# geneid parameter file: S.japonica. # Comment lines must begin with '#' # Non-homology penalty NO_SCORE 0 # Number of isochores number_of_isochores 1 # PARAMETERS FROM ISOCHORE 1 # %GC boundaries_of_isochore 0 100 # Exons score: cutoffs Absolute_cutoff_exons -150 -150 -150 -150 Coding_cutoff_oligos -100 -150 -150 -150 # Exon score: factors Site_factor 0.55 0.55 0.55 0.55 Exon_factor 0.45 0.45 0.45 0.45 HSP_factor 1.0 1.0 1.0 1.0 Exon_weigths -4.00 -4.00 -4.00 -4.00 # Site prediction: Position Weight Arrays # Lenght, Offset, Cutoff and order (Markov model) Start_profile 12 3 -5 2 # Transition probabilities at every position 1 AAA -0.051004 1 AAC -0.685974 1 AAG 0.422736 1 AAT 0.0657496 1 ACA -0.166304 1 ACC -1.61231 1 ACG 1.11831 1 ACT -0.296679 1 AGA -0.316313 1 AGC -1.1488 1 AGG 1.35292 1 AGT -1.89085 1 ATA -0.0164697 1 ATC 0.455019 1 ATG 0.0487766 1 ATT -0.325965 1 CAA -0.115894 1 CAC -2.20373 1 CAG 0.730586 1 CAT -0.153064 1 CCA -0.0897851 1 CCC 0.768657 1 CCG 0.717689 1 CCT -1.75314 1 CGA 0.718744 1 CGC -0.737287 1 CGG -0.451326 1 CGT -1.37449 1 CTA 0.147022 1 CTC -1.9126 1 CTG 0.890816 1 CTT -1.14733 1 GAA 0.544209 1 GAC -1.76239 1 GAG 0.347102 1 GAT -0.978741 1 GCA 0.264761 1 GCC -1.97163 1 GCG 0.964674 1 GCT -0.315785 1 GGA 0.480345 1 GGC 0.743717 1 GGG -1.38481 1 GGT -2.03945 1 GTA 0.281068 1 GTC 0.0457925 1 GTG 0.59625 1 GTT -1.52325 1 TAA 0.477538 1 TAC -1.39789 1 TAG 0.328092 1 TAT -0.388876 1 TCA 0.302723 1 TCC -0.975453 1 TCG 0.386812 1 TCT -0.381674 1 TGA 0.327569 1 TGC 0.763083 1 TGG 0.267119 1 TGT -2.76724 1 TTA 0.0643669 1 TTC -0.116114 1 TTG 0.691624 1 TTT -0.782647 2 AAA -0.0777103 2 AAC -0.380508 2 AAG -0.627509 2 AAT 0.383048 2 ACA 0.14019 2 ACC -0.419581 2 ACG -0.368453 2 ACT 0.0646033 2 AGA -0.398719 2 AGC -0.897076 2 AGG -0.209457 2 AGT 0.430037 2 ATA 0.44925 2 ATC 0.139966 2 ATG -0.525785 2 ATT -0.300836 2 CAA -0.017922 2 CAC -0.826338 2 CAG 0.718115 2 CAT -0.299298 2 CCA 0.101013 2 CCC -0.717364 2 CCG -0.595385 2 CCT 0.323614 2 CGA 0.012462 2 CGC 0.448901 2 CGG 0.480403 2 CGT -0.56902 2 CTA -0.677265 2 CTC 1.22128 2 CTG -0.475642 2 CTT -0.375377 2 GAA -0.111918 2 GAC 1.01541 2 GAG -2.05473 2 GAT -0.144685 2 GCA -0.00586543 2 GCC 0.992661 2 GCG -1.01906 2 GCT -0.569983 2 GGA 0.592307 2 GGC 0.289981 2 GGG 0.516585 2 GGT -2.31117 2 GTA -0.250721 2 GTC 0.647593 2 GTG 0.236214 2 GTT -0.337994 2 TAA 0.253875 2 TAC 0.463711 2 TAG -0.117862 2 TAT -0.769013 2 TCA -0.380137 2 TCC 0.776264 2 TCG 0.408534 2 TCT -0.52302 2 TGA -0.147373 2 TGC 0.434492 2 TGG 0.462679 2 TGT -0.432755 2 TTA 0.327642 2 TTC 0.468545 2 TTG -0.432962 2 TTT -0.569319 3 AAA -0.387929 3 AAC 0.459368 3 AAG 0.518376 3 AAT -0.398658 3 ACA 0.240311 3 ACC -0.692297 3 ACG -0.0735045 3 ACT -0.0299562 3 AGA 0.0475099 3 AGC -0.284268 3 AGG 0.0166065 3 AGT 0.0424772 3 ATA 0.33311 3 ATC 0.0845507 3 ATG -3.20352 3 ATT 0.337979 3 CAA 0.423573 3 CAC -1.62707 3 CAG 0.333772 3 CAT -0.624351 3 CCA -0.11614 3 CCC 0.26327 3 CCG -1.66981 3 CCT 0.397296 3 CGA -1.65764 3 CGC -0.711496 3 CGG -0.525536 3 CGT 1.09041 3 CTA 0.198851 3 CTC -1.39888 3 CTG -0.185299 3 CTT 0.317088 3 GAA 0.348086 3 GAC -0.222491 3 GAG 0.3547 3 GAT -0.924779 3 GCA 0.133214 3 GCC 0.805789 3 GCG -1.87101 3 GCT -0.353616 3 GGA -0.647953 3 GGC 0.889998 3 GGG 0.3714 3 GGT -0.647953 3 GTA -0.57709 3 GTC 0.307385 3 GTG 0.59778 3 GTT -0.581579 3 TAA -0.42959 3 TAC 0.837856 3 TAG 0.165115 3 TAT -0.270546 3 TCA -0.214879 3 TCC -2.02672 3 TCG -0.527802 3 TCT 0.7492 3 TGA 0.583989 3 TGC 0.571114 3 TGG -1.31223 3 TGT -1.82638 3 TTA -0.625448 3 TTC -0.38173 3 TTG 0.109556 3 TTT 0.411566 4 AAA 0 4 AAC -9999 4 AAG -9999 4 AAT -9999 4 ACA 0 4 ACC -9999 4 ACG -9999 4 ACT -9999 4 AGA 0 4 AGC -9999 4 AGG -9999 4 AGT -9999 4 ATA 0 4 ATC -9999 4 ATG -9999 4 ATT -9999 4 CAA 0 4 CAC -9999 4 CAG -9999 4 CAT -9999 4 CCA 0 4 CCC -9999 4 CCG -9999 4 CCT -9999 4 CGA 0 4 CGC -9999 4 CGG -9999 4 CGT -9999 4 CTA 0 4 CTC -9999 4 CTG -9999 4 CTT -9999 4 GAA 0 4 GAC -9999 4 GAG -9999 4 GAT -9999 4 GCA 0 4 GCC -9999 4 GCG -9999 4 GCT -9999 4 GGA 0 4 GGC -9999 4 GGG -9999 4 GGT -9999 4 GTA 0 4 GTC -9999 4 GTG -9999 4 GTT -9999 4 TAA 0 4 TAC -9999 4 TAG -9999 4 TAT -9999 4 TCA 0 4 TCC -9999 4 TCG -9999 4 TCT -9999 4 TGA 0 4 TGC -9999 4 TGG -9999 4 TGT -9999 4 TTA 0 4 TTC -9999 4 TTG -9999 4 TTT -9999 5 AAA -9999 5 AAC -9999 5 AAG -9999 5 AAT 0 5 ACA -9999 5 ACC -9999 5 ACG -9999 5 ACT -9999 5 AGA -9999 5 AGC -9999 5 AGG -9999 5 AGT -9999 5 ATA -9999 5 ATC -9999 5 ATG -9999 5 ATT -9999 5 CAA -9999 5 CAC -9999 5 CAG -9999 5 CAT 0 5 CCA -9999 5 CCC -9999 5 CCG -9999 5 CCT -9999 5 CGA -9999 5 CGC -9999 5 CGG -9999 5 CGT -9999 5 CTA -9999 5 CTC -9999 5 CTG -9999 5 CTT -9999 5 GAA -9999 5 GAC -9999 5 GAG -9999 5 GAT 0 5 GCA -9999 5 GCC -9999 5 GCG -9999 5 GCT -9999 5 GGA -9999 5 GGC -9999 5 GGG -9999 5 GGT -9999 5 GTA -9999 5 GTC -9999 5 GTG -9999 5 GTT -9999 5 TAA -9999 5 TAC -9999 5 TAG -9999 5 TAT 0 5 TCA -9999 5 TCC -9999 5 TCG -9999 5 TCT -9999 5 TGA -9999 5 TGC -9999 5 TGG -9999 5 TGT -9999 5 TTA -9999 5 TTC -9999 5 TTG -9999 5 TTT -9999 6 AAA -9999 6 AAC -9999 6 AAG -9999 6 AAT -9999 6 ACA -9999 6 ACC -9999 6 ACG -9999 6 ACT -9999 6 AGA -9999 6 AGC -9999 6 AGG -9999 6 AGT -9999 6 ATA -9999 6 ATC -9999 6 ATG 0 6 ATT -9999 6 CAA -9999 6 CAC -9999 6 CAG -9999 6 CAT -9999 6 CCA -9999 6 CCC -9999 6 CCG -9999 6 CCT -9999 6 CGA -9999 6 CGC -9999 6 CGG -9999 6 CGT -9999 6 CTA -9999 6 CTC -9999 6 CTG -9999 6 CTT -9999 6 GAA -9999 6 GAC -9999 6 GAG -9999 6 GAT -9999 6 GCA -9999 6 GCC -9999 6 GCG -9999 6 GCT -9999 6 GGA -9999 6 GGC -9999 6 GGG -9999 6 GGT -9999 6 GTA -9999 6 GTC -9999 6 GTG -9999 6 GTT -9999 6 TAA -9999 6 TAC -9999 6 TAG -9999 6 TAT -9999 6 TCA -9999 6 TCC -9999 6 TCG -9999 6 TCT -9999 6 TGA -9999 6 TGC -9999 6 TGG -9999 6 TGT -9999 6 TTA -9999 6 TTC -9999 6 TTG -9999 6 TTT -9999 7 AAA -9999 7 AAC -9999 7 AAG -9999 7 AAT -9999 7 ACA -9999 7 ACC -9999 7 ACG -9999 7 ACT -9999 7 AGA -9999 7 AGC -9999 7 AGG -9999 7 AGT -9999 7 ATA -9999 7 ATC -9999 7 ATG -9999 7 ATT -9999 7 CAA -9999 7 CAC -9999 7 CAG -9999 7 CAT -9999 7 CCA -9999 7 CCC -9999 7 CCG -9999 7 CCT -9999 7 CGA -9999 7 CGC -9999 7 CGG -9999 7 CGT -9999 7 CTA -9999 7 CTC -9999 7 CTG -9999 7 CTT -9999 7 GAA -9999 7 GAC -9999 7 GAG -9999 7 GAT -9999 7 GCA -9999 7 GCC -9999 7 GCG -9999 7 GCT -9999 7 GGA -9999 7 GGC -9999 7 GGG -9999 7 GGT -9999 7 GTA -9999 7 GTC -9999 7 GTG -9999 7 GTT -9999 7 TAA -9999 7 TAC -9999 7 TAG -9999 7 TAT -9999 7 TCA -9999 7 TCC -9999 7 TCG -9999 7 TCT -9999 7 TGA -0.0257587 7 TGC -0.336203 7 TGG 0.629118 7 TGT -0.272914 7 TTA -9999 7 TTC -9999 7 TTG -9999 7 TTT -9999 8 AAA -9999 8 AAC -9999 8 AAG -9999 8 AAT -9999 8 ACA -9999 8 ACC -9999 8 ACG -9999 8 ACT -9999 8 AGA -9999 8 AGC -9999 8 AGG -9999 8 AGT -9999 8 ATA -9999 8 ATC -9999 8 ATG -9999 8 ATT -9999 8 CAA -9999 8 CAC -9999 8 CAG -9999 8 CAT -9999 8 CCA -9999 8 CCC -9999 8 CCG -9999 8 CCT -9999 8 CGA -9999 8 CGC -9999 8 CGG -9999 8 CGT -9999 8 CTA -9999 8 CTC -9999 8 CTG -9999 8 CTT -9999 8 GAA 0.0775532 8 GAC 0.39526 8 GAG 0.356133 8 GAT -0.656198 8 GCA -0.387882 8 GCC 0.844738 8 GCG -0.860859 8 GCT -0.00449316 8 GGA -0.100284 8 GGC 0.549091 8 GGG -0.227873 8 GGT -0.179287 8 GTA -1.08448 8 GTC 1.09492 8 GTG -1.92234 8 GTT 0.109702 8 TAA -9999 8 TAC -9999 8 TAG -9999 8 TAT -9999 8 TCA -9999 8 TCC -9999 8 TCG -9999 8 TCT -9999 8 TGA -9999 8 TGC -9999 8 TGG -9999 8 TGT -9999 8 TTA -9999 8 TTC -9999 8 TTG -9999 8 TTT -9999 9 AAA 0.107408 9 AAC -0.565156 9 AAG 0.245399 9 AAT -0.0785817 9 ACA -0.11971 9 ACC -0.67243 9 ACG -0.467753 9 ACT 0.419642 9 AGA -0.56667 9 AGC 0.93528 9 AGG -0.578918 9 AGT 0.0270796 9 ATA -0.262923 9 ATC 0.788068 9 ATG -2.36062 9 ATT 0.285491 9 CAA 0.403216 9 CAC -1.63184 9 CAG -0.000783695 9 CAT -0.021611 9 CCA -0.0126525 9 CCC -1.23425 9 CCG 0.49186 9 CCT -0.0666002 9 CGA -1.06149 9 CGC 0.0540677 9 CGG -0.214195 9 CGT 0.5368 9 CTA -0.679008 9 CTC 0.476682 9 CTG 0.461732 9 CTT -0.317269 9 GAA -0.470695 9 GAC -0.12335 9 GAG 0.334622 9 GAT 0.256704 9 GCA -0.160705 9 GCC -0.139315 9 GCG -0.16071 9 GCT 0.257149 9 GGA -0.0387864 9 GGC -0.0247722 9 GGG -0.0662311 9 GGT 0.0654615 9 GTA -1.15126 9 GTC -0.080737 9 GTG 0.0192603 9 GTT 0.362221 9 TAA -1.98682 9 TAC 0.291412 9 TAG -1.38832 9 TAT 0.640045 9 TCA -0.283384 9 TCC -0.860827 9 TCG 0.0695464 9 TCT 0.411622 9 TGA -0.996515 9 TGC -0.213685 9 TGG -0.411331 9 TGT 0.675653 9 TTA 0.396713 9 TTC -0.380749 9 TTG -0.034376 9 TTT -0.216453 10 AAA -0.250977 10 AAC -0.25203 10 AAG 0.627129 10 AAT -0.106241 10 ACA 0.343579 10 ACC -1.1838 10 ACG 0.437165 10 ACT -0.504882 10 AGA -0.658815 10 AGC 0.213022 10 AGG -0.346917 10 AGT 0.43012 10 ATA 0.376762 10 ATC -0.314655 10 ATG -0.301703 10 ATT -0.0812029 10 CAA -0.0237634 10 CAC -2.58798 10 CAG 0.908527 10 CAT -0.28026 10 CCA -2.16675 10 CCC -1.12645 10 CCG 1.57859 10 CCT -0.0960445 10 CGA 0.200956 10 CGC -0.161425 10 CGG -0.233312 10 CGT -0.0673078 10 CTA -0.066529 10 CTC 0.103886 10 CTG 0.645456 10 CTT -0.70447 10 GAA -2.10143 10 GAC 0.358185 10 GAG 0.857324 10 GAT 0.371711 10 GCA -0.538598 10 GCC -1.16065 10 GCG 0.335191 10 GCT 0.405773 10 GGA 0.30543 10 GGC 0.752878 10 GGG -0.675071 10 GGT -1.38548 10 GTA 0.0529205 10 GTC -1.70968 10 GTG 1.02059 10 GTT -1.06986 10 TAA 0.188304 10 TAC 0.332077 10 TAG 0.126323 10 TAT -0.656125 10 TCA 0.0923191 10 TCC 0.441182 10 TCG -0.134804 10 TCT -0.366811 10 TGA -0.32835 10 TGC 0.563764 10 TGG 0.210405 10 TGT -0.160099 10 TTA 0.320484 10 TTC 0.0214479 10 TTG 0.440395 10 TTT -1.19851 11 AAA 0.0886493 11 AAC 0.297674 11 AAG -0.0606844 11 AAT -0.284524 11 ACA -0.671099 11 ACC 0.23656 11 ACG 0.859335 11 ACT -0.150372 11 AGA 0.494828 11 AGC 0.337209 11 AGG 0.567445 11 AGT -3.26225 11 ATA -2.74557 11 ATC 0.582102 11 ATG -0.19931 11 ATT 0.289603 11 CAA 0.826271 11 CAC -1.90357 11 CAG -0.294134 11 CAT -0.844872 11 CCA 0.0971974 11 CCC -0.397232 11 CCG -0.49179 11 CCT 0.141527 11 CGA 0.850069 11 CGC -1.11507 11 CGG -1.28943 11 CGT -0.903766 11 CTA -2.16338 11 CTC 0.933002 11 CTG -1.89115 11 CTT 0.385779 11 GAA 0.15555 11 GAC 0.549459 11 GAG 0.442063 11 GAT -1.17311 11 GCA 0.272702 11 GCC 0.0455934 11 GCG 0.614423 11 GCT -0.912857 11 GGA -1.92843 11 GGC 0.42488 11 GGG -1.0696 11 GGT 0.627956 11 GTA -2.6564 11 GTC 0.873475 11 GTG -0.669194 11 GTT 0.262698 11 TAA 0.436982 11 TAC 0.266934 11 TAG 0.098869 11 TAT -0.897325 11 TCA -0.742087 11 TCC 0.544416 11 TCG 1.17441 11 TCT -1.10299 11 TGA 0.048291 11 TGC -1.14244 11 TGG 0.470368 11 TGT -0.0845901 11 TTA -1.29553 11 TTC 0.683575 11 TTG 0.181252 11 TTT -0.0587303 12 AAA -0.0867869 12 AAC -0.755711 12 AAG 0.270973 12 AAT 0.193703 12 ACA 0.416273 12 ACC 0.0687001 12 ACG 0.0111284 12 ACT -0.84413 12 AGA -0.386588 12 AGC 0.624511 12 AGG -2.07757 12 AGT 0.284156 12 ATA -0.890053 12 ATC 0.217033 12 ATG 0.255677 12 ATT 0.158203 12 CAA 0.264764 12 CAC -0.205991 12 CAG -0.190274 12 CAT -0.0884503 12 CCA -0.0387462 12 CCC 0.467336 12 CCG 0.947644 12 CCT -2.08221 12 CGA -0.376367 12 CGC 0.36231 12 CGG 0.267566 12 CGT -0.0550271 12 CTA -0.325526 12 CTC 0.948828 12 CTG -0.219723 12 CTT -0.387006 12 GAA -0.429127 12 GAC -0.380159 12 GAG 0.756477 12 GAT 0.000935059 12 GCA 0.516206 12 GCC -1.28599 12 GCG -1.1459 12 GCT -0.208928 12 GGA 0.322678 12 GGC -0.411005 12 GGG -0.0584454 12 GGT -0.147827 12 GTA -0.524181 12 GTC 0.0585986 12 GTG -0.372746 12 GTT 0.410032 12 TAA -0.904814 12 TAC 1.13268 12 TAG -0.321254 12 TAT -0.931701 12 TCA -0.860259 12 TCC 0.364951 12 TCG 0.201848 12 TCT 0.336265 12 TGA -2.23464 12 TGC 0.0420487 12 TGG -1.56739 12 TGT 0.8397 12 TTA -1.03869 12 TTC 0.844807 12 TTG -0.0969997 12 TTT -0.18974 Acceptor_profile 23 19 -7 1 # Transition probabilities at every position 1 AA 0.0424679 1 AC 0.0172199 1 AG -1.27805 1 AT 0.305006 1 CA -0.445457 1 CC 0.363843 1 CG -1.91209 1 CT 0.450232 1 GA -0.554024 1 GC 0.580707 1 GG -0.812442 1 GT 0.2638 1 TA -0.156771 1 TC -0.071178 1 TG -0.602988 1 TT 0.348617 2 AA -0.218494 2 AC -0.0346668 2 AG -0.803124 2 AT 0.405923 2 CA -0.220809 2 CC -0.3116 2 CG -0.826243 2 CT 0.454195 2 GA -0.757115 2 GC 0.273131 2 GG -0.797348 2 GT 0.466875 2 TA -0.00348687 2 TC -0.169471 2 TG -0.923809 2 TT 0.344535 3 AA 0.0315814 3 AC -0.244421 3 AG -1.11981 3 AT 0.362946 3 CA -0.388354 3 CC 0.210309 3 CG 0.127156 3 CT 0.172436 3 GA -0.456883 3 GC -0.0321324 3 GG -0.702478 3 GT 0.444387 3 TA -0.318609 3 TC -0.343302 3 TG -0.252535 3 TT 0.407332 4 AA -0.127645 4 AC -0.307359 4 AG -0.516784 4 AT 0.415119 4 CA -0.275103 4 CC 0.178209 4 CG -0.350066 4 CT 0.280844 4 GA -0.598017 4 GC -0.0290457 4 GG -0.37237 4 GT 0.461565 4 TA -0.253539 4 TC -0.0465832 4 TG -0.73849 4 TT 0.426659 5 AA -0.596559 5 AC 0.529737 5 AG -1.06272 5 AT 0.379962 5 CA -0.339318 5 CC -0.00383694 5 CG -0.484347 5 CT 0.404389 5 GA -0.550734 5 GC -0.14487 5 GG -1.69138 5 GT 0.620771 5 TA -0.0527585 5 TC 0.0198518 5 TG -0.746162 5 TT 0.304066 6 AA 0.150051 6 AC -0.192127 6 AG -1.51306 6 AT 0.307963 6 CA -0.340626 6 CC 0.168209 6 CG -1.13957 6 CT 0.409374 6 GA -0.27505 6 GC 0.704323 6 GG -2.96563 6 GT 0.150833 6 TA -0.269721 6 TC -0.0342284 6 TG -0.499191 6 TT 0.353978 7 AA -0.198874 7 AC 0.0126233 7 AG -1.42003 7 AT 0.496858 7 CA -0.583837 7 CC -0.38433 7 CG 0.197093 7 CT 0.426465 7 GA -0.341686 7 GC -0.0888774 7 GG -0.372995 7 GT 0.370301 7 TA 0.0733175 7 TC -0.0298643 7 