 CGTAT 435 2 -0.380771 CGTCA 436 0 0.0749171 CGTCA 436 1 0.298317 CGTCA 436 2 0.218431 CGTCC 437 0 0.106172 CGTCC 437 1 -0.526759 CGTCC 437 2 -0.108675 CGTCG 438 0 -0.121893 CGTCG 438 1 0.610318 CGTCG 438 2 1.04878 CGTCT 439 0 -0.0589639 CGTCT 439 1 -0.386993 CGTCT 439 2 -1.04408 CGTGA 440 0 0.160679 CGTGA 440 1 -3.92336 CGTGA 440 2 -0.0572723 CGTGC 441 0 -0.0860176 CGTGC 441 1 0.100508 CGTGC 441 2 -0.249038 CGTGG 442 0 0.508816 CGTGG 442 1 0.783502 CGTGG 442 2 0.99954 CGTGT 443 0 -0.463071 CGTGT 443 1 0.297215 CGTGT 443 2 -0.708574 CGTTA 444 0 -0.234039 CGTTA 444 1 -0.196628 CGTTA 444 2 -0.516275 CGTTC 445 0 0.428185 CGTTC 445 1 0.342367 CGTTC 445 2 0.132422 CGTTG 446 0 -0.534871 CGTTG 446 1 0.154689 CGTTG 446 2 0.690495 CGTTT 447 0 0.163194 CGTTT 447 1 -0.15965 CGTTT 447 2 -0.463351 CTAAA 448 0 0.196124 CTAAA 448 1 -0.0794874 CTAAA 448 2 -0.216832 CTAAC 449 0 -0.0916141 CTAAC 449 1 -0.0962941 CTAAC 449 2 0.356087 CTAAG 450 0 0.613233 CTAAG 450 1 0.721246 CTAAG 450 2 0.643771 CTAAT 451 0 -0.554845 CTAAT 451 1 -0.299059 CTAAT 451 2 -0.426671 CTACA 452 0 0.0478851 CTACA 452 1 -0.10059 CTACA 452 2 0.234426 CTACC 453 0 0.223144 CTACC 453 1 0.0399416 CTACC 453 2 -0.192172 CTACG 454 0 0.446598 CTACG 454 1 0.232264 CTACG 454 2 1.18846 CTACT 455 0 -0.287217 CTACT 455 1 0.020618 CTACT 455 2 -0.646638 CTAGA 456 0 0.246182 CTAGA 456 1 -0.0586193 CTAGA 456 2 -0.141312 CTAGC 457 0 0.376413 CTAGC 457 1 0.300709 CTAGC 457 2 0.45582 CTAGG 458 0 0.213982 CTAGG 458 1 -0.0698786 CTAGG 458 2 0.361791 CTAGT 459 0 -0.717782 CTAGT 459 1 -0.0750973 CTAGT 459 2 -0.417299 CTATA 460 0 -0.283342 CTATA 460 1 -0.399952 CTATA 460 2 -0.250032 CTATC 461 0 0.790597 CTATC 461 1 0.221146 CTATC 461 2 0.000141872 CTATG 462 0 0.0157971 CTATG 462 1 0.311829 CTATG 462 2 0.979399 CTATT 463 0 -0.235378 CTATT 463 1 -0.0205807 CTATT 463 2 -0.803106 CTCAA 464 0 0.207773 CTCAA 464 1 0.168792 CTCAA 464 2 0.175746 CTCAC 465 0 0.0229188 CTCAC 465 1 -0.330019 CTCAC 465 2 0.0490934 CTCAG 466 0 0.0135302 CTCAG 466 1 0.489178 CTCAG 466 2 0.59923 CTCAT 467 0 -0.25823 CTCAT 467 1 -0.336222 CTCAT 467 2 -0.719147 CTCCA 468 0 -0.0190301 CTCCA 468 1 0.0722103 CTCCA 468 2 0.4398 CTCCC 469 0 -0.0937423 CTCCC 469 1 -0.55841 CTCCC 469 2 -0.374198 CTCCG 470 0 0.821256 CTCCG 470 1 0.12356 CTCCG 470 2 0.67895 CTCCT 471 0 -0.268142 CTCCT 471 1 0.180876 CTCCT 471 2 -0.858575 CTCGA 472 0 0.07024 CTCGA 472 1 0.0869795 CTCGA 472 2 0.0069542 CTCGC 473 0 0.543528 CTCGC 473 1 -0.474653 CTCGC 473 2 0.0806409 CTCGG 474 0 0.149898 CTCGG 474 1 -0.223555 CTCGG 474 2 0.534308 CTCGT 475 0 -0.504437 CTCGT 475 1 0.140842 CTCGT 475 2 -0.544186 CTCTA 476 0 -0.306242 CTCTA 476 1 -0.103719 CTCTA 476 2 0.239569 CTCTC 477 0 0.346404 CTCTC 477 1 0.189816 CTCTC 477 2 -0.298906 CTCTG 478 0 0.0123534 CTCTG 478 1 -0.0591605 CTCTG 478 2 0.86706 CTCTT 479 0 -0.0681583 CTCTT 479 1 -0.0239966 CTCTT 479 2 -0.923752 CTGAA 480 0 0.450985 CTGAA 480 1 -0.0308218 CTGAA 480 2 -0.226313 CTGAC 481 0 0.304965 CTGAC 481 1 0.00192872 CTGAC 481 2 0.758749 CTGAG 482 0 -0.255877 CTGAG 482 1 0.269691 CTGAG 482 2 0.370374 CTGAT 483 0 -0.610957 CTGAT 483 1 -0.117937 CTGAT 483 2 -0.462034 CTGCA 484 0 -0.239577 CTGCA 484 1 -0.272996 CTGCA 484 2 0.328432 CTGCC 485 0 0.462007 CTGCC 485 1 -0.036376 CTGCC 485 2 0.133099 CTGCG 486 0 0.242075 CTGCG 486 1 -0.327939 CTGCG 486 2 0.00730219 CTGCT 487 0 -0.0896931 CTGCT 487 1 0.283276 CTGCT 487 2 -0.628423 CTGGA 488 0 0.353382 CTGGA 488 1 0.0384591 CTGGA 488 2 0.405341 CTGGC 489 0 0.661225 CTGGC 489 1 -0.131461 CTGGC 489 2 -0.0250494 CTGGG 490 0 -0.563898 CTGGG 490 1 -0.138036 CTGGG 490 2 0.325618 CTGGT 491 0 -0.787224 CTGGT 491 1 0.0810984 CTGGT 491 2 -1.00729 CTGTA 492 0 -0.703087 CTGTA 492 1 -0.323253 CTGTA 492 2 -0.0950832 CTGTC 493 0 0.0887816 CTGTC 493 1 -0.19717 CTGTC 493 2 -0.234198 CTGTG 494 0 -0.345503 CTGTG 494 1 -0.0601773 CTGTG 494 2 0.893749 CTGTT 495 0 0.347646 CTGTT 495 1 0.259342 CTGTT 495 2 -0.873276 CTTAA 496 0 -0.0868138 CTTAA 496 1 -5.29333 CTTAA 496 2 -0.0206035 CTTAC 497 0 0.416825 CTTAC 497 1 0.794925 CTTAC 497 2 0.185771 CTTAG 498 0 0.254247 CTTAG 498 1 -4.46916 CTTAG 498 2 0.706524 CTTAT 499 0 -0.281411 CTTAT 499 1 0.56929 CTTAT 499 2 -0.613884 CTTCA 500 0 0.108276 CTTCA 500 1 0.234495 CTTCA 500 2 0.30849 CTTCC 501 0 0.122692 CTTCC 501 1 0.011965 CTTCC 501 2 0.183531 CTTCG 502 0 0.409947 CTTCG 502 1 -0.296905 CTTCG 502 2 0.525447 CTTCT 503 0 -0.266693 CTTCT 503 1 -0.158035 CTTCT 503 2 -0.647397 CTTGA 504 0 0.00129341 CTTGA 504 1 -4.80294 CTTGA 504 2 0.30613 CTTGC 505 0 0.321567 CTTGC 505 1 0.48213 CTTGC 505 2 -0.175965 CTTGG 506 0 0.292384 CTTGG 506 1 0.663205 CTTGG 506 2 0.693321 CTTGT 507 0 -0.424573 CTTGT 507 1 0.0420746 CTTGT 507 2 -1.07727 CTTTA 508 0 -0.875827 CTTTA 508 1 -0.432552 CTTTA 508 2 -0.065999 CTTTC 509 0 0.421475 CTTTC 509 1 0.363661 CTTTC 509 2 -0.556768 CTTTG 510 0 0.264662 CTTTG 510 1 0.579795 CTTTG 510 2 1.01931 CTTTT 511 0 -0.0505024 CTTTT 511 1 -0.38554 CTTTT 511 2 -0.649435 GAAAA 512 0 -0.0160752 GAAAA 512 1 -0.179212 GAAAA 512 2 -0.19218 GAAAC 513 0 0.0330818 GAAAC 513 1 0.228435 GAAAC 513 2 0.0306448 GAAAG 514 0 0.138885 GAAAG 514 1 0.406581 GAAAG 514 2 0.624657 GAAAT 515 0 -0.0883888 GAAAT 515 1 -0.241186 GAAAT 515 2 -0.367934 GAACA 516 0 0.119094 GAACA 516 1 0.382446 GAACA 516 2 0.447376 GAACC 517 0 0.430151 GAACC 517 1 -0.391657 GAACC 517 2 0.157459 GAACG 518 0 -0.0674191 GAACG 518 1 0.0719135 GAACG 518 2 0.27576 GAACT 519 0 -0.272929 GAACT 519 1 -0.191208 GAACT 519 2 -0.593054 GAAGA 520 0 0.169343 GAAGA 520 1 0.0330237 GAAGA 520 2 0.291007 GAAGC 521 0 0.476773 GAAGC 521 1 0.355182 GAAGC 521 2 0.261565 GAAGG 522 0 0.0128138 GAAGG 522 1 0.0581244 GAAGG 522 2 0.233395 GAAGT 523 0 -0.498989 GAAGT 523 1 -0.253071 GAAGT 523 2 -0.771955 GAATA 524 0 -0.200723 GAATA 524 1 -0.509294 GAATA 524 2 -0.293499 GAATC 525 0 0.683747 GAATC 525 1 0.200822 GAATC 525 2 0.385118 GAATG 526 0 -0.115735 GAATG 526 1 0.176209 GAATG 526 2 0.733564 GAATT 527 0 -0.148006 GAATT 527 1 0.0721606 GAATT 527 2 -0.83393 GACAA 528 0 0.0998842 GACAA 528 1 0.282753 GACAA 528 2 0.00186288 GACAC 529 0 0.401208 GACAC 529 1 0.082872 GACAC 529 2 0.349873 GACAG 530 0 -0.35722 GACAG 530 1 -0.0313908 GACAG 530 2 0.480858 GACAT 531 0 -0.151126 GACAT 531 1 -0.459421 GACAT 531 2 -0.727993 GACCA 532 0 0.245316 GACCA 532 1 0.441306 GACCA 532 2 0.45551 GACCC 533 0 0.241813 GACCC 533 1 -0.970256 GACCC 533 2 0.145838 GACCG 534 0 -0.292967 GACCG 534 1 0.371979 GACCG 534 2 0.437358 GACCT 535 0 -0.388277 GACCT 535 1 -0.123131 GACCT 535 2 -1.00897 GACGA 536 0 0.444085 GACGA 536 1 0.130607 GACGA 536 2 0.272633 GACGC 537 0 0.158501 GACGC 537 1 0.314952 GACGC 537 2 0.0257469 GACGG 538 0 -0.172804 GACGG 538 1 -0.0967332 GACGG 538 2 0.318679 GACGT 539 0 -0.543484 GACGT 539 1 -0.221293 GACGT 539 2 -0.727564 GACTA 540 0 -0.496929 GACTA 540 1 -0.207667 GACTA 540 2 0.0298001 GACTC 541 0 0.104815 GACTC 541 1 0.0785248 GACTC 541 2 0.261586 GACTG 542 0 -0.0209935 GACTG 542 1 -0.291934 GACTG 542 2 0.69462 GACTT 543 0 0.18372 GACTT 543 1 0.171607 GACTT 543 2 -0.828014 GAGAA 544 0 0.333923 GAGAA 544 1 -0.133167 GAGAA 544 2 0.0703394 GAGAC 545 0 -0.015614 GAGAC 545 1 -0.349785 GAGAC 545 2 0.397049 GAGAG 546 0 -0.201348 GAGAG 546 1 0.190862 GAGAG 546 2 0.401548 GAGAT 547 0 -0.383062 GAGAT 547 1 0.134166 GAGAT 547 2 -0.813013 GAGCA 548 0 -0.00922982 GAGCA 548 1 -0.0189307 GAGCA 548 2 0.278776 GAGCC 549 0 0.179895 GAGCC 549 1 -0.255677 GAGCC 549 2 -0.1925 GAGCG 550 0 -0.0981249 GAGCG 550 1 -0.723366 GAGCG 550 2 0.0847285 GAGCT 551 0 -0.0477644 GAGCT 551 1 0.207205 GAGCT 551 2 -0.22892 GAGGA 552 0 0.41596 GAGGA 552 1 0.210909 GAGGA 552 2 0.168913 GAGGC 553 0 0.246613 GAGGC 553 1 -0.567538 GAGGC 553 2 0.123921 GAGGG 554 0 -0.690139 GAGGG 554 1 -0.388439 GAGGG 554 2 0.169141 GAGGT 555 0 -0.378487 GAGGT 555 1 0.256323 GAGGT 555 2 -0.565031 GAGTA 556 0 -0.161132 GAGTA 556 1 -0.494903 GAGTA 556 2 -0.0443188 GAGTC 557 0 0.174722 GAGTC 557 1 0.146889 GAGTC 557 2 -0.284339 GAGTG 558 0 -0.184732 GAGTG 558 1 0.289659 GAGTG 558 2 0.844619 GAGTT 559 0 0.0828105 GAGTT 559 1 0.0455859 GAGTT 559 2 -0.51779 GATAA 560 0 0.0824555 GATAA 560 1 -4.42903 GATAA 560 2 -0.0162272 GATAC 561 0 -0.126189 GATAC 561 1 1.31684 GATAC 561 2 0.221674 GATAG 562 0 0.173439 GATAG 562 1 -3.73099 GATAG 562 2 0.705767 GATAT 563 0 -0.102723 GATAT 563 1 0.150144 GATAT 563 2 -0.643927 GATCA 564 0 -0.0511663 GATCA 564 1 0.440225 GATCA 564 2 0.386311 GATCC 565 0 0.504518 GATCC 565 1 -0.746612 GATCC 565 2 -0.0261415 GATCG 566 0 0.299122 GATCG 566 1 0.338658 GATCG 566 2 0.84437 GATCT 567 0 -0.397568 GATCT 567 1 -0.296885 GATCT 567 2 -0.933523 GATGA 568 0 0.20411 GATGA 568 1 -4.79888 GATGA 568 2 0.0751036 GATGC 569 0 0.278554 GATGC 569 1 -0.164269 GATGC 569 2 0.0933119 GATGG 570 0 -0.0187103 GATGG 570 1 0.889782 GATGG 570 2 0.410157 GATGT 571 0 -0.488013 GATGT 571 1 0.109162 GATGT 571 2 -0.643771 GATTA 572 0 -0.214646 GATTA 572 1 -0.422764 GATTA 572 2 -0.141506 GATTC 573 0 0.259946 GATTC 573 1 0.223869 GATTC 573 2 -0.228745 GATTG 574 0 -0.344549 GATTG 574 1 0.0988833 GATTG 574 2 0.871269 GATTT 575 0 0.100629 GATTT 575 1 0.0210477 GATTT 575 2 -0.684722 GCAAA 576 0 0.0809435 GCAAA 576 1 -0.15762 GCAAA 576 2 -0.533396 GCAAC 577 0 0.265374 GCAAC 577 1 -0.0190347 GCAAC 577 2 -0.019851 GCAAG 578 0 -0.346225 GCAAG 578 1 0.425528 GCAAG 578 2 0.710464 GCAAT 579 0 -0.111908 GCAAT 579 1 -0.163629 GCAAT 579 2 -0.181111 GCACA 580 0 -0.16382 GCACA 580 1 -0.145537 GCACA 580 2 0.21397 GCACC 581 0 0.339238 GCACC 581 1 -0.0255103 GCACC 581 2 0.163392 GCACG 582 0 -0.21272 GCACG 582 1 -0.30537 GCACG 582 2 0.566025 GCACT 583 0 -0.04468 GCACT 583 1 0.233392 GCACT 583 2 -1.09633 GCAGA 584 0 0.0140805 GCAGA 584 1 0.176724 GCAGA 584 2 0.0989201 GCAGC 585 0 0.165712 GCAGC 585 1 -0.336863 GCAGC 585 2 -0.143509 GCAGG 586 0 0.0155224 GCAGG 586 1 0.211549 GCAGG 586 2 0.353546 GCAGT 587 0 -0.208381 GCAGT 587 1 -0.0931093 GCAGT 587 2 -0.298765 GCATA 588 0 -0.478651 GCATA 588 1 -0.377709 GCATA 588 2 -0.452674 GCATC 589 0 0.50104 GCATC 589 1 0.127159 GCATC 589 2 0.0576971 GCATG 590 0 -0.343995 GCATG 590 1 0.277975 GCATG 590 2 0.563841 GCATT 591 0 0.108662 GCATT 591 1 -0.0532315 GCATT 591 2 -0.30803 GCCAA 592 0 0.202371 GCCAA 592 1 -0.191369 GCCAA 592 2 -0.0225726 GCCAC 593 0 0.0646445 GCCAC 593 1 0.151631 GCCAC 593 2 -0.231863 GCCAG 594 0 -0.577541 GCCAG 594 1 0.718002 GCCAG 594 2 0.712443 GCCAT 595 0 -0.087713 GCCAT 595 1 -0.404658 GCCAT 595 2 -0.303348 GCCCA 596 0 0.164933 GCCCA 596 1 -0.304291 GCCCA 596 2 0.298053 GCCCC 597 0 -0.22516 GCCCC 597 1 -0.23011 GCCCC 597 2 -0.321412 GCCCG 598 0 -0.133221 GCCCG 598 1 -0.310152 GCCCG 598 2 1.02642 GCCCT 599 0 0.0625186 GCCCT 599 1 0.359309 GCCCT 599 2 -0.947414 GCCGA 600 0 0.0522125 GCCGA 600 1 -0.830644 GCCGA 600 2 -0.739668 GCCGC 601 0 -0.349154 GCCGC 601 1 -0.111176 GCCGC 601 2 -0.544727 GCCGG 602 0 0.623564 GCCGG 602 1 0.622794 GCCGG 602 2 0.996335 GCCGT 603 0 -0.18383 GCCGT 603 1 0.171393 GCCGT 603 2 0.0582685 GCCTA 604 0 -0.320978 GCCTA 604 1 -0.64518 GCCTA 604 2 0.109068 GCCTC 605 0 0.29419 GCCTC 605 1 0.234959 GCCTC 605 2 -0.282149 GCCTG 606 0 0.130132 GCCTG 606 1 0.0613931 GCCTG 606 2 0.814342 GCCTT 607 0 -0.0418935 GCCTT 607 1 0.159449 GCCTT 607 2 -0.670216 GCGAA 608 0 0.0297967 GCGAA 608 1 -0.35403 GCGAA 608 2 -0.622653 GCGAC 609 0 -0.170135 GCGAC 609 1 -0.0122815 GCGAC 609 2 0.509858 GCGAG 610 0 -0.762026 GCGAG 610 1 -0.0525526 GCGAG 610 2 0.222179 GCGAT 611 0 0.534223 GCGAT 611 1 0.465093 GCGAT 611 2 -0.0630395 GCGCA 612 0 -0.589379 GCGCA 612 1 -0.285819 GCGCA 612 2 -1.36352 GCGCC 613 0 0.815859 GCGCC 613 1 0.585333 GCGCC 613 2 0.987861 GCGCG 614 0 -0.183912 GCGCG 614 1 -0.414433 GCGCG 614 2 0.0636035 GCGCT 615 0 -0.0317892 GCGCT 615 1 0.0671662 GCGCT 615 2 -0.0768507 GCGGA 616 0 -0.105359 GCGGA 616 1 0.158702 GCGGA 616 2 -0.39062 GCGGC 617 0 0.508324 GCGGC 617 1 0.00822162 GCGGC 617 2 0.0948886 GCGGG 618 0 -0.278204 GCGGG 618 1 -1.09996 GCGGG 618 2 0.0540624 GCGGT 619 0 -0.261363 GCGGT 619 1 0.212522 GCGGT 619 2 0.263789 GCGTA 620 0 -0.98761 GCGTA 620 1 -0.643785 GCGTA 620 2 -0.421216 GCGTC 621 0 0.443785 GCGTC 621 1 -0.745 GCGTC 621 2 0.114307 GCGTG 622 0 -0.358694 GCGTG 622 1 0.208901 GCGTG 622 2 0.488605 GCGTT 623 0 0.446876 GCGTT 623 1 0.516132 GCGTT 623 2 -0.336657 GCTAA 624 0 -0.000980267 GCTAA 624 1 -4.35849 GCTAA 624 2 0.0848037 GCTAC 625 0 0.393273 GCTAC 625 1 0.998976 GCTAC 625 2 -0.0219611 GCTAG 626 0 -0.251451 GCTAG 626 1 -3.94945 GCTAG 626 2 0.325382 GCTAT 627 0 -0.0783438 GCTAT 627 1 0.641558 GCTAT 627 2 -0.43326 GCTCA 628 0 -0.105546 GCTCA 628 1 -0.234759 GCTCA 628 2 0.170706 GCTCC 629 0 0.113182 GCTCC 629 1 -0.274368 GCTCC 629 2 0.118212 GCTCG 630 0 0.446357 GCTCG 630 1 0.535991 GCTCG 630 2 0.3805 GCTCT 631 0 -0.160694 GCTCT 631 1 0.0837787 GCTCT 631 2 -0.450839 GCTGA 632 0 0.0671363 GCTGA 632 1 -4.40417 GCTGA 632 2 0.232404 GCTGC 633 0 0.178477 GCTGC 633 1 0.210949 GCTGC 633 2 -0.151427 GCTGG 634 0 0.212818 GCTGG 634 1 0.981387 GCTGG 634 2 0.398781 GCTGT 635 0 -0.446258 GCTGT 635 1 -0.119294 GCTGT 635 2 -0.605581 GCTTA 636 0 -0.366733 GCTTA 636 1 -0.521963 GCTTA 636 2 -0.10816 GCTTC 637 0 0.502016 GCTTC 637 1 0.0914143 GCTTC 637 2 0.239244 GCTTG 638 0 -0.392001 GCTTG 638 1 0.54355 GCTTG 638 2 0.571147 GCTTT 639 0 0.0522172 GCTTT 639 1 -0.155501 GCTTT 639 2 -0.620997 GGAAA 640 0 -0.0449716 GGAAA 640 1 0.0147604 GGAAA 640 2 -0.111087 GGAAC 641 0 0.418687 GGAAC 641 1 -0.387972 GGAAC 641 2 0.257761 GGAAG 642 0 -0.368904 GGAAG 642 1 0.332707 GGAAG 642 2 0.389694 GGAAT 643 0 0.0347574 GGAAT 643 1 -0.174278 GGAAT 643 2 -0.464011 GGACA 644 0 -0.346599 GGACA 644 1 0.0590997 GGACA 644 2 -0.0473435 GGACC 645 0 0.633593 GGACC 645 1 0.0104999 GGACC 645 2 0.449293 GGACG 646 0 0.0679568 GGACG 646 1 -0.00780146 GGACG 646 2 0.42725 GGACT 647 0 -0.0765558 GGACT 647 1 -0.0705589 GGACT 647 2 -0.449458 GGAGA 648 0 0.23764 GGAGA 648 1 0.495097 GGAGA 648 2 0.361252 GGAGC 649 0 0.00788488 GGAGC 649 1 -0.521318 GGAGC 649 2 0.0945758 GGAGG 650 0 0.185272 GGAGG 650 1 0.0988678 GGAGG 650 2 0.0415701 GGAGT 651 0 -0.48063 GGAGT 651 1 -0.514737 GGAGT 651 2 -0.614929 GGATA 652 0 -0.68184 GGATA 652 1 -0.615598 GGATA 652 2 -0.106185 GGATC 653 0 0.300404 GGATC 653 1 0.0597628 GGATC 653 2 -0.0092305 GGATG 654 0 -0.0304312 GGATG 654 1 0.400051 GGATG 654 2 0.537099 GGATT 655 0 0.213748 GGATT 655 1 0.0356757 GGATT 655 2 -0.432157 GGCAA 656 0 0.202512 GGCAA 656 1 0.381305 GGCAA 656 2 0.207656 GGCAC 657 0 -0.070898 GGCAC 657 1 -0.537115 GGCAC 657 2 -0.108612 GGCAG 658 0 -0.479904 GGCAG 658 1 0.200405 GGCAG 658 2 0.285353 GGCAT 659 0 0.0708319 GGCAT 659 1 -0.465782 GGCAT 659 2 -0.507113 GGCCA 660 0 -0.00476012 GGCCA 660 1 0.28228 GGCCA 660 2 0.296012 GGCCC 661 0 0.189583 GGCCC 661 1 -0.664575 GGCCC 661 2 -0.10788 GGCCG 