TG -0.817267 7 TT 0.259403 8 AA -0.343882 8 AC 0.142347 8 AG -0.814573 8 AT 0.428213 8 CA -0.73518 8 CC -0.104775 8 CG -0.307756 8 CT 0.561915 8 GA -0.452509 8 GC -0.602546 8 GG -0.336404 8 GT 0.547324 8 TA -0.182596 8 TC 0.0239674 8 TG -0.924785 8 TT 0.384387 9 AA -0.0734934 9 AC -0.109789 9 AG -1.1911 9 AT 0.418596 9 CA -0.292155 9 CC 0.0201351 9 CG -0.534292 9 CT 0.371016 9 GA -0.468225 9 GC -0.557738 9 GG -0.445066 9 GT 0.535447 9 TA 0.0226418 9 TC 0.10214 9 TG -1.40522 9 TT 0.308629 10 AA -0.162837 10 AC 0.445734 10 AG -1.75702 10 AT 0.297625 10 CA -0.268157 10 CC -0.768986 10 CG -0.284488 10 CT 0.495995 10 GA 0.396631 10 GC -1.05061 10 GG -2.71434 10 GT 0.278531 10 TA 0.0107525 10 TC -0.175005 10 TG -0.646593 10 TT 0.295688 11 AA -0.347992 11 AC 0.54245 11 AG -1.48298 11 AT 0.317827 11 CA 0.0411239 11 CC -0.0991688 11 CG -1.31748 11 CT 0.277313 11 GA -0.656575 11 GC 0.171826 11 GG -0.472885 11 GT 0.461702 11 TA -0.159515 11 TC -0.429227 11 TG -0.821149 11 TT 0.48005 12 AA -0.241831 12 AC -0.150499 12 AG -1.11994 12 AT 0.537492 12 CA -0.0119672 12 CC -0.0357109 12 CG -0.31446 12 CT 0.12857 12 GA -0.105717 12 GC -1.12706 12 GG -0.251291 12 GT 0.397399 12 TA -0.412426 12 TC -0.0883951 12 TG -1.01618 12 TT 0.519395 13 AA -0.6085 13 AC -0.346807 13 AG -1.35076 13 AT 0.73908 13 CA -0.337492 13 CC 0.225232 13 CG -0.78313 13 CT 0.319856 13 GA -0.303385 13 GC -0.340541 13 GG -0.0996335 13 GT 0.327435 13 TA -0.0534005 13 TC -0.167616 13 TG -0.657207 13 TT 0.330466 14 AA -0.355009 14 AC -0.856995 14 AG -1.49983 14 AT 0.742024 14 CA -0.799541 14 CC 0.116552 14 CG -1.86239 14 CT 0.685757 14 GA -0.553897 14 GC 0.311187 14 GG -0.835221 14 GT 0.424717 14 TA -0.346164 14 TC -0.165751 14 TG -0.658973 14 TT 0.477864 15 AA -0.566574 15 AC 0.30808 15 AG -1.39468 15 AT 0.530006 15 CA -0.988145 15 CC 0.236121 15 CG -1.18756 15 CT 0.610765 15 GA -0.953961 15 GC -0.660424 15 GG -1.33249 15 GT 0.760037 15 TA -0.811246 15 TC -0.464715 15 TG -1.40048 15 TT 0.707058 16 AA 0.309647 16 AC 0.143735 16 AG -2.07217 16 AT 0.0887606 16 CA -0.180083 16 CC -1.01575 16 CG -0.117322 16 CT 0.436374 16 GA -0.454646 16 GC 0.678521 16 GG -0.29795 16 GT 0.0105162 16 TA -0.226131 16 TC -0.235057 16 TG -0.354948 16 TT 0.393782 17 AA -0.702139 17 AC 0.563016 17 AG -4.02488 17 AT 0.486137 17 CA -1.30859 17 CC 0.287617 17 CG -1.66304 17 CT 0.667871 17 GA -0.904679 17 GC 0.0413176 17 GG -1.80621 17 GT 0.726279 17 TA -0.974089 17 TC 0.215515 17 TG -4.72681 17 TT 0.62311 18 AA 0 18 AC -9999 18 AG -9999 18 AT -9999 18 CA 0 18 CC -9999 18 CG -9999 18 CT -9999 18 GA 0 18 GC -9999 18 GG -9999 18 GT -9999 18 TA 0 18 TC -9999 18 TG -9999 18 TT -9999 19 AA -9999 19 AC -9999 19 AG 0 19 AT -9999 19 CA -9999 19 CC -9999 19 CG -9999 19 CT -9999 19 GA -9999 19 GC -9999 19 GG -9999 19 GT -9999 19 TA -9999 19 TC -9999 19 TG -9999 19 TT -9999 20 AA -9999 20 AC -9999 20 AG -9999 20 AT -9999 20 CA -9999 20 CC -9999 20 CG -9999 20 CT -9999 20 GA 0.0983713 20 GC -0.5269 20 GG 0.930507 20 GT -0.75609 20 TA -9999 20 TC -9999 20 TG -9999 20 TT -9999 21 AA -0.294482 21 AC -0.0770516 21 AG 0.194857 21 AT 0.209858 21 CA 0.0647835 21 CC 0.121287 21 CG -0.689831 21 CT 0.0412483 21 GA -0.429101 21 GC 0.0428981 21 GG -0.0504057 21 GT 0.265454 21 TA -0.261717 21 TC 0.362381 21 TG 0.0290776 21 TT -0.0332583 22 AA -0.113241 22 AC 0.575953 22 AG -0.750601 22 AT 0.0778352 22 CA -0.447443 22 CC 0.214324 22 CG 0.070127 22 CT 0.259953 22 GA 0.0100976 22 GC 0.301511 22 GG -0.12858 22 GT -0.10201 22 TA -0.215463 22 TC 0.155952 22 TG 0.0377934 22 TT 0.0567472 23 AA -0.244194 23 AC 0.0411683 23 AG 0.0136893 23 AT 0.184955 23 CA -0.261934 23 CC -0.00438433 23 CG 0.605691 23 CT -0.0776972 23 GA 0.121455 23 GC -0.129295 23 GG 0.50308 23 GT -0.454617 23 TA -0.084506 23 TC 0.578893 23 TG 0.0138698 23 TT -0.367715 Donor_profile 11 3 -7.5 0 # Transition probabilities at every position 1 A 0.26964 1 C 0.0449974 1 G -0.312449 1 T -0.172446 2 A 0.241305 2 C 0.421816 2 G -0.0436067 2 T -0.608835 3 A 0.604569 3 C -0.407645 3 G -0.164161 3 T -0.611836 4 A -0.204149 4 C -0.995472 4 G 1.20329 4 T -0.895998 5 A -9999 5 C -9999 5 G 0 5 T -9999 6 A -9999 6 C -9999 6 G -9999 6 T 0 7 A 1.08325 7 C -3.39881 7 G -0.974925 7 T -1.21636 8 A 0.726581 8 C -0.886106 8 G -0.804587 8 T -0.496416 9 A -1.04682 9 C -1.46772 9 G 1.45515 9 T -0.941738 10 A -0.698657 10 C -0.461892 10 G -0.704655 10 T 0.609997 11 A -0.399138 11 C 0.00841351 11 G -0.68639 11 T 0.428896 Stop_profile 4 0 -9999 0 # Transition probabilities at every position 1 A 0 1 C 0 1 G 0 1 T 0 2 A -9999 2 C -9999 2 G -9999 2 T 0.000 3 A 0.000 3 C -9999 3 G 0.000 3 T -9999 4 A 0.000 4 C -9999 4 G 0.000 4 T -9999 # Exon prediction: Markov model # Initial probabilities at every codon position Markov_oligo_logs_file 4 Markov_Initial_probability_matrix AAAA 0 0 0.381602 AAAA 0 1 0.422675 AAAA 0 2 0.323335 AAAC 1 0 0.570855 AAAC 1 1 0.108403 AAAC 1 2 -0.19797 AAAG 2 0 0.994939 AAAG 2 1 0.0163033 AAAG 2 2 0.442985 AAAT 3 0 -0.193897 AAAT 3 1 -0.205626 AAAT 3 2 0.166854 AACA 4 0 -0.00191144 AACA 4 1 0.359101 AACA 4 2 0.28577 AACC 5 0 0.0299701 AACC 5 1 0.612451 AACC 5 2 -0.389886 AACG 6 0 0.371662 AACG 6 1 0.564254 AACG 6 2 -0.0930485 AACT 7 0 -0.663693 AACT 7 1 -0.0965866 AACT 7 2 0.0072809 AAGA 8 0 0.646267 AAGA 8 1 1.34909 AAGA 8 2 0.114471 AAGC 9 0 0.570997 AAGC 9 1 0.945331 AAGC 9 2 -0.383368 AAGG 10 0 0.883935 AAGG 10 1 0.776691 AAGG 10 2 -0.214679 AAGT 11 0 -0.179672 AAGT 11 1 -0.00152585 AAGT 11 2 -0.313204 AATA 12 0 0.148022 AATA 12 1 -0.789168 AATA 12 2 -0.415251 AATC 13 0 0.247565 AATC 13 1 0.0186122 AATC 13 2 -0.36762 AATG 14 0 0.646438 AATG 14 1 -0.639115 AATG 14 2 -0.014961 AATT 15 0 -0.375234 AATT 15 1 -0.269535 AATT 15 2 -0.278696 ACAA 16 0 0.283315 ACAA 16 1 0.435822 ACAA 16 2 0.381755 ACAC 17 0 0.351802 ACAC 17 1 -0.200985 ACAC 17 2 -0.287999 ACAG 18 0 0.529141 ACAG 18 1 -0.319878 ACAG 18 2 0.0653035 ACAT 19 0 -0.250458 ACAT 19 1 -0.332856 ACAT 19 2 0.0027387 ACCA 20 0 -0.232114 ACCA 20 1 -0.133022 ACCA 20 2 0.67581 ACCC 21 0 -0.051286 ACCC 21 1 0.454649 ACCC 21 2 0.0418048 ACCG 22 0 -0.265896 ACCG 22 1 0.139571 ACCG 22 2 0.498201 ACCT 23 0 -0.874484 ACCT 23 1 -0.446031 ACCT 23 2 0.540462 ACGA 24 0 0.181305 ACGA 24 1 0.836229 ACGA 24 2 0.499757 ACGC 25 0 -0.313265 ACGC 25 1 0.417623 ACGC 25 2 0.379882 ACGG 26 0 0.403004 ACGG 26 1 0.591057 ACGG 26 2 -0.256241 ACGT 27 0 -0.667366 ACGT 27 1 -0.310692 ACGT 27 2 0.797397 ACTA 28 0 -0.177748 ACTA 28 1 -1.26036 ACTA 28 2 -0.543683 ACTC 29 0 0.216692 ACTC 29 1 -0.363662 ACTC 29 2 -0.638101 ACTG 30 0 0.523108 ACTG 30 1 -0.905257 ACTG 30 2 -0.345642 ACTT 31 0 -0.714605 ACTT 31 1 -0.49858 ACTT 31 2 -0.220948 AGAA 32 0 0.0594486 AGAA 32 1 0.624341 AGAA 32 2 1.09435 AGAC 33 0 0.155133 AGAC 33 1 0.16606 AGAC 33 2 0.621007 AGAG 34 0 0.595066 AGAG 34 1 -0.106378 AGAG 34 2 1.02502 AGAT 35 0 -0.458551 AGAT 35 1 -0.269308 AGAT 35 2 1.00538 AGCA 36 0 -0.170526 AGCA 36 1 0.00640526 AGCA 36 2 0.580077 AGCC 37 0 0.249019 AGCC 37 1 0.468882 AGCC 37 2 0.532596 AGCG 38 0 0.126749 AGCG 38 1 0.501445 AGCG 38 2 0.385609 AGCT 39 0 -0.943002 AGCT 39 1 -0.350501 AGCT 39 2 0.900579 AGGA 40 0 -0.176114 AGGA 40 1 1.0495 AGGA 40 2 0.584983 AGGC 41 0 -0.398404 AGGC 41 1 0.710258 AGGC 41 2 0.30978 AGGG 42 0 -0.3314 AGGG 42 1 0.240386 AGGG 42 2 0.120588 AGGT 43 0 -0.672358 AGGT 43 1 -0.273452 AGGT 43 2 0.577597 AGTA 44 0 -0.299603 AGTA 44 1 -0.929834 AGTA 44 2 -0.218561 AGTC 45 0 -0.140989 AGTC 45 1 0.0370864 AGTC 45 2 -0.469022 AGTG 46 0 0.392462 AGTG 46 1 -0.638095 AGTG 46 2 -0.3341 AGTT 47 0 -0.727255 AGTT 47 1 -0.443151 AGTT 47 2 -0.0448807 ATAA 48 0 -0.458352 ATAA 48 1 0.352579 ATAA 48 2 -5.81494 ATAC 49 0 -0.25033 ATAC 49 1 0.0912303 ATAC 49 2 -0.412851 ATAG 50 0 -0.140905 ATAG 50 1 0.0553062 ATAG 50 2 -5.10375 ATAT 51 0 -0.798324 ATAT 51 1 -0.0150785 ATAT 51 2 -0.314135 ATCA 52 0 -0.214129 ATCA 52 1 0.24263 ATCA 52 2 0.144649 ATCC 53 0 -0.128695 ATCC 53 1 0.693164 ATCC 53 2 -0.29575 ATCG 54 0 0.324665 ATCG 54 1 0.583681 ATCG 54 2 -0.0258166 ATCT 55 0 -1.02685 ATCT 55 1 -0.141017 ATCT 55 2 0.0116593 ATGA 56 0 0.348304 ATGA 56 1 1.06261 ATGA 56 2 -5.36872 ATGC 57 0 0.285579 ATGC 57 1 0.793752 ATGC 57 2 -0.557316 ATGG 58 0 0.872999 ATGG 58 1 1.06011 ATGG 58 2 0.175727 ATGT 59 0 -0.439253 ATGT 59 1 0.138553 ATGT 59 2 -0.514651 ATTA 60 0 -0.445213 ATTA 60 1 -0.799092 ATTA 60 2 -0.160476 ATTC 61 0 -0.00315855 ATTC 61 1 0.0955408 ATTC 61 2 -0.52511 ATTG 62 0 0.36702 ATTG 62 1 -0.761943 ATTG 62 2 -0.21319 ATTT 63 0 -0.954185 ATTT 63 1 -0.408111 ATTT 63 2 -0.63451 CAAA 64 0 0.24635 CAAA 64 1 0.520197 CAAA 64 2 0.340661 CAAC 65 0 0.412526 CAAC 65 1 0.466593 CAAC 65 2 -0.157243 CAAG 66 0 0.952991 CAAG 66 1 0.242144 CAAG 66 2 0.64164 CAAT 67 0 -0.203317 CAAT 67 1 0.141774 CAAT 67 2 0.163008 CACA 68 0 -0.41834 CACA 68 1 0.17074 CACA 68 2 -0.277565 CACC 69 0 -0.321795 CACC 69 1 0.957818 CACC 69 2 -0.275274 CACG 70 0 0.0245111 CACG 70 1 1.0169 CACG 70 2 0.0699736 CACT 71 0 -1.05297 CACT 71 1 -0.1436 CACT 71 2 -0.193432 CAGA 72 0 0.426041 CAGA 72 1 1.2871 CAGA 72 2 0.0280086 CAGC 73 0 0.110795 CAGC 73 1 0.940802 CAGC 73 2 -0.422505 CAGG 74 0 0.282023 CAGG 74 1 0.644926 CAGG 74 2 -0.544657 CAGT 75 0 -0.162106 CAGT 75 1 -0.0411547 CAGT 75 2 -0.243937 CATA 76 0 -0.162853 CATA 76 1 -0.630662 CATA 76 2 -0.630662 CATC 77 0 0.132751 CATC 77 1 0.368165 CATC 77 2 -0.433058 CATG 78 0 0.533386 CATG 78 1 -0.291183 CATG 78 2 -0.24722 CATT 79 0 -0.712926 CATT 79 1 -0.0553703 CATT 79 2 -0.460835 CCAA 80 0 0.669798 CCAA 80 1 0.283847 CCAA 80 2 0.0479412 CCAC 81 0 0.586531 CCAC 81 1 -0.0521259 CCAC 81 2 -0.552905 CCAG 82 0 1.04281 CCAG 82 1 -0.0446292 CCAG 82 2 0.230473 CCAT 83 0 0.338729 CCAT 83 1 -0.251609 CCAT 83 2 -0.286698 CCCA 84 0 0.275422 CCCA 84 1 0.0930989 CCCA 84 2 0.429573 CCCC 85 0 -0.0635558 CCCC 85 1 0.224126 CCCC 85 2 -0.0635558 CCCG 86 0 0.544067 CCCG 86 1 0.173696 CCCG 86 2 0.173696 CCCT 87 0 -0.620706 CCCT 87 1 -0.181337 CCCT 87 2 0.442817 CCGA 88 0 0.708876 CCGA 88 1 0.696603 CCGA 88 2 0.345203 CCGC 89 0 0.0105518 CCGC 89 1 0.462537 CCGC 89 2 0.400018 CCGG 90 0 1.06298 CCGG 90 1 0.481956 CCGG 90 2 -0.0188203 CCGT 91 0 0.0482352 CCGT 91 1 -0.189434 CCGT 91 2 0.301683 CCTA 92 0 0.425545 CCTA 92 1 -0.787478 CCTA 92 2 -0.444531 CCTC 93 0 0.732008 CCTC 93 1 -0.498874 CCTC 93 2 -0.188717 CCTG 94 0 1.20826 CCTG 94 1 -0.767801 CCTG 94 2 -0.436442 CCTT 95 0 -0.114422 CCTT 95 1 -0.486473 CCTT 95 2 -0.164186 CGAA 96 0 0.411726 CGAA 96 1 0.738122 CGAA 96 2 0.672739 CGAC 97 0 0.465286 CGAC 97 1 0.248616 CGAC 97 2 0.280365 CGAG 98 0 0.870206 CGAG 98 1 -0.114647 CGAG 98 2 0.670874 CGAT 99 0 0.0986182 CGAT 99 1 0.0631133 CGAT 99 2 0.87002 CGCA 100 0 0.747372 CGCA 100 1 -0.181341 CGCA 100 2 0.284751 CGCC 101 0 0.258028 CGCC 101 1 0.0348845 CGCC 101 2 0.258028 CGCG 102 0 0.849835 CGCG 102 1 -0.0209955 CGCG 102 2 -0.272309 CGCT 103 0 -0.502925 CGCT 103 1 -0.469023 CGCT 103 2 0.572431 CGGA 104 0 0.0437495 CGGA 104 1 0.748456 CGGA 104 2 0.487238 CGGC 105 0 -0.038238 CGGC 105 1 0.54955 CGGC 105 2 0.0387221 CGGG 106 0 0.279186 CGGG 106 1 0.348179 CGGG 106 2 -0.00849676 CGGT 107 0 -0.275829 CGGT 107 1 0.0450798 CGGT 107 2 0.804601 CGTA 108 0 0.518198 CGTA 108 1 -1.20584 CGTA 108 2 -0.549064 CGTC 109 0 0.833308 CGTC 109 1 -0.00913787 CGTC 109 2 -0.061321 CGTG 110 0 1.33023 CGTG 110 1 -0.795023 CGTG 110 2 -0.362158 CGTT 111 0 0.0850665 CGTT 111 1 -0.28087 CGTT 111 2 -0.191922 CTAA 112 0 -0.362047 CTAA 112 1 0.331098 CTAA 112 2 -5.2893 CTAC 113 0 -0.191809 CTAC 113 1 0.31056 CTAC 113 2 -0.794443 CTAG 114 0 0.0355336 CTAG 114 1 0.176116 CTAG 114 2 -4.62791 CTAT 115 0 -1.2669 CTAT 115 1 0.0414294 CTAT 115 2 -0.549064 CTCA 116 0 -0.439863 CTCA 116 1 0.230027 CTCA 116 2 -0.362478 CTCC 117 0 -0.174374 CTCC 117 1 0.859701 CTCC 117 2 -0.579838 CTCG 118 0 0.0592553 CTCG 118 1 0.761791 CTCG 118 2 -0.327524 CTCT 119 0 -1.0173 CTCT 119 1 0.173433 CTCT 119 2 -0.392201 CTGA 120 0 -0.138387 CTGA 120 1 1.10273 CTGA 120 2 -4.84792 CTGC 121 0 -0.151664 CTGC 121 1 1.1283 CTGC 121 2 -0.481138 CTGG 122 0 0.353339 CTGG 122 1 1.09094 CTGG 122 2 -0.552905 CTGT 123 0 -0.936621 CTGT 123 1 0.406447 CTGT 123 2 -0.600146 CTTA 124 0 -0.336364 CTTA 124 1 -0.886822 CTTA 124 2 -0.667943 CTTC 125 0 0.077659 CTTC 125 1 0.077659 CTTC 125 2 -0.546497 CTTG 126 0 0.519311 CTTG 126 1 -0.653757 CTTG 126 2 -0.457043 CTTT 127 0 -0.782111 CTTT 127 1 -0.269817 CTTT 127 2 -0.738939 GAAA 128 0 0.900468 GAAA 128 1 0.0266907 GAAA 128 2 0.665065 GAAC 129 0 1.19434 GAAC 129 1 -0.316883 GAAC 129 2 0.151103 GAAG 130 0 1.66106 GAAG 130 1 -0.234687 GAAG 130 2 0.737545 GAAT 131 0 0.521628 GAAT 131 1 -0.51387 GAAT 131 2 0.287842 GACA 132 0 0.711904 GACA 132 1 -0.018186 GACA 132 2 0.354488 GACC 133 0 0.592492 GACC 133 1 0.19859 GACC 133 2 -0.427865 GACG 134 0 1.04065 GACG 134 1 0.449289 GACG 134 2 -0.0402633 GACT 135 0 -0.0775884 GACT 135 1 -0.890691 GACT 135 2 -0.112987 GAGA 136 0 0.783742 GAGA 136 1 0.506359 GAGA 136 2 0.033072 GAGC 137 0 0.717654 GAGC 137 1 0.539976 GAGC 137 2 -0.0478143 GAGG 138 0 1.49601 GAGG 138 1 0.498201 GAGG 138 2 -0.29575 GAGT 139 0 0.394023 GAGT 139 1 -0.121444 GAGT 139 2 -0.0431892 GATA 140 0 0.869468 GATA 140 1 -1.17952 GATA 140 2 -0.437578 GATC 141 0 1.1274 GATC 141 1 -0.109363 GATC 141 2 -0.308496 GATG 142 0 1.70301 GATG 142 1 -0.722471 GATG 142 2 0.130307 GATT 