662 0 0.440357 GGCCG 662 1 -0.0341559 GGCCG 662 2 0.330582 GGCCT 663 0 -0.376702 GGCCT 663 1 -0.113616 GGCCT 663 2 -0.652531 GGCGA 664 0 0.237849 GGCGA 664 1 -0.00650421 GGCGA 664 2 0.215216 GGCGC 665 0 -0.133531 GGCGC 665 1 0.25823 GGCGC 665 2 -0.393669 GGCGG 666 0 0.201864 GGCGG 666 1 -0.221501 GGCGG 666 2 0.379152 GGCGT 667 0 -0.448025 GGCGT 667 1 -0.00650421 GGCGT 667 2 -0.503906 GGCTA 668 0 -0.543552 GGCTA 668 1 -0.863715 GGCTA 668 2 -0.121298 GGCTC 669 0 -0.24637 GGCTC 669 1 -0.152182 GGCTC 669 2 -0.503806 GGCTG 670 0 0.000683527 GGCTG 670 1 -0.398921 GGCTG 670 2 0.753208 GGCTT 671 0 0.469294 GGCTT 671 1 0.650786 GGCTT 671 2 -0.383968 GGGAA 672 0 0.335832 GGGAA 672 1 -0.0904718 GGGAA 672 2 0.00096387 GGGAC 673 0 -0.170853 GGGAC 673 1 -0.30498 GGGAC 673 2 0.071562 GGGAG 674 0 -0.334402 GGGAG 674 1 0.364008 GGGAG 674 2 0.322467 GGGAT 675 0 -0.168256 GGGAT 675 1 -0.0876599 GGGAT 675 2 -0.390444 GGGCA 676 0 0.12149 GGGCA 676 1 0.414639 GGGCA 676 2 0.495688 GGGCC 677 0 -0.315985 GGGCC 677 1 -0.597838 GGGCC 677 2 -0.65048 GGGCG 678 0 -0.66059 GGGCG 678 1 -0.404727 GGGCG 678 2 0.284345 GGGCT 679 0 0.201397 GGGCT 679 1 -0.0218717 GGGCT 679 2 -0.387595 GGGGA 680 0 0.195884 GGGGA 680 1 0.238069 GGGGA 680 2 0.557842 GGGGC 681 0 0.861898 GGGGC 681 1 0.651504 GGGGC 681 2 0.383484 GGGGG 682 0 -0.128809 GGGGG 682 1 -1.07572 GGGGG 682 2 -0.209405 GGGGT 683 0 -0.640115 GGGGT 683 1 -0.0105811 GGGGT 683 2 -0.747753 GGGTA 684 0 -0.192044 GGGTA 684 1 -0.460732 GGGTA 684 2 -0.146339 GGGTC 685 0 0.055363 GGGTC 685 1 -0.0529819 GGGTC 685 2 -0.0673964 GGGTG 686 0 -0.466483 GGGTG 686 1 0.0403064 GGGTG 686 2 0.43488 GGGTT 687 0 0.312878 GGGTT 687 1 0.233337 GGGTT 687 2 -0.310227 GGTAA 688 0 0.167017 GGTAA 688 1 -4.06541 GGTAA 688 2 0.0232351 GGTAC 689 0 0.34195 GGTAC 689 1 1.13677 GGTAC 689 2 0.151599 GGTAG 690 0 -0.371276 GGTAG 690 1 -3.8627 GGTAG 690 2 0.187109 GGTAT 691 0 -0.172404 GGTAT 691 1 0.43115 GGTAT 691 2 -0.322958 GGTCA 692 0 -0.133391 GGTCA 692 1 -0.328378 GGTCA 692 2 0.095525 GGTCC 693 0 0.0379288 GGTCC 693 1 0.033429 GGTCC 693 2 0.0291323 GGTCG 694 0 0.159558 GGTCG 694 1 0.422498 GGTCG 694 2 0.775849 GGTCT 695 0 0.0626733 GGTCT 695 1 0.125784 GGTCT 695 2 -0.556957 GGTGA 696 0 0.224524 GGTGA 696 1 -4.20725 GGTGA 696 2 0.290371 GGTGC 697 0 0.300149 GGTGC 697 1 0.509461 GGTGC 697 2 0.00658952 GGTGG 698 0 0.20548 GGTGG 698 1 0.960048 GGTGG 698 2 0.50449 GGTGT 699 0 -0.585172 GGTGT 699 1 -0.790426 GGTGT 699 2 -0.96296 GGTTA 700 0 -0.403274 GGTTA 700 1 -0.584059 GGTTA 700 2 -0.0268143 GGTTC 701 0 0.139622 GGTTC 701 1 0.29286 GGTTC 701 2 0.186378 GGTTG 702 0 0.021668 GGTTG 702 1 0.0102572 GGTTG 702 2 0.655256 GGTTT 703 0 0.145777 GGTTT 703 1 0.137436 GGTTT 703 2 -1.02265 GTAAA 704 0 -0.0313734 GTAAA 704 1 -0.0627815 GTAAA 704 2 -0.293738 GTAAC 705 0 0.0878292 GTAAC 705 1 -0.0343253 GTAAC 705 2 0.363815 GTAAG 706 0 0.104998 GTAAG 706 1 0.0273493 GTAAG 706 2 0.264065 GTAAT 707 0 -0.0941102 GTAAT 707 1 0.0677324 GTAAT 707 2 -0.178668 GTACA 708 0 0.0576497 GTACA 708 1 -0.0540534 GTACA 708 2 0.0295466 GTACC 709 0 0.472199 GTACC 709 1 0.360496 GTACC 709 2 0.0840634 GTACG 710 0 -0.205488 GTACG 710 1 -0.756562 GTACG 710 2 0.263446 GTACT 711 0 -0.330734 GTACT 711 1 0.0286713 GTACT 711 2 -0.194737 GTAGA 712 0 0.232233 GTAGA 712 1 -0.112436 GTAGA 712 2 -0.280902 GTAGC 713 0 0.272915 GTAGC 713 1 0.566395 GTAGC 713 2 0.566395 GTAGG 714 0 0.0853177 GTAGG 714 1 -0.0220917 GTAGG 714 2 0.378798 GTAGT 715 0 -0.529621 GTAGT 715 1 -0.2161 GTAGT 715 2 -0.353065 GTATA 716 0 -0.92082 GTATA 716 1 -0.603981 GTATA 716 2 -0.554011 GTATC 717 0 0.976144 GTATC 717 1 0.474576 GTATC 717 2 0.789876 GTATG 718 0 -0.112814 GTATG 718 1 0.311771 GTATG 718 2 0.559008 GTATT 719 0 -0.00328119 GTATT 719 1 -0.0514827 GTATT 719 2 -0.665439 GTCAA 720 0 -0.0288606 GTCAA 720 1 -0.051282 GTCAA 720 2 -0.397549 GTCAC 721 0 0.0403746 GTCAC 721 1 -0.408059 GTCAC 721 2 0.246415 GTCAG 722 0 -0.0907993 GTCAG 722 1 0.465235 GTCAG 722 2 0.636597 GTCAT 723 0 0.0440722 GTCAT 723 1 -0.0495249 GTCAT 723 2 -0.195271 GTCCA 724 0 -0.258205 GTCCA 724 1 0.150918 GTCCA 724 2 0.291155 GTCCC 725 0 0.698626 GTCCC 725 1 -0.327804 GTCCC 725 2 -0.619997 GTCCG 726 0 0.476675 GTCCG 726 1 -0.412358 GTCCG 726 2 0.512518 GTCCT 727 0 -0.420593 GTCCT 727 1 0.0638774 GTCCT 727 2 -0.357631 GTCGA 728 0 0.21059 GTCGA 728 1 -0.0461052 GTCGA 728 2 0.308609 GTCGC 729 0 -0.0690961 GTCGC 729 1 -0.53454 GTCGC 729 2 -0.1836 GTCGG 730 0 0.137782 GTCGG 730 1 -0.652322 GTCGG 730 2 -0.301382 GTCGT 731 0 -0.362472 GTCGT 731 1 0.473237 GTCGT 731 2 -0.116122 GTCTA 732 0 0.30157 GTCTA 732 1 -0.134646 GTCTA 732 2 0.195491 GTCTC 733 0 0.328718 GTCTC 733 1 0.187301 GTCTC 733 2 -0.331674 GTCTG 734 0 -0.58812 GTCTG 734 1 -0.139791 GTCTG 734 2 0.771876 GTCTT 735 0 -0.183844 GTCTT 735 1 0.0243425 GTCTT 735 2 -0.776235 GTGAA 736 0 0.28514 GTGAA 736 1 0.0329826 GTGAA 736 2 -0.318122 GTGAC 737 0 0.0820639 GTGAC 