143 0 0.277425 GATT 143 1 -0.433173 GATT 143 2 -0.168646 GCAA 144 0 0.470056 GCAA 144 1 0.150874 GCAA 144 2 0.0847339 GCAC 145 0 0.741381 GCAC 145 1 -0.0657112 GCAC 145 2 -0.542639 GCAG 146 0 1.21208 GCAG 146 1 0.134517 GCAG 146 2 0.000984668 GCAT 147 0 0.179058 GCAT 147 1 -0.194991 GCAT 147 2 -0.205355 GCCA 148 0 0.493255 GCCA 148 1 -0.103559 GCCA 148 2 0.57933 GCCC 149 0 0.718422 GCCC 149 1 0.332761 GCCC 149 2 -0.421012 GCCG 150 0 1.07762 GCCG 150 1 0.87282 GCCG 150 2 0.554368 GCCT 151 0 0.0193343 GCCT 151 1 -0.0367587 GCCT 151 2 0.316065 GCGA 152 0 0.696603 GCGA 152 1 0.813014 GCGA 152 2 0.309491 GCGC 153 0 0.0570721 GCGC 153 1 0.298234 GCGC 153 2 0.261866 GCGG 154 0 0.668815 GCGG 154 1 0.694128 GCGG 154 2 0.301088 GCGT 155 0 -0.312681 GCGT 155 1 -0.0790644 GCGT 155 2 0.298232 GCTA 156 0 0.814934 GCTA 156 1 -1.07646 GCTA 156 2 -0.68056 GCTC 157 0 1.09479 GCTC 157 1 -0.0282152 GCTC 157 2 -0.490838 GCTG 158 0 1.49561 GCTG 158 1 -0.858737 GCTG 158 2 -0.119781 GCTT 159 0 0.184235 GCTT 159 1 -0.593812 GCTT 159 2 -0.35809 GGAA 160 0 0.592191 GGAA 160 1 0.516205 GGAA 160 2 0.926046 GGAC 161 0 0.683657 GGAC 161 1 0.0216024 GGAC 161 2 0.499227 GGAG 162 0 1.1609 GGAG 162 1 0.0955146 GGAG 162 2 0.836516 GGAT 163 0 0.451036 GGAT 163 1 -0.234621 GGAT 163 2 1.07814 GGCA 164 0 0.518927 GGCA 164 1 -0.174217 GGCA 164 2 0.5606 GGCC 165 0 0.709633 GGCC 165 1 0.254897 GGCC 165 2 0.447267 GGCG 166 0 0.931066 GGCG 166 1 0.195956 GGCG 166 2 0.224123 GGCT 167 0 0.120943 GGCT 167 1 -0.502243 GGCT 167 2 0.890784 GGGA 168 0 0.712859 GGGA 168 1 0.772877 GGGA 168 2 0.163499 GGGC 169 0 -0.0979569 GGGC 169 1 0.238515 GGGC 169 2 0.148902 GGGG 170 0 0.476717 GGGG 170 1 -0.0828988 GGGG 170 2 -0.114647 GGGT 171 0 -0.158348 GGGT 171 1 -0.359021 GGGT 171 2 0.621811 GGTA 172 0 0.53138 GGTA 172 1 -0.978531 GGTA 172 2 -0.411423 GGTC 173 0 1.03956 GGTC 173 1 -0.0237114 GGTC 173 2 -0.311396 GGTG 174 0 1.47609 GGTG 174 1 -1.32567 GGTG 174 2 -0.262774 GGTT 175 0 0.177605 GGTT 175 1 -0.264228 GGTT 175 2 -0.0560104 GTAA 176 0 -0.405625 GTAA 176 1 -0.213825 GTAA 176 2 -5.57041 GTAC 177 0 -0.143597 GTAC 177 1 0.0734654 GTAC 177 2 -0.644373 GTAG 178 0 -0.0410846 GTAG 178 1 -0.361393 GTAG 178 2 -4.94636 GTAT 179 0 -0.677013 GTAT 179 1 -0.437462 GTAT 179 2 -0.461415 GTCA 180 0 -0.246404 GTCA 180 1 0.0620697 GTCA 180 2 0.0243291 GTCC 181 0 0.217013 GTCC 181 1 0.659865 GTCC 181 2 -0.247296 GTCG 182 0 0.333117 GTCG 182 1 0.598822 GTCG 182 2 -0.33852 GTCT 183 0 -0.782681 GTCT 183 1 -0.0721388 GTCT 183 2 0.108745 GTGA 184 0 -0.0376337 GTGA 184 1 0.970383 GTGA 184 2 -4.88182 GTGC 185 0 -0.357466 GTGC 185 1 0.923465 GTGC 185 2 -0.63777 GTGG 186 0 0.101304 GTGG 186 1 0.985262 GTGG 186 2 -0.217147 GTGT 187 0 -0.796754 GTGT 187 1 -0.0118017 GTGT 187 2 -0.653656 GTTA 188 0 0.0592195 GTTA 188 1 -1.00033 GTTA 188 2 -0.409987 GTTC 189 0 0.190031 GTTC 189 1 0.080166 GTTC 189 2 -0.485925 GTTG 190 0 0.702448 GTTG 190 1 -0.701757 GTTG 190 2 -0.230249 GTTT 191 0 -0.722637 GTTT 191 1 -0.457301 GTTT 191 2 -0.63793 TAAA 192 0 -5.93497 TAAA 192 1 -0.14807 TAAA 192 2 0.269592 TAAC 193 0 -5.29132 TAAC 193 1 -0.260878 TAAC 193 2 -0.161417 TAAG 194 0 -5.28324 TAAG 194 1 -0.688115 TAAG 194 2 -0.0574888 TAAT 195 0 -6.02585 TAAT 195 1 -0.520517 TAAT 195 2 0.0309382 TACA 196 0 -0.388134 TACA 196 1 -0.209196 TACA 196 2 0.205641 TACC 197 0 -0.586803 TACC 197 1 0.272734 TACC 197 2 -0.39875 TACG 198 0 0.0366099 TACG 198 1 0.165441 TACG 198 2 -0.267884 TACT 199 0 -1.07818 TACT 199 1 -0.636349 TACT 199 2 -0.0289166 TAGA 200 0 -5.03337 TAGA 200 1 0.511808 TAGA 200 2 -0.0029306 TAGC 201 0 -4.6995 TAGC 201 1 0.227758 TAGC 201 2 -0.156203 TAGG 202 0 -4.56753 TAGG 202 1 -0.0566654 TAGG 202 2 -0.542174 TAGT 203 0 -5.62087 TAGT 203 1 -0.596987 TAGT 203 2 -0.191521 TATA 204 0 -0.332055 TATA 204 1 -1.45907 TATA 204 2 -0.473619 TATC 205 0 -0.199589 TATC 205 1 -0.2333 TATC 205 2 -0.17773 TATG 206 0 0.0204771 TATG 206 1 -0.993058 TATG 206 2 -0.0229218 TATT 207 0 -0.879 TATT 207 1 -0.743774 TATT 207 2 -0.305901 TCAA 208 0 0.193903 TCAA 208 1 0.103274 TCAA 208 2 0.427818 TCAC 209 0 0.0144064 TCAC 209 1 -0.287518 TCAC 209 2 -0.760805 TCAG 210 0 0.320178 TCAG 210 1 -0.444796 TCAG 210 2 0.159405 TCAT 211 0 -0.393255 TCAT 211 1 -0.822934 TCAT 211 2 -0.0936829 TCCA 212 0 -0.221407 TCCA 212 1 -0.193496 TCCA 212 2 0.668113 TCCC 213 0 -0.31791 TCCC 213 1 0.258974 TCCC 213 2 0.217013 TCCG 214 0 0.277235 TCCG 214 1 0.168035 TCCG 214 2 0.598821 TCCT 215 0 -0.860783 TCCT 215 1 -0.358157 TCCT 215 2 0.689811 TCGA 216 0 0.0209617 TCGA 216 1 0.472946 TCGA 216 2 0.437357 TCGC 217 0 -0.371564 TCGC 217 1 0.262744 TCGC 217 2 0.363547 TCGG 218 0 -0.0164138 TCGG 218 1 0.334987 TCGG 218 2 -0.0341104 TCGT 219 0 -0.752383 TCGT 219 1 -0.393986 TCGT 219 2 0.785595 TCTA 220 0 -0.0334868 TCTA 220 1 -1.77443 TCTA 220 2 -0.33549 TCTC 221 0 -0.0431874 TCTC 221 1 -0.573011 TCTC 221 2 -0.363661 TCTG 222 0 0.570692 TCTG 222 1 -0.993749 TCTG 222 2 -0.169573 TCTT 223 0 -0.631186 TCTT 223 1 -0.859625 TCTT 223 2 -0.0224942 TGAA 224 0 -5.45946 TGAA 224 1 0.305737 TGAA 224 2 1.11003 TGAC 225 0 -4.88182 TGAC 225 1 -0.145622 TGAC 225 2 0.502675 TGAG 226 0 -4.6922 TGAG 226 1 -0.067226 TGAG 226 2 0.737148 TGAT 227 0 -5.5395 TGAT 227 1 -0.206778 TGAT 227 2 0.957278 TGCA 228 0 -0.615624 TGCA 228 1 -0.184186 TGCA 228 2 0.70613 TGCC 229 0 -0.419192 TGCC 229 1 0.451638 TGCC 229 2 0.572005 TGCG 230 0 -0.00326453 TGCG 230 1 0.289718 TGCG 230 2 0.437044 TGCT 231 0 -0.983474 TGCT 231 1 -0.375689 TGCT 231 2 0.938778 TGGA 232 0 0.0938603 TGGA 232 1 0.894106 TGGA 232 2 0.983719 TGGC 233 0 0.00388356 TGGC 233 1 0.739591 TGGC 233 2 0.857375 TGGG 234 0 0.427358 TGGG 234 1 0.472309 TGGG 234 2 0.70638 TGGT 235 0 -0.694631 TGGT 235 1 -0.237049 TGGT 235 2 0.924637 TGTA 236 0 -0.918329 TGTA 236 1 -1.328 TGTA 236 2 -0.160117 TGTC 237 0 -0.30858 TGTC 237 1 -0.101496 TGTC 237 2 0.0454355 TGTG 238 0 -0.0354695 TGTG 238 1 -0.904968 TGTG 238 2 -0.19062 TGTT 239 0 -1.03085 TGTT 239 1 -0.602395 TGTT 239 2 0.193835 TTAA 240 0 -0.28503 TTAA 240 1 -0.226571 TTAA 240 2 -5.98547 TTAC 241 0 -0.189207 TTAC 241 1 -0.35368 TTAC 241 2 -0.564332 TTAG 242 0 0.103274 TTAG 242 1 -0.488472 TTAG 242 2 -5.43012 TTAT 243 0 -0.738723 TTAT 243 1 -0.57429 TTAT 243 2 -0.372308 TTCA 244 0 -0.487979 TTCA 244 1 -0.296924 TTCA 244 2 -0.0281944 TTCC 245 0 -0.215347 TTCC 245 1 0.357657 TTCC 245 2 -0.263664 TTCG 246 0 -0.0756499 TTCG 246 1 0.308948 TTCG 246 2 -0.459235 TTCT 247 0 -1.10711 TTCT 247 1 -0.455633 TTCT 247 2 -0.0572863 TTGA 248 0 -0.248998 TTGA 248 1 0.62647 TTGA 248 2 -5.54732 TTGC 249 0 -0.243681 TTGC 249 1 0.404615 TTGC 249 2 -0.675813 TTGG 250 0 0.286902 TTGG 250 1 0.590332 TTGG 250 2 -0.110659 TTGT 251 0 -0.813734 TTGT 251 1 -0.337651 TTGT 251 2 -0.715104 TTTA 252 0 -0.794897 TTTA 252 1 -1.44003 TTTA 252 2 -0.338819 TTTC 253 0 -0.4968 TTTC 253 1 -0.530217 TTTC 253 2 -0.535083 TTTG 254 0 -0.21647 TTTG 254 1 -1.15551 TTTG 254 2 -0.385727 TTTT 255 0 -1.30833 TTTT 255 1 -0.915027 TTTT 255 2 -0.890847 # Transition probabilities at every codon position Markov_Transition_probability_matrix AAAAA 0 0 0.408102 AAAAA 0 1 0.0161872 AAAAA 0 2 0.00452342 AAAAC 1 0 0.101747 AAAAC 1 1 -0.414071 AAAAC 1 2 0.180793 AAAAG 2 0 -0.287835 AAAAG 2 1 0.273768 AAAAG 2 2 0.542648 AAAAT 3 0 -0.334153 AAAAT 3 1 0.0119356 AAAAT 3 2 -0.511772 AAACA 4 0 -0.100132 AAACA 4 1 0.199671 AAACA 4 2 0.086192 AAACC 5 0 0.360368 AAACC 5 1 -0.722254 AAACC 5 2 0.189074 AAACG 6 0 0.350795 AAACG 6 1 0.239338 AAACG 6 2 0.48169 AAACT 7 0 -0.331415 AAACT 7 1 -0.0555503 AAACT 7 2 -0.562854 AAAGA 8 0 0.564459 AAAGA 8 1 0.192399 AAAGA 8 2 0.369495 AAAGC 9 0 0.221967 AAAGC 9 1 -0.267321 AAAGC 9 2 0.199346 AAAGG 10 0 0.0128091 AAAGG 10 1 0.153334 AAAGG 10 2 0.2965 AAAGT 11 0 -0.751449 AAAGT 11 1 -0.0779988 AAAGT 11 2 -0.631332 AAATA 12 0 -0.342224 AAATA 12 1 -0.211663 AAATA 12 2 -0.0241256 AAATC 13 0 0.548217 AAATC 13 1 -0.0509598 AAATC 13 2 0.123104 AAATG 14 0 -0.231952 AAATG 14 1 0.189927 AAATG 14 2 0.496475 AAATT 15 0 0.0504609 AAATT 15 1 0.0881112 AAATT 15 2 -0.5799 AACAA 16 0 0.422642 AACAA 16 1 0.248423 AACAA 16 2 0.0744896 AACAC 17 0 -0.258704 AACAC 17 1 -0.439049 AACAC 17 2 0.0802394 AACAG 18 0 -0.329912 AACAG 18 1 -0.211349 AACAG 18 2 0.28666 AACAT 19 0 -0.281798 AACAT 19 1 0.00712556 AACAT 19 2 -0.38799 AACCA 20 0 -0.0329017 AACCA 20 1 0.10038 AACCA 20 2 0.276495 AACCC 21 0 0.181252 AACCC 21 1 -0.350582 AACCC 21 2 0.300355 AACCG 22 0 0.131242 AACCG 22 1 0.000746065 AACCG 22 2 -0.425416 AACCT 23 0 -0.14105 AACCT 23 1 0.0171406 AACCT 23 2 -0.478293 AACGA 24 0 0.473638 AACGA 24 1 0.0591462 AACGA 24 2 0.32639 AACGC 25 0 -0.231618 AACGC 25 1 -0.496969 AACGC 25 2 -0.00329527 AACGG 26 0 0.300044 AACGG 26 1 -0.753689 AACGG 26 2 0.300915 AACGT 27 0 -0.635418 AACGT 27 1 0.27745 AACGT 27 2 -0.511314 AACTA 28 0 -0.748934 AACTA 28 1 -0.27007 AACTA 28 2 -0.160575 AACTC 29 0 0.637522 AACTC 29 1 -0.00581009 AACTC 29 2 0.4737 AACTG 30 0 -0.173049 AACTG 30 1 -0.00470824 AACTG 30 2 0.569668 AACTT 31 0 0.199658 AACTT 31 1 0.18432 AACTT 31 2 -0.770675 AAGAA 32 0 0.551408 AAGAA 32 1 0.12907 AAGAA 32 2 0.0593027 AAGAC 33 0 -0.198995 AAGAC 33 1 -0.269087 AAGAC 33 2 0.083452 AAGAG 34 0 -0.480249 AAGAG 34 1 -0.199043 AAGAG 34 2 0.465524 AAGAT 35 0 -0.615957 AAGAT 35 1 0.0861201 AAGAT 35 2 -0.622329 AAGCA 36 0 0.133631 AAGCA 36 1 -0.105667 AAGCA 36 2 0.0591773 AAGCC 37 0 0.283217 AAGCC 37 1 -0.0677219 AAGCC 37 2 0.218555 AAGCG 38 0 0.229417 AAGCG 38 1 -0.408111 AAGCG 38 2 0.498861 AAGCT 39 0 -0.483582 AAGCT 39 1 0.219236 AAGCT 39 2 -0.542413 AAGGA 40 0 0.538713 AAGGA 40 1 0.376685 AAGGA 40 2 0.260818 AAGGC 41 0 -0.0837201 AAGGC 41 1 -0.564261 AAGGC 41 2 -0.208884 AAGGG 42 0 -0.330057 AAGGG 42 1 -0.0963258 AAGGG 42 2 0.0865833 AAGGT 43 0 -0.398689 AAGGT 43 1 0.0070501 AAGGT 43 2 -0.147374 AAGTA 44 0 -0.504712 AAGTA 44 1 -0.126569 AAGTA 44 2 0.11134 AAGTC 45 0 0.802066 AAGTC 45 1 -0.171785 AAGTC 45 2 0.0389707 AAGTG 46 0 -0.161177 AAGTG 46 1 0.0120757 AAGTG 46 2 0.515727 AAGTT 47 0 -0.158552 AAGTT 47 1 0.131866 AAGTT 47 2 -0.585596 AATAA 48 0 0.278771 AATAA 48 1 -5.37021 AATAA 48 2 0.0273124 AATAC 49 0 -0.0583983 AATAC 49 1 0.571461 AATAC 49 2 0.0372049 AATAG 50 0 -0.146064 AATAG 50 1 -4.53188 AATAG 50 2 0.492359 AATAT 51 0 -0.2481 AATAT 51 1 0.680296 AATAT 51 2 -0.358473 AATCA 52 0 0.10676 AATCA 52 1 0.23754 AATCA 52 2 0.202425 AATCC 53 0 0.203544 AATCC 53 1 -0.478068 AATCC 53 2 -0.171084 AATCG 54 0 0.293568 AATCG 54 1 -0.056062 AATCG 54 2 0.7322 AATCT 55 0 -0.472488 AATCT 55 1 -0.0139584 AATCT 55 2 -0.748558 AATGA 56 0 0.228276 AATGA 56 1 -5.05565 AATGA 56 2 0.152076 AATGC 57 0 0.122542 AATGC 57 1 0.10384 AATGC 57 2 0.109211 AATGG 58 0 0.346057 AATGG 58 1 0.986561 AATGG 58 2 0.681364 AATGT 59 0 -0.517845 AATGT 59 1 0.170093 AATGT 59 2 -0.740263 AATTA 60 0 -0.486069 AATTA 60 1 0.081533 AATTA 60 2 -0.309219 AATTC 61 0 0.487954 AATTC 61 1 0.122243 AATTC 61 2 0.262201 AATTG 62 0 -0.0692531 AATTG 62 1 0.236558 AATTG 62 2 0.870301 AATTT 63 0 0.0856951 AATTT 63 1 -0.256932 AATTT 63 2 -0.587336 ACAAA 64 0 -0.056504 ACAAA 64 1 0.0200127 ACAAA 64 2 -0.268383 ACAAC 65 0 0.268889 ACAAC 65 1 -0.588322 ACAAC 65 2 0.2861 ACAAG 66 0 -0.186701 ACAAG 66 1 0.115683 ACAAG 66 2 0.593655 ACAAT 67 0 -0.0486037 ACAAT 67 1 0.189031 ACAAT 67 2 -0.383437 ACACA 68 0 -0.371877 ACACA 68 1 0.122502 ACACA 68 2 0.114956 ACACC 69 0 0.571406 ACACC 69 1 -1.17249 ACACC 69 2 0.124359 ACACG 70 0 0.795733 ACACG 70 1 0.20643 ACACG 70 2 0.200349 ACACT 71 0 -0.505186 ACACT 71 1 0.106014 ACACT 71 2 -0.267099 ACAGA 72 0 0.701063 ACAGA 72 1 0.456994 ACAGA 72 2 0.252756 ACAGC 73 0 0.180498 ACAGC 73 1 -0.293725 ACAGC 73 2 0.0470344 ACAGG 74 0 -0.156962 ACAGG 74 1 -0.0289981 ACAGG 74 2 0.269487 ACAGT 75 0 -0.873973 ACAGT 75 1 -0.217547 ACAGT 75 2 -0.353381 ACATA 76 0 -0.572579 ACATA 76 1 -0.421779 ACATA 76 2 -0.085107 ACATC 77 0 0.376521 ACATC 77 1 0.148766 ACATC 77 2 0.378673 ACATG 78 0 0.27316 ACATG 78 1 0.479751 ACATG 78 2 0.757562 ACATT 79 0 0.021717 ACATT 79 1 -0.0197529 ACATT 79 2 -0.622485 ACCAA 80 0 0.0480209 ACCAA 80 1 0.129873 ACCAA 80 2 0.0107337 ACCAC 81 0 0.339517 ACCAC 81 1 -0.443244 ACCAC 81 2 -0.00201004 ACCAG 82 0 -0.0458527 ACCAG 82 1 0.23607 ACCAG 82 2 0.345504 ACCAT 83 0 -0.312622 ACCAT 83 1 -0.0720372 ACCAT 83 2 -0.293079 ACCCA 84 0 -0.137435 ACCCA 84 1 0.203927 ACCCA 84 2 0.196919 ACCCC 85 0 0.917265 ACCCC 85 1 -0.020807 ACCCC 85 2 0.148419 ACCCG 86 0 0.176971 ACCCG 86 1 -0.0853437 ACCCG 86 2 0.686877 ACCCT 87 0 -0.682425 ACCCT 87 1 -0.15227 ACCCT 87 2 -0.90473 ACCGA 88 0 0.194177 ACCGA 88 1 -0.351869 ACCGA 88 2 0.147519 ACCGC 89 0 0.525113 ACCGC 89 1 0.363274 ACCGC 89 2 -0.238984 ACCGG 90 0 -0.0779605 ACCGG 90 1 0.396931 ACCGG 90 2 0.719175 ACCGT 91 0 -0.549401 ACCGT 91 1 -0.0317018 ACCGT 91 2 -0.637746 ACCTA 92 0 -0.262991 ACCTA 92 1 -0.230631 ACCTA 92 2 -0.215363 ACCTC 93 0 0.0953055 ACCTC 93 1 0.14064 ACCTC 93 2 -0.283549 ACCTG 94 0 -0.0773871 ACCTG 94 1 -0.376632 ACCTG 94 2 0.764383 ACCTT 95 0 0.185226 ACCTT 95 1 0.250051 ACCTT 95 2 -0.382427 ACGAA 96 0 0.337423 ACGAA 96 1 -0.0738794 ACGAA 96 2 -0.266417 ACGAC 97 0 -0.0473329 ACGAC 97 1 -0.139951 ACGAC 97 2 0.31788 ACGAG 98 0 -0.449659 ACGAG 98 1 0.0140281 ACGAG 98 2 0.310093 ACGAT 99 0 -0.204741 ACGAT 99 1 0.119756 ACGAT 99 2 -0.152018 ACGCA 100 0 -0.222448 ACGCA 100 1 -0.0865253 ACGCA 100 