737 1 0.0753704 GTGAC 737 2 0.492809 GTGAG 738 0 -0.207887 GTGAG 738 1 -0.0949808 GTGAG 738 2 0.338655 GTGAT 739 0 -0.336523 GTGAT 739 1 -0.0227892 GTGAT 739 2 -0.263763 GTGCA 740 0 -0.288763 GTGCA 740 1 -0.315701 GTGCA 740 2 0.126131 GTGCC 741 0 0.689316 GTGCC 741 1 0.288038 GTGCC 741 2 -0.00301361 GTGCG 742 0 -0.329769 GTGCG 742 1 -0.718637 GTGCG 742 2 0.370925 GTGCT 743 0 -0.0118761 GTGCT 743 1 0.305364 GTGCT 743 2 -0.353598 GTGGA 744 0 0.314299 GTGGA 744 1 0.21424 GTGGA 744 2 0.204476 GTGGC 745 0 0.463375 GTGGC 745 1 0.146208 GTGGC 745 2 0.265576 GTGGG 746 0 -0.659626 GTGGG 746 1 -0.854454 GTGGG 746 2 0.0737536 GTGGT 747 0 -0.308761 GTGGT 747 1 0.121536 GTGGT 747 2 -0.536351 GTGTA 748 0 -0.595675 GTGTA 748 1 -0.223165 GTGTA 748 2 -0.176585 GTGTC 749 0 0.776782 GTGTC 749 1 0.182088 GTGTC 749 2 0.129519 GTGTG 750 0 -0.673518 GTGTG 750 1 -0.311494 GTGTG 750 2 0.227018 GTGTT 751 0 0.154821 GTGTT 751 1 0.210572 GTGTT 751 2 -0.126308 GTTAA 752 0 0.317402 GTTAA 752 1 -4.82081 GTTAA 752 2 0.0600268 GTTAC 753 0 0.0757704 GTTAC 753 1 0.816406 GTTAC 753 2 0.165315 GTTAG 754 0 -0.0911156 GTTAG 754 1 -4.24913 GTTAG 754 2 0.532246 GTTAT 755 0 -0.398496 GTTAT 755 1 0.591658 GTTAT 755 2 -0.686225 GTTCA 756 0 -0.306582 GTTCA 756 1 -0.051428 GTTCA 756 2 0.00448458 GTTCC 757 0 0.512689 GTTCC 757 1 0.130549 GTTCC 757 2 0.393582 GTTCG 758 0 0.530457 GTTCG 758 1 0.0664925 GTTCG 758 2 -0.0157484 GTTCT 759 0 -0.20801 GTTCT 759 1 -0.0253181 GTTCT 759 2 -0.20425 GTTGA 760 0 0.0446639 GTTGA 760 1 -4.97403 GTTGA 760 2 0.127322 GTTGC 761 0 0.395169 GTTGC 761 1 0.449797 GTTGC 761 2 0.23178 GTTGG 762 0 0.163102 GTTGG 762 1 0.622942 GTTGG 762 2 0.449525 GTTGT 763 0 -0.439718 GTTGT 763 1 0.140209 GTTGT 763 2 -0.78477 GTTTA 764 0 -0.360207 GTTTA 764 1 -0.116239 GTTTA 764 2 -0.0598655 GTTTC 765 0 0.567535 GTTTC 765 1 0.184032 GTTTC 765 2 -0.201569 GTTTG 766 0 -0.319386 GTTTG 766 1 0.0117613 GTTTG 766 2 0.655354 GTTTT 767 0 -0.043126 GTTTT 767 1 -0.0450578 GTTTT 767 2 -0.561503 TAAAA 768 0 -0.332315 TAAAA 768 1 -0.0932635 TAAAA 768 2 -0.147683 TAAAC 769 0 0.596957 TAAAC 769 1 -0.01129 TAAAC 769 2 0.126954 TAAAG 770 0 0.310533 TAAAG 770 1 0.422203 TAAAG 770 2 0.624938 TAAAT 771 0 -0.279348 TAAAT 771 1 -0.214018 TAAAT 771 2 -0.499028 TAACA 772 0 -0.303078 TAACA 772 1 0.119276 TAACA 772 2 0.0333943 TAACC 773 0 0.406874 TAACC 773 1 0.0194925 TAACC 773 2 0.189529 TAACG 774 0 0.987906 TAACG 774 1 0.0382167 TAACG 774 2 0.621215 TAACT 775 0 -0.474929 TAACT 775 1 -0.132219 TAACT 775 2 -0.377508 TAAGA 776 0 -0.174995 TAAGA 776 1 -0.0745777 TAAGA 776 2 0.175958 TAAGC 777 0 0.406928 TAAGC 777 1 0.178491 TAAGC 777 2 0.083583 TAAGG 778 0 0.406928 TAAGG 778 1 0.341451 TAAGG 778 2 0.791148 TAAGT 779 0 -0.390265 TAAGT 779 1 -0.240146 TAAGT 779 2 -1.3386 TAATA 780 0 -0.0145142 TAATA 780 1 -0.541056 TAATA 780 2 -0.275526 TAATC 781 0 0.617862 TAATC 781 1 0.506635 TAATC 781 2 0.370784 TAATG 782 0 0.287469 TAATG 782 1 0.449111 TAATG 782 2 0.86165 TAATT 783 0 -0.528346 TAATT 783 1 -0.236288 TAATT 783 2 -0.924397 TACAA 784 0 0.353318 TACAA 784 1 0.326625 TACAA 784 2 0.21697 TACAC 785 0 -0.202896 TACAC 785 1 -0.270442 TACAC 785 2 -0.17948 TACAG 786 0 0.046278 TACAG 786 1 0.368588 TACAG 786 2 0.45117 TACAT 787 0 -0.324497 TACAT 787 1 -0.49095 TACAT 787 2 -0.443928 TACCA 788 0 0.0366052 TACCA 788 1 0.507859 TACCA 788 2 0.463752 TACCC 789 0 0.489167 TACCC 789 1 -1.16617 TACCC 789 2 -0.0846054 TACCG 790 0 0.193287 TACCG 790 1 0.39485 TACCG 790 2 0.841054 TACCT 791 0 -0.400666 TACCT 791 1 -0.24038 TACCT 791 2 -0.871379 TACGA 792 0 0.447231 TACGA 792 1 0.330685 TACGA 792 2 0.280383 TACGC 793 0 -0.0146436 TACGC 793 1 0.00308058 TACGC 793 2 0.330683 TACGG 794 0 0.342242 TACGG 794 1 0.200672 TACGG 794 2 -0.00607709 TACGT 795 0 -0.903908 TACGT 795 1 -0.492475 TACGT 795 2 -0.520979 TACTA 796 0 -0.186762 TACTA 796 1 -0.361062 TACTA 796 2 -0.116378 TACTC 797 0 0.2267 TACTC 797 1 -0.0924311 TACTC 797 2 -0.0600764 TACTG 798 0 0.112846 TACTG 798 1 0.253254 TACTG 798 2 0.924051 TACTT 799 0 -0.050715 TACTT 799 1 0.129738 TACTT 799 2 -0.778088 TAGAA 800 0 -0.318585 TAGAA 800 1 0.0983979 TAGAA 800 2 -0.312921 TAGAC 801 0 0.561046 TAGAC 801 1 -0.0758042 TAGAC 801 2 0.0819126 TAGAG 802 0 0.169001 TAGAG 802 1 0.113429 TAGAG 802 2 0.607989 TAGAT 803 0 -0.190372 TAGAT 803 1 -0.182678 TAGAT 803 2 -0.384122 TAGCA 804 0 -0.37401 TAGCA 804 1 -0.0417497 TAGCA 804 2 0.266599 TAGCC 805 0 0.455896 TAGCC 805 1 0.17991 TAGCC 805 2 0.100346 TAGCG 806 0 1.08235 TAGCG 806 1 -0.161627 TAGCG 806 2 0.129985 TAGCT 807 0 -0.453475 TAGCT 807 1 -0.00954359 TAGCT 807 2 -0.43785 TAGGA 808 0 -0.392772 TAGGA 808 1 0.0921897 TAGGA 808 2 -0.0668953 TAGGC 809 0 0.519873 TAGGC 809 1 -0.138424 TAGGC 809 2 0.330972 TAGGG 810 0 0.432865 TAGGG 810 1 -0.073245 TAGGG 810 2 0.659283 TAGGT 811 0 -0.243476 TAGGT 811 1 -0.0160857 TAGGT 811 2 -0.873108 TAGTA 812 0 -0.0983021 TAGTA 812 1 -0.160177 TAGTA 812 2 -0.183011 TAGTC 813 0 0.69095 TAGTC 813 1 0.508626 TAGTC 813 2 0.267561 TAGTG 814 0 0.19071 TAGTG 814 1 0.100054 TAGTG 814 2 0.587678 TAGTT 815 0 -0.450586 TAGTT 815 1 -0.178019 TAGTT 815 2 -0.513432 TATAA 816 0 0.273875 TATAA 816 1 -4.50437 TATAA 816 2 0.0771266 TATAC 817 0 0.270792 TATAC 817 1 0.565808 TATAC 817 2 0.117541 TATAG 818 0 0.0494226 TATAG 818 1 -3.92283 TATAG 818 2 0.840164 TATAT 819 0 -0.366215 TATAT 819 1 0.506213 TATAT 819 2 -0.745032 TATCA 820 0 -0.0990206 TATCA 820 1 -0.0511875 TATCA 820 2 0.185135 TATCC 821 0 0.705138 TATCC 821 1 -0.0667818 TATCC 821 2 0.246526 TATCG 822 0 -0.0873051 TATCG 822 1 0.571282 TATCG 822 2 0.642094 TATCT 823 0 -0.326078 TATCT 823 1 -0.122396 TATCT 823 2 -0.67298 TATGA 824 0 0.0809508 TATGA 824 1 -4.6661 TATGA 824 2 0.0314319 TATGC 825 0 0.307492 TATGC 825 1 0.492391 TATGC 825 2 0.277382 TATGG 826 0 0.351956 TATGG 826 1 0.406941 TATGG 826 2 0.753643 TATGT 827 0 -0.507112 TATGT 827 1 0.253141 TATGT 827 2 -1.07277 TATTA 828 0 -0.172573 TATTA 828 1 -0.242118 TATTA 828 2 -0.149459 TATTC 829 0 0.561464 TATTC 829 1 0.453698 TATTC 829 2 0.487869 TATTG 830 0 -0.334706 TATTG 830 1 0.234478 TATTG 830 2 0.723261 TATTT 831 0 -0.0243439 TATTT 831 1 -0.178111 TATTT 831 2 -0.802103 TCAAA 832 0 0.0281299 TCAAA 832 1 -0.234818 TCAAA 832 2 -0.0498164 TCAAC 833 0 -0.0457599 TCAAC 833 1 -0.17308 TCAAC 833 2 -0.126174 TCAAG 834 0 0.337074 TCAAG 834 1 0.597889 TCAAG 834 2 0.737677 TCAAT 835 0 -0.237302 TCAAT 835 1 -0.10019 TCAAT 835 2 -0.574223 TCACA 836 0 -0.21971 TCACA 836 1 -0.100346 TCACA 836 2 0.0880715 TCACC 837 0 0.570017 TCACC 837 1 0.24457 TCACC 837 2 0.182129 TCACG 838 0 -0.0900219 TCACG 838 1 -0.438329 TCACG 838 2 0.168489 TCACT 839 0 -0.151376 TCACT 839 1 0.0637842 TCACT 839 2 -0.261063 TCAGA 840 0 0.0839678 TCAGA 840 1 0.000618007 TCAGA 840 2 0.360405 TCAGC 841 0 0.600265 TCAGC 841 1 0.0987467 TCAGC 841 2 0.0796647 TCAGG 842 0 0.0026148 TCAGG 842 1 0.591014 TCAGG 842 2 0.536979 TCAGT 843 0 -0.493759 TCAGT 843 1 -0.355347 TCAGT 843 2 -0.845541 TCATA 844 0 -0.596018 TCATA 844 1 -0.53802 TCATA 844 2 -0.648244 TCATC 845 0 0.555075 TCATC 845 1 0.110712 TCATC 845 2 0.412049 TCATG 846 0 0.0127654 TCATG 846 1 0.38992 TCATG 846 2 0.627353 TCATT 847 0 -0.075193 TCATT 847 1 -0.0556199 TCATT 847 2 -0.548657 TCCAA 848 0 0.360601 TCCAA 848 1 0.25399 TCCAA 848 2 0.147102 TCCAC 849 0 -0.137817 TCCAC 849 1 -0.410932 TCCAC 849 2 -0.259455 TCCAG 850 0 -1.13443 TCCAG 850 1 0.167603 TCCAG 850 2 0.402821 TCCAT 851 0 0.0260311 TCCAT 851 1 -0.139153 TCCAT 851 2 -0.258811 TCCCA 852 0 0.112681 TCCCA 852 1 0.235286 TCCCA 852 2 0.386736 TCCCC 853 0 0.0336726 TCCCC 853 1 -0.711922 TCCCC 853 2 -0.774787 TCCCG 854 0 0.142532 TCCCG 854 1 0.25145 TCCCG 854 2 1.10714 TCCCT 855 0 -0.17225 TCCCT 855 1 0.0460071 TCCCT 855 2 -0.597018 TCCGA 856 0 0.653926 TCCGA 856 1 -0.116071 TCCGA 856 2 0.200672 TCCGC 857 0 -0.148443 TCCGC 857 1 0.0649631 TCCGC 857 2 -0.463468 TCCGG 858 0 0.105581 TCCGG 858 1 0.348881 TCCGG 858 2 1.17987 TCCGT 859 0 -0.694428 TCCGT 859 1 -0.0913785 TCCGT 859 2 -0.992658 TCCTA 860 0 -0.0382022 TCCTA 860 1 -0.397172 TCCTA 860 2 0.038599 TCCTC 861 0 0.376842 TCCTC 861 1 0.540663 TCCTC 861 2 0.16724 TCCTG 862 0 -0.61017 TCCTG 862 1 -0.0786226 TCCTG 862 2 0.680919 TCCTT 863 0 0.0249799 TCCTT 863 1 -0.12367 TCCTT 863 2 -0.796415 TCGAA 864 0 0.200413 TCGAA 864 1 -0.366711 TCGAA 864 2 -0.235765 TCGAC 865 0 -0.0424491 TCGAC 865 1 0.253452 TCGAC 865 2 0.152998 TCGAG 866 0 0.114104 TCGAG 866 1 0.0880948 TCGAG 866 2 0.519803 TCGAT 867 0 -0.326454 TCGAT 867 1 0.108744 TCGAT 867 2 -0.36425 TCGCA 868 0 0.434979 TCGCA 868 1 -0.4178 TCGCA 868 2 0.534135 TCGCC 869 0 0.787985 TCGCC 869 1 0.849468 TCGCC 869 2 0.600772 TCGCG 870 0 0.0617809 TCGCG 870 1 -0.00721106 TCGCG 870 2 -0.0593819 TCGCT 871 0 -1.49772 TCGCT 871 1 -0.21678 TCGCT 871 2 -1.28772 TCGGA 872 0 0.380148 TCGGA 872 1 0.198813 TCGGA 872 2 0.432276 TCGGC 873 0 -0.108049 TCGGC 873 1 -0.0315866 TCGGC 873 2 0.148173 TCGGG 874 0 0.0678384 TCGGG 874 1 -0.328058 TCGGG 874 2 0.0139074 TCGGT 875 0 -0.47251 TCGGT 875 1 -0.0211043 TCGGT 875 2 -0.876826 TCGTA 876 0 -0.657404 TCGTA 876 1 -0.325484 TCGTA 876 2 -0.102946 TCGTC 877 0 0.774835 TCGTC 877 1 0.543704 TCGTC 877 2 0.36507 TCGTG 878 0 -0.318258 TCGTG 878 1 0.0670071 TCGTG 878 2 0.272323 TCGTT 879 0 0.0641297 TCGTT 879 1 -0.144304 TCGTT 879 2 -0.380107 TCTAA 880 0 0.173243 TCTAA 880 1 -4.77196 TCTAA 880 2 0.00972845 TCTAC 881 0 0.242867 TCTAC 881 1 0.979264 TCTAC 881 2 0.137278 TCTAG 882 0 0.147775 TCTAG 882 1 -4.28897 TCTAG 882 2 0.42712 TCTAT 883 0 -0.472627 TCTAT 883 1 0.405665 TCTAT 883 2 -0.438949 TCTCA 884 0 -0.00776529 TCTCA 884 1 -0.114679 TCTCA 884 2 0.304813 TCTCC 885 0 0.862205 TCTCC 885 1 0.0424612 TCTCC 885 2 0.19935 TCTCG 886 0 0.372482 TCTCG 886 1 0.67048 TCTCG 886 2 0.789443 TCTCT 887 0 -0.7891 TCTCT 887 1 -0.115746 TCTCT 887 2 -0.704004 TCTGA 888 0 0.215713 TCTGA 888 1 -4.65396 TCTGA 888 2 0.15585 TCTGC 889 0 0.14912 TCTGC 889 1 0.255255 TCTGC 889 2 -0.0861993 TCTGG 890 0 0.271329 TCTGG 890 1 0.827016 TCTGG 890 2 0.461457 TCTGT 891 0 -0.598961 TCTGT 891 1 0.000863473 TCTGT 891 2 -0.452302 TCTTA 892 0 -0.164691 TCTTA 892 1 -0.297767 TCTTA 892 2 -0.338392 TCTTC 893 0 0.637128 TCTTC 893 1 0.159175 TCTTC 893 2 0.311593 TCTTG 894 0 -0.827261 TCTTG 894 1 0.506041 TCTTG 894 2 0.767625 TCTTT 895 0 -0.0486973 TCTTT 895 1 -0.304518 TCTTT 895 2 -0.829388 TGAAA 896 0 -0.35867 TGAAA 896 1 -0.118746 TGAAA 896 2 -0.178808 TGAAC 897 0 0.499688 TGAAC 897 1 -0.0877165 TGAAC 897 2 -0.0259942 TGAAG 898 0 0.408191 TGAAG 898 1 0.666108 TGAAG 898 2 0.877692 TGAAT 899 0 -0.260057 TGAAT 899 1 -0.3892 TGAAT 899 2 -0.7501 TGACA 900 0 -0.330997 TGACA 900 1 0.139689 TGACA 900 2 0.229018 TGACC 901 0 0.311434 TGACC 901 1 -0.503601 TGACC 901 2 0.0861882 TGACG 902 0 1.21138 TGACG 902 1 0.292351 TGACG 902 2 0.71354 TGACT 903 0 -0.455818 TGACT 903 1 -0.0128161 TGACT 903 2 -0.626445 TGAGA 904 0 -0.254549 TGAGA 904 1 0.0639045 TGAGA 904 2 0.145142 TGAGC 905 0 0.3375 TGAGC 905 1 -0.434786 TGAGC 905 2 -0.00745535 TGAGG 906 0 0.471035 TGAGG 906 1 0.409389 TGAGG 906 2 0.63365 TGAGT 907 0 -0.316424 TGAGT 907 1 -0.115258 TGAGT 907 2 -0.78835 TGATA 908 0 -0.0260848 TGATA 908 1 -0.475608 TGATA 908 2 -0.145517 TGATC 909 0 0.477017 TGATC 909 1 0.187034 TGATC 909 2 0.284824 TGATG 910 0 0.192086 TGATG 910 1 0.229316 TGATG 910 2 0.601137 TGATT 911 0 -0.423769 TGATT 911 1 0.0310351 TGATT 911 2 -0.669623 TGCAA 912 0 0.521267 TGCAA 912 1 0.437982 TGCAA 912 2 0.445871 TGCAC 913 0 0.488531 TGCAC 913 1 -0.232631 TGCAC 913 2 0.248372 TGCAG 914 0 -0.603694 TGCAG 914 1 0.123378 TGCAG 914 2 0.0321146 TGCAT 915 0 -0.382001 TGCAT 915 1 -0.487273 TGCAT 915 2 -0.713032 TGCCA 916 0 0.00192267 TGCCA 916 1 0.271256 TGCCA 916 2 0.51234 TGCCC 917 0 0.491072 TGCCC 917 1 -0.318819 TGCCC 917 2 0.0152816 TGCCG 918 0 0.0677538 TGCCG 918 1 -0.308564 TGCCG 918 2 0.495992 TGCCT 919 0 -0.405162 TGCCT 919 1 -0.015246 TGCCT 919 2 -0.998058 TGCGA 920 0 0.522821 TGCGA 920 1 -0.347776 TGCGA 920 2 0.246635 TGCGC 921 0 -0.305381 TGCGC 921 1 0.429331 TGCGC 921 2 -0.363794 TGCGG 922 0 -0.0189761 TGCGG 922 1 0.229337 TGCGG 922 2 0.656782 TGCGT 923 0 -0.557974 TGCGT 923 1 -0.224503 TGCGT 923 2 -0.939157 TGCTA 924 0 -0.644101 TGCTA 924 1 -0.363593 TGCTA 924 2 -0.137575 TGCTC 925 0 0.671374 TGCTC 925 1 0.0706731 TGCTC 925 2 0.171513 TGCTG 926 0 -0.0475755 TGCTG 926 1 -0.109354 TGCTG 926 2 0.800275 TGCTT 927 0 -0.0391452 TGCTT 927 1 0.196619 TGCTT 927 2 -0.902372 TGGAA 928 0 0.177638 TGGAA 928 1 -0.0999943 TGGAA 928 2 0.146601 TGGAC 929 0 -0.133357 TGGAC 929 1 0.036185 TGGAC 929 2 -0.0919436 TGGAG 930 0 0.115609 TGGAG 930 1 0.236073 TGGAG 930 2 0.486959 TGGAT 931 0 -0.243849 TGGAT 931 1 -0.0714145 TGGAT 931 2 -0.658532 TGGCA 932 0 -0.0493642 TGGCA 932 1 0.0762007 TGGCA 932 2 0.419765 TGGCC 933 0 0.68306 TGGCC 933 1 -0.636326 TGGCC 933 2 -0.120368 TGGCG 934 0 -0.426596 TGGCG 934 1 -0.0841737 TGGCG 934 2 0.463422 TGGCT 935 0 -0.463521 TGGCT 935 1 0.183926 TGGCT 935 2 -0.623604 TGGGA 936 0 0.244192 TGGGA 936 1 0.4199 TGGGA 936 2 0.14797 TGGGC 937 0 0.66438 TGGGC 937 1 0.210846 TGGGC 937 2 0.385049 TGGGG 938 0 -0.486057 TGGGG 938 1 -0.712369 TGGGG 938 2 0.0921646 TGGGT 939 0 -0.325402 TGGGT 939 1 -0.128751 TGGGT 939 2 -0.541887 TGGTA 940 0 -0.833222 TGGTA 940 1 -0.503989 TGGTA 940 2 -0.136174 TGGTC 941 0 0.0630456 TGGTC 941 1 -0.440208 TGGTC 941 2 -0.174521 TGGTG 942 0 -0.012339 TGGTG 942 1 0.342357 TGGTG 942 2 0.742602 TGGTT 943 0 0.285196 TGGTT 943 1 0.14705 TGGTT 943 2 -0.744776 TGTAA 944 0 0.28956 TGTAA 944 1 -4.58746 TGTAA 944 2 -0.0134039 TGTAC 945 0 0.184526 TGTAC 945 1 1.03397 TGTAC 945 2 0.274354 TGTAG 946 0 -0.0503937 TGTAG 946 1 -4.1957 TGTAG 946 2 0.378361 TGTAT 947 0 -0.416006 TGTAT 947 1 0.477726 TGTAT 947 2 -0.485127 TGTCA 948 0 0.148939 TGTCA 948 1 0.176283 TGTCA 948 2 0.354546 TGTCC 949 0 0.0600639 TGTCC 949 1 -0.117548 TGTCC 949 2 0.0647843 TGTCG 950 0 0.718724 TGTCG 950 1 0.193566 TGTCG 950 2 0.61639 TGTCT 951 0 -0.520278 TGTCT 951 1 -0.161933 TGTCT 951 2 -0.834266 TGTGA 952 0 0.35837 TGTGA 952 1 -4.43307 TGTGA 952 2 0.266916 TGTGC 953 0 0.368692 TGTGC 953 1 0.668316 TGTGC 953 2 -0.023255 TGTGG 954 0 0.150453 TGTGG 954 1 0.800806 TGTGG 954 2 0.484817 TGTGT 955 0 -0.92443 TGTGT 955 1 -0.467273 TGTGT 955 2 -0.776387 TGTTA 956 0 -0.856015 TGTTA 956 1 -0.232097 TGTTA 956 2 -0.0743477 TGTTC 957 0 0.513141 TGTTC 957 1 0.0786048 TGTTC 957 2 0.304218 TGTTG 958 0 -0.0762612 TGTTG 958 1 0.277028 TGTTG 958 2 0.504648 TGTTT 959 0 0.111935 TGTTT 959 1 -0.119906 TGTTT 959 2 -0.708087 TTAAA 960 0 -0.000941722 TTAAA 960 1 -0.182224 TTAAA 960 2 -0.282058 TTAAC 961 0 0.59458 TTAAC 961 1 0.0688105 TTAAC 961 2 0.543549 TTAAG 962 0 0.140831 TTAAG 962 1 0.680929 TTAAG 962 2 0.473125 TTAAT 963 0 -0.484518 TTAAT 963 1 -0.344399 TTAAT 963 2 -0.385537 TTACA 964 0 0.067241 TTACA 964 1 -0.0608007 TTACA 964 2 0.318287 TTACC 965 0 0.620674 TTACC 965 1 0.092274 TTACC 965 2 -0.128998 TTACG 966 0 -0.134648 TTACG 966 1 0.0357792 TTACG 966 2 0.905384 TTACT 967 0 -0.527498 TTACT 967 1 -0.00645494 TTACT 967 2 -0.710555 TTAGA 968 0 0.163724 TTAGA 968 1 0.181361 TTAGA 968 2 -0.127284 TTAGC 969 0 0.48194 TTAGC 969 1 0.016424 TTAGC 969 2 0.396783 TTAGG 970 0 0.171622 TTAGG 970 1 0.361872 TTAGG 970 2 0.481778 TTAGT 971 0 -0.628035 TTAGT 971 1 -0.388084 TTAGT 971 2 -0.453681 TTATA 972 0 -0.544386 TTATA 972 1 -0.352829 TTATA 972 2 -0.146004 TTATC 973 0 0.678006 TTATC 973 1 0.30986 TTATC 973 2 0.454476 TTATG 974 0 -0.357011 TTATG 974 1 0.303718 TTATG 974 2 0.789223 TTATT 975 0 0.0404599 TTATT 975 1 -0.10584 TTATT 975 2 -0.976663 TTCAA 976 0 0.300636 TTCAA 976 1 0.183367 TTCAA 976 2 -0.111125 TTCAC 977 0 0.173327 TTCAC 977 1 -0.237528 TTCAC 977 2 0.127593 TTCAG 978 0 -0.250672 TTCAG 978 1 0.307931 TTCAG 978 2 0.556343 TTCAT 979 0 -0.383017 TTCAT 979 1 -0.316872 TTCAT 979 2 -0.40901 TTCCA 980 0 0.327932 TTCCA 980 1 0.344772 TTCCA 980 2 0.507105 TTCCC 981 0 0.541059 TTCCC 981 1 -0.356748 TTCCC 981 2 -0.319592 TTCCG 982 0 0.113711 TTCCG 982 1 -0.242963 TTCCG 982 2 0.494728 TTCCT 983 0 -0.694658 TTCCT 983 1 -0.0958208 TTCCT 983 2 -0.517397 TTCGA 984 0 0.15339 TTCGA 984 1 0.232998 TTCGA 984 2 -0.0975659 TTCGC 985 0 0.228348 TTCGC 985 1 -0.116003 TTCGC 985 2 0.247054 TTCGG 986 0 0.427924 TTCGG 986 1 -0.310857 TTCGG 986 2 0.539655 TTCGT 987 0 -0.674518 TTCGT 987 1 -0.0794681 TTCGT 987 2 -0.422884 TTCTA 988 0 -0.449188 TTCTA 988 1 -0.156001 TTCTA 988 2 -0.129035 TTCTC 989 0 0.308599 TTCTC 989 1 -0.237949 TTCTC 989 2 0.151611 TTCTG 990 0 -0.0461474 TTCTG 990 1 -0.0129983 TTCTG 990 2 0.782222 TTCTT 991 0 0.0385307 TTCTT 991 1 0.144221 TTCTT 991 2 -0.636885 TTGAA 992 0 0.33554 TTGAA 992 1 -0.195089 TTGAA 992 2 -0.277226 TTGAC 993 0 -0.139829 TTGAC 993 1 -0.205769 TTGAC 993 2 0.447957 TTGAG 994 0 0.00915266 TTGAG 994 1 0.368192 TTGAG 994 2 0.402498 TTGAT 995 0 -0.395879 TTGAT 995 1 0.03932 TTGAT 995 2 -0.316966 TTGCA 996 0 -0.338661 TTGCA 996 1 -0.0832106 TTGCA 996 2 0.233754 TTGCC 997 0 0.567349 TTGCC 997 1 -0.0642656 TTGCC 997 2 0.435236 TTGCG 998 0 0.344928 TTGCG 998 1 -0.0161294 TTGCG 998 2 0.233754 TTGCT 999 0 -0.103358 TTGCT 999 1 0.0764179 TTGCT 999 2 -0.512503 TTGGA 1000 0 0.162058 TTGGA 1000 1 -0.104459 TTGGA 1000 2 -0.259338 TTGGC 1001 0 0.519421 TTGGC 1001 1 0.0108053 TTGGC 1001 2 0.29759 TTGGG 1002 0 0.0351566 TTGGG 1002 1 0.0271604 TTGGG 1002 2 0.790528 TTGGT 1003 0 -0.556356 TTGGT 1003 1 0.0645634 TTGGT 1003 2 -0.686704 TTGTA 1004 0 -0.554116 TTGTA 1004 1 -0.248818 TTGTA 1004 2 0.0161113 TTGTC 1005 0 0.395205 TTGTC 1005 1 -0.0182924 TTGTC 1005 2 0.311865 TTGTG 1006 0 -0.387011 TTGTG 1006 1 0.311713 TTGTG 1006 2 0.599425 TTGTT 1007 0 0.178723 TTGTT 1007 1 -0.0282052 TTGTT 1007 2 -0.66963 TTTAA 1008 0 0.0933796 TTTAA 1008 1 -5.0569 TTTAA 1008 2 -0.200491 TTTAC 1009 0 0.385479 TTTAC 1009 1 0.703623 TTTAC 1009 2 0.26526 TTTAG 1010 0 0.0141198 TTTAG 1010 1 -4.38703 TTTAG 1010 2 0.831718 TTTAT 1011 0 -0.324465 TTTAT 1011 1 0.582914 TTTAT 1011 2 -0.719575 TTTCA 1012 0 -0.289674 TTTCA 1012 1 -0.132926 TTTCA 1012 2 0.284319 TTTCC 1013 0 0.287724 TTTCC 1013 1 0.0178438 TTTCC 1013 2 0.116815 TTTCG 1014 0 0.96196 TTTCG 1014 1 0.26747 TTTCG 1014 2 0.566683 TTTCT 1015 0 -0.298623 TTTCT 1015 1 0.0267 TTTCT 1015 2 -0.571129 TTTGA 1016 0 0.311326 TTTGA 1016 1 -5.34718 TTTGA 1016 2 0.0552263 TTTGC 1017 0 0.140704 TTTGC 1017 1 0.653759 TTTGC 1017 2 0.0009023 TTTGG 1018 0 0.134055 TTTGG 1018 1 0.580324 TTTGG 1018 2 0.606359 TTTGT 1019 0 -0.599652 TTTGT 1019 1 -0.059096 TTTGT 1019 2 -0.667419 TTTTA 1020 0 -0.441396 TTTTA 1020 1 -0.149944 TTTTA 1020 2 -0.00398463 TTTTC 1021 0 0.445292 TTTTC 1021 1 0.324544 TTTTC 1021 2 -0.0509606 TTTTG 1022 0 0.110587 TTTTG 1022 1 0.581076 TTTTG 1022 2 1.01243 TTTTT 1023 0 -0.126587 TTTTT 1023 1 -0.572953 TTTTT 1023 2 -1.26449 # Donors per acceptor to build exons maximum_number_of_donors_per_acceptor_site 5 # GENE MODEL: Rules about gene assembling (GenAmic) General_Gene_Model # INTRAgenic connections First+:Internal+ Internal+:Terminal+ 60:3500 block Terminal-:Internal- First-:Internal- 60:3500 blockr # External features Promoter+ First+:Single+ 50:4000 Terminal+:Single+ aataaa+ 50:4000 First-:Single- Promoter- 50:4000 aataaa- Single-:Terminal- 50:4000 # INTERgenic conections aataaa+:Terminal+:Single+ Single+:First+:Promoter+ 500:Infinity aataaa+:Terminal+:Single+ Single-:Terminal-:aataaa- 500:Infinity Promoter-:First-:Single- Single+:First+:Promoter+ 500:Infinity Promoter-:First-:Single- Single-:Terminal-:aataaa- 500:Infinity # BEGINNING and END of prediction Begin+ First+:Internal+:Terminal+:Single+ 0:Infinity Begin- First-:Internal-:Terminal-:Single- 0:Infinity First+:Internal+:Terminal+:Single+ End+ 0:Infinity First-:Internal-:Terminal-:Single- End- 0:Infinity