2 0.159762 ACGCC 101 0 0.503492 ACGCC 101 1 0.118883 ACGCC 101 2 -0.189655 ACGCG 102 0 -0.22986 ACGCG 102 1 -0.692484 ACGCG 102 2 0.482336 ACGCT 103 0 -0.0265428 ACGCT 103 1 0.234697 ACGCT 103 2 -0.502628 ACGGA 104 0 0.147335 ACGGA 104 1 0.111959 ACGGA 104 2 -0.157213 ACGGC 105 0 -0.0488268 ACGGC 105 1 -0.453944 ACGGC 105 2 -0.538206 ACGGG 106 0 -0.0696828 ACGGG 106 1 -0.580508 ACGGG 106 2 0.589564 ACGGT 107 0 -0.131629 ACGGT 107 1 0.23332 ACGGT 107 2 0.0668039 ACGTA 108 0 -0.553641 ACGTA 108 1 -0.0123711 ACGTA 108 2 -0.294558 ACGTC 109 0 0.305982 ACGTC 109 1 0.100536 ACGTC 109 2 0.0307973 ACGTG 110 0 -0.900264 ACGTG 110 1 0.148405 ACGTG 110 2 0.736448 ACGTT 111 0 0.359121 ACGTT 111 1 -0.124038 ACGTT 111 2 -0.359474 ACTAA 112 0 0.116237 ACTAA 112 1 -4.30241 ACTAA 112 2 0.201268 ACTAC 113 0 0.24695 ACTAC 113 1 0.453013 ACTAC 113 2 0.0464868 ACTAG 114 0 -0.376632 ACTAG 114 1 -3.90914 ACTAG 114 2 0.264529 ACTAT 115 0 -0.094767 ACTAT 115 1 0.779846 ACTAT 115 2 -0.557522 ACTCA 116 0 -0.237943 ACTCA 116 1 0.00829798 ACTCA 116 2 -0.0244182 ACTCC 117 0 0.563868 ACTCC 117 1 -0.0202067 ACTCC 117 2 0.332703 ACTCG 118 0 0.279372 ACTCG 118 1 0.0975793 ACTCG 118 2 0.450489 ACTCT 119 0 -0.375554 ACTCT 119 1 -0.0547161 ACTCT 119 2 -0.67822 ACTGA 120 0 0.140834 ACTGA 120 1 -4.38404 ACTGA 120 2 0.00509985 ACTGC 121 0 0.220012 ACTGC 121 1 0.436238 ACTGC 121 2 0.298348 ACTGG 122 0 0.179506 ACTGG 122 1 0.357453 ACTGG 122 2 0.482754 ACTGT 123 0 -0.389135 ACTGT 123 1 0.349851 ACTGT 123 2 -0.567516 ACTTA 124 0 -0.315343 ACTTA 124 1 0.06049 ACTTA 124 2 -0.197044 ACTTC 125 0 0.457234 ACTTC 125 1 -0.0837735 ACTTC 125 2 0.226382 ACTTG 126 0 -0.332494 ACTTG 126 1 0.221322 ACTTG 126 2 0.606173 ACTTT 127 0 0.0196295 ACTTT 127 1 -0.123967 ACTTT 127 2 -0.492989 AGAAA 128 0 0.120677 AGAAA 128 1 0.113915 AGAAA 128 2 -0.22976 AGAAC 129 0 -0.264657 AGAAC 129 1 -0.203838 AGAAC 129 2 0.146518 AGAAG 130 0 0.415035 AGAAG 130 1 0.347454 AGAAG 130 2 0.832962 AGAAT 131 0 -0.3672 AGAAT 131 1 -0.316335 AGAAT 131 2 -0.579416 AGACA 132 0 -0.204298 AGACA 132 1 0.260709 AGACA 132 2 0.0182001 AGACC 133 0 0.497184 AGACC 133 1 -0.391466 AGACC 133 2 0.0752758 AGACG 134 0 0.772951 AGACG 134 1 -0.0570083 AGACG 134 2 0.751209 AGACT 135 0 -0.584416 AGACT 135 1 -0.143359 AGACT 135 2 -0.503746 AGAGA 136 0 0.396736 AGAGA 136 1 0.432285 AGAGA 136 2 0.129574 AGAGC 137 0 0.0827221 AGAGC 137 1 -0.613962 AGAGC 137 2 -0.257287 AGAGG 138 0 0.0345197 AGAGG 138 1 -0.699115 AGAGG 138 2 0.418663 AGAGT 139 0 -0.47984 AGAGT 139 1 0.109339 AGAGT 139 2 -0.333879 AGATA 140 0 -0.430323 AGATA 140 1 0.150273 AGATA 140 2 -0.0576264 AGATC 141 0 0.650928 AGATC 141 1 0.371737 AGATC 141 2 0.27841 AGATG 142 0 -0.0530298 AGATG 142 1 0.177579 AGATG 142 2 0.693063 AGATT 143 0 -0.0234579 AGATT 143 1 -0.414824 AGATT 143 2 -0.746389 AGCAA 144 0 0.259399 AGCAA 144 1 0.235634 AGCAA 144 2 -0.0169015 AGCAC 145 0 -0.382576 AGCAC 145 1 -0.888988 AGCAC 145 2 0.0441246 AGCAG 146 0 0.174415 AGCAG 146 1 0.378495 AGCAG 146 2 0.605804 AGCAT 147 0 -0.160712 AGCAT 147 1 -0.0624112 AGCAT 147 2 -0.549702 AGCCA 148 0 0.0870205 AGCCA 148 1 0.151898 AGCCA 148 2 0.156584 AGCCC 149 0 0.222938 AGCCC 149 1 0.00307439 AGCCC 149 2 0.569594 AGCCG 150 0 0.827877 AGCCG 150 1 0.467435 AGCCG 150 2 0.87608 AGCCT 151 0 -0.626236 AGCCT 151 1 -0.314437 AGCCT 151 2 -1.23929 AGCGA 152 0 0.634768 AGCGA 152 1 0.214088 AGCGA 152 2 0.578617 AGCGC 153 0 0.192685 AGCGC 153 1 -0.45964 AGCGC 153 2 -0.195388 AGCGG 154 0 -0.19031 AGCGG 154 1 0.104046 AGCGG 154 2 0.219882 AGCGT 155 0 -0.836936 AGCGT 155 1 -0.0541771 AGCGT 155 2 -0.700486 AGCTA 156 0 -1.02479 AGCTA 156 1 -0.267365 AGCTA 156 2 -0.219161 AGCTC 157 0 0.800672 AGCTC 157 1 0.208169 AGCTC 157 2 -0.0723814 AGCTG 158 0 -0.18407 AGCTG 158 1 0.510094 AGCTG 158 2 0.7892 AGCTT 159 0 0.135658 AGCTT 159 1 -0.268052 AGCTT 159 2 -0.550473 AGGAA 160 0 0.619744 AGGAA 160 1 0.27021 AGGAA 160 2 0.020071 AGGAC 161 0 -0.292903 AGGAC 161 1 -0.270686 AGGAC 161 2 0.270053 AGGAG 162 0 -0.265508 AGGAG 162 1 -0.211687 AGGAG 162 2 0.339213 AGGAT 163 0 -0.585294 AGGAT 163 1 -0.0478547 AGGAT 163 2 -0.426332 AGGCA 164 0 -0.595142 AGGCA 164 1 -0.41714 AGGCA 164 2 -0.181985 AGGCC 165 0 0.592679 AGGCC 165 1 -0.515983 AGGCC 165 2 -0.00109313 AGGCG 166 0 0.870368 AGGCG 166 1 0.159007 AGGCG 166 2 0.418902 AGGCT 167 0 -0.416893 AGGCT 167 1 0.410454 AGGCT 167 2 -0.00373597 AGGGA 168 0 0.444984 AGGGA 168 1 -0.236501 AGGGA 168 2 0.340542 AGGGC 169 0 0.19088 AGGGC 169 1 -0.103268 AGGGC 169 2 -0.112684 AGGGG 170 0 -0.562502 AGGGG 170 1 -0.356584 AGGGG 170 2 -0.0410439 AGGGT 171 0 -0.648446 AGGGT 171 1 0.426593 AGGGT 171 2 -0.534035 AGGTA 172 0 -0.663469 AGGTA 172 1 -0.386622 AGGTA 172 2 -0.224476 AGGTC 173 0 0.590114 AGGTC 173 1 -0.168164 AGGTC 173 2 0.229678 AGGTG 174 0 -0.536328 AGGTG 174 1 0.194632 AGGTG 174 2 0.807548 AGGTT 175 0 0.203341 AGGTT 175 1 0.166047 AGGTT 175 2 -0.685002 AGTAA 176 0 0.0209371 AGTAA 176 1 -4.76493 AGTAA 176 2 0.0250518 AGTAC 177 0 0.0889933 AGTAC 177 1 0.447911 AGTAC 177 2 0.252645 AGTAG 178 0 0.222347 AGTAG 178 1 -4.12415 AGTAG 178 2 0.270516 AGTAT 179 0 -0.255277 AGTAT 179 1 0.915673 AGTAT 179 2 -0.45324 AGTCA 180 0 -0.119929 AGTCA 180 1 -0.00578656 AGTCA 180 2 -0.0695271 AGTCC 181 0 0.375063 AGTCC 181 1 -0.526313 AGTCC 181 2 -0.198454 AGTCG 182 0 0.356604 AGTCG 182 1 -0.47277 AGTCG 182 2 0.537586 AGTCT 183 0 -0.414109 AGTCT 183 1 0.37022 AGTCT 183 2 -0.284251 AGTGA 184 0 0.230993 AGTGA 184 1 -4.52227 AGTGA 184 2 0.177677 AGTGC 185 0 0.554844 AGTGC 185 1 0.169072 AGTGC 185 2 -0.13492 AGTGG 186 0 0.215738 AGTGG 186 1 0.679903 AGTGG 186 2 0.337068 AGTGT 187 0 -0.698621 AGTGT 187 1 0.23489 AGTGT 187 2 -0.329562 AGTTA 188 0 -0.497434 AGTTA 188 1 0.0281996 AGTTA 188 2 -0.211148 AGTTC 189 0 0.500008 AGTTC 189 1 -0.0258679 AGTTC 189 2 0.22979 AGTTG 190 0 -0.344528 AGTTG 190 1 0.218664 AGTTG 190 2 0.649384 AGTTT 191 0 0.157951 AGTTT 191 1 -0.16049 AGTTT 191 2 -0.669474 ATAAA 192 0 0.265461 ATAAA 192 1 0.0267076 ATAAA 192 2 -0.29953 ATAAC 193 0 0.108994 ATAAC 193 1 0.128023 ATAAC 193 2 0.575229 ATAAG 194 0 -0.247581 ATAAG 194 1 -0.035276 ATAAG 194 2 0.493883 ATAAT 195 0 -0.262444 ATAAT 195 1 -0.0644175 ATAAT 195 2 -0.390655 ATACA 196 0 -0.0859301 ATACA 196 1 0.195697 ATACA 196 2 0.139438 ATACC 197 0 0.824494 ATACC 197 1 -0.489298 ATACC 197 2 -0.305381 ATACG 198 0 0.103393 ATACG 198 1 0.102435 ATACG 198 2 0.564406 ATACT 199 0 -0.627099 ATACT 199 1 -0.0865769 ATACT 199 2 -0.301619 ATAGA 200 0 0.432777 ATAGA 200 1 0.236566 ATAGA 200 2 -0.0381009 ATAGC 201 0 0.177216 ATAGC 201 1 -0.199662 ATAGC 201 2 0.344272 ATAGG 202 0 0.186148 ATAGG 202 1 -0.350665 ATAGG 202 2 0.574284 ATAGT 203 0 -0.658859 ATAGT 203 1 0.0103504 ATAGT 203 2 -0.524326 ATATA 204 0 -0.573564 ATATA 204 1 -0.1557 ATATA 204 2 0.0721144 ATATC 205 0 0.424615 ATATC 205 1 0.0999451 ATATC 205 2 0.285523 ATATG 206 0 0.0485421 ATATG 206 1 0.177438 ATATG 206 2 0.32096 ATATT 207 0 0.0628987 ATATT 207 1 -0.0431189 ATATT 207 2 -0.479067 ATCAA 208 0 0.572936 ATCAA 208 1 0.457998 ATCAA 208 2 0.100722 ATCAC 209 0 -0.197263 ATCAC 209 1 -0.907627 ATCAC 209 2 -0.0613477 ATCAG 210 0 -0.234053 ATCAG 210 1 0.0768106 ATCAG 210 2 0.230618 ATCAT 211 0 -0.51024 ATCAT 211 1 -0.162147 ATCAT 211 2 -0.178904 ATCCA 212 0 -0.136983 ATCCA 212 1 -0.0409546 ATCCA 212 2 -0.00245335 ATCCC 213 0 0.216484 ATCCC 213 1 -0.561409 ATCCC 213 2 -0.298433 ATCCG 214 0 0.236988 ATCCG 214 1 0.0260436 ATCCG 214 2 0.755442 ATCCT 215 0 -0.111788 ATCCT 215 1 0.292652 ATCCT 215 2 -0.366462 ATCGA 216 0 0.353714 ATCGA 216 1 -0.384873 ATCGA 216 2 0.32226 ATCGC 217 0 0.293748 ATCGC 217 1 -0.0594527 ATCGC 217 2 0.266472 ATCGG 218 0 -0.0887043 ATCGG 218 1 -0.347724 ATCGG 218 2 -0.00648882 ATCGT 219 0 -0.54971 ATCGT 219 1 0.362767 ATCGT 219 2 -0.539833 ATCTA 220 0 -0.36825 ATCTA 220 1 -0.0226212 ATCTA 220 2 0.120723 ATCTC 221 0 0.415513 ATCTC 221 1 -0.0531585 ATCTC 221 2 0.132849 ATCTG 222 0 0.286512 ATCTG 222 1 0.00563497 ATCTG 222 2 0.624509 ATCTT 223 0 -0.195336 ATCTT 223 1 0.0378536 ATCTT 223 2 -0.888572 ATGAA 224 0 0.16286 ATGAA 224 1 0.125127 ATGAA 224 2 -0.368154 ATGAC 225 0 -0.0753857 ATGAC 225 1 -0.407418 ATGAC 225 2 0.399893 ATGAG 226 0 0.191521 ATGAG 226 1 -0.0548518 ATGAG 226 2 0.710049 ATGAT 227 0 -0.252376 ATGAT 227 1 0.0407679 ATGAT 227 2 -0.331405 ATGCA 228 0 -0.238235 ATGCA 228 1 -0.0671684 ATGCA 228 2 -0.250033 ATGCC 229 0 0.711736 ATGCC 229 1 -0.0980213 ATGCC 229 2 0.467783 ATGCG 230 0 0.418912 ATGCG 230 1 -0.320167 ATGCG 230 2 0.657385 ATGCT 231 0 -0.371183 ATGCT 231 1 0.162471 ATGCT 231 2 -0.294079 ATGGA 232 0 0.280488 ATGGA 232 1 0.144019 ATGGA 232 2 0.08076 ATGGC 233 0 0.374316 ATGGC 233 1 0.149644 ATGGC 233 2 0.453866 ATGGG 234 0 -0.0492538 ATGGG 234 1 -0.438489 ATGGG 234 2 0.344969 ATGGT 235 0 -0.536836 ATGGT 235 1 -0.0331064 ATGGT 235 2 -0.644752 ATGTA 236 0 -0.684074 ATGTA 236 1 -0.107696 ATGTA 236 2 -0.132738 ATGTC 237 0 0.904187 ATGTC 237 1 -0.00234234 ATGTC 237 2 0.258821 ATGTG 238 0 -0.52305 ATGTG 238 1 -0.0316539 ATGTG 238 2 0.641252 ATGTT 239 0 -0.00849053 ATGTT 239 1 0.0837786 ATGTT 239 2 -0.479637 ATTAA 240 0 0.159058 ATTAA 240 1 -5.38696 ATTAA 240 2 -0.0517657 ATTAC 241 0 0.124183 ATTAC 241 1 0.499004 ATTAC 241 2 0.221716 ATTAG 242 0 -0.289989 ATTAG 242 1 -4.88487 ATTAG 242 2 0.440096 ATTAT 243 0 -0.0835326 ATTAT 243 1 0.742272 ATTAT 243 2 -0.458359 ATTCA 244 0 -0.051346 ATTCA 244 1 0.130857 ATTCA 244 2 0.130524 ATTCC 245 0 0.479226 ATTCC 245 1 0.0282102 ATTCC 245 2 0.571404 ATTCG 246 0 0.442994 ATTCG 246 1 -0.42641 ATTCG 246 2 0.236351 ATTCT 247 0 -0.533197 ATTCT 247 1 -0.0244025 ATTCT 247 2 -0.825915 ATTGA 248 0 0.405797 ATTGA 248 1 -4.92201 ATTGA 248 2 0.0466842 ATTGC 249 0 0.154059 ATTGC 249 1 0.324342 ATTGC 249 2 0.0291894 ATTGG 250 0 0.215271 ATTGG 250 1 0.831092 ATTGG 250 2 0.452057 ATTGT 251 0 -0.712694 ATTGT 251 1 0.059102 ATTGT 251 2 -0.311402 ATTTA 252 0 -0.197566 ATTTA 252 1 0.272193 ATTTA 252 2 -0.0862 ATTTC 253 0 0.381551 ATTTC 253 1 0.173202 ATTTC 253 2 0.374358 ATTTG 254 0 -0.211852 ATTTG 254 1 0.0347525 ATTTG 254 2 0.540903 ATTTT 255 0 -0.000120321 ATTTT 255 1 -0.384111 ATTTT 255 2 -0.666882 CAAAA 256 0 0.226867 CAAAA 256 1 0.0784427 CAAAA 256 2 -0.190642 CAAAC 257 0 0.0132236 CAAAC 257 1 -0.55999 CAAAC 257 2 0.180128 CAAAG 258 0 -0.0297114 CAAAG 258 1 0.430106 CAAAG 258 2 0.781687 CAAAT 259 0 -0.25503 CAAAT 259 1 -0.045615 CAAAT 259 2 -0.430193 CAACA 260 0 0.241585 CAACA 260 1 0.494902 CAACA 260 2 0.201171 CAACC 261 0 0.192964 CAACC 261 1 -0.741457 CAACC 261 2 -0.26982 CAACG 262 0 0.233192 CAACG 262 1 -0.41508 CAACG 262 2 0.665998 CAACT 263 0 -0.540442 CAACT 263 1 -0.081372 CAACT 263 2 -0.432614 CAAGA 264 0 0.560939 CAAGA 264 1 0.424489 CAAGA 264 2 0.139403 CAAGC 265 0 0.312589 CAAGC 265 1 -0.263853 CAAGC 265 2 0.307181 CAAGG 266 0 0.110464 CAAGG 266 1 -0.200342 CAAGG 266 2 0.746796 CAAGT 267 0 -0.838636 CAAGT 267 1 -0.150137 CAAGT 267 2 -0.721835 CAATA 268 0 -0.545289 CAATA 268 1 0.0618176 CAATA 268 2 0.120309 CAATC 269 0 0.391818 CAATC 269 1 -0.488573 CAATC 269 2 0.0858131 CAATG 270 0 -0.348593 CAATG 270 1 0.413127 CAATG 270 2 0.52899 CAATT 271 0 0.14147 CAATT 271 1 -0.0756523 CAATT 271 2 -0.582017 CACAA 272 0 0.361172 CACAA 272 1 0.149572 CACAA 272 2 -0.00753041 CACAC 273 0 0.0411306 CACAC 273 1 -0.547949 CACAC 273 2 0.0914089 CACAG 274 0 -0.269732 CACAG 274 1 -0.135512 CACAG 274 2 0.351636 CACAT 275 0 -0.356712 CACAT 275 1 0.110799 CACAT 275 2 -0.317224 CACCA 276 0 -0.195239 CACCA 276 1 0.0944491 CACCA 276 2 -0.178246 CACCC 277 0 1.17964 CACCC 277 1 -0.185128 CACCC 277 2 0.608598 CACCG 278 0 0.581008 CACCG 278 1 0.0449726 CACCG 278 2 0.778109 CACCT 279 0 -0.768919 CACCT 279 1 -0.092815 CACCT 279 2 -0.376072 CACGA 280 0 0.274837 CACGA 280 1 -0.0918489 CACGA 280 2 0.339073 CACGC 281 0 0.388855 CACGC 281 1 -0.474326 CACGC 281 2 -0.826681 CACGG 282 0 0.0585341 CACGG 282 1 -0.538545 CACGG 282 2 0.486857 CACGT 283 0 -0.517632 CACGT 283 1 0.309796 CACGT 283 2 -0.563093 CACTA 284 0 -0.575818 CACTA 284 1 -0.119374 CACTA 284 2 0.0596706 CACTC 285 0 0.237077 CACTC 285 1 -0.274989 CACTC 285 2 0.238677 CACTG 286 0 -0.362199 CACTG 286 1 -0.0406839 CACTG 286 2 0.544449 CACTT 287 0 0.336314 CACTT 287 1 0.18023 CACTT 287 2 -0.786415 CAGAA 288 0 0.18561 CAGAA 288 1 0.07699 CAGAA 288 2 0.013792 CAGAC 289 0 -0.169126 CAGAC 289 1 -0.432884 CAGAC 289 2 -0.260643 CAGAG 290 0 0.188281 CAGAG 290 1 0.32898 CAGAG 290 2 0.986631 CAGAT 291 0 -0.182623 CAGAT 291 1 0.0159641 CAGAT 291 2 -0.446388 CAGCA 292 0 -0.0367314 CAGCA 292 1 -0.0869756 CAGCA 292 2 0.186412 CAGCC 293 0 0.167398 CAGCC 293 1 -0.594786 CAGCC 293 2 0.268562 CAGCG 294 0 0.955513 CAGCG 294 1 -0.00583097 CAGCG 294 2 0.533296 CAGCT 295 0 -0.479015 CAGCT 295 1 0.232404 CAGCT 295 2 -0.625258 CAGGA 296 0 0.641482 CAGGA 296 1 -0.00703865 CAGGA 296 2 0.357047 CAGGC 297 0 0.597034 CAGGC 297 1 0.12443 CAGGC 297 2 -0.355143 CAGGG 298 0 -0.276581 CAGGG 298 1 -0.335273 CAGGG 298 2 0.110732 CAGGT 299 0 -1.28326 CAGGT 299 1 0.0852522 CAGGT 299 2 -0.260835 CAGTA 300 0 -0.552486 CAGTA 300 1 0.055157 CAGTA 300 2 -0.650915 CAGTC 301 0 0.17087 CAGTC 301 1 -0.466092 CAGTC 301 2 0.221202 CAGTG 302 0 0.0073383 CAGTG 302 1 0.0128663 CAGTG 302 2 0.799026 CAGTT 303 0 0.231501 CAGTT 303 1 0.142679 CAGTT 303 2 -0.328115 CATAA 304 0 0.255257 CATAA 304 1 -4.90095 CATAA 304 2 -0.010603 CATAC 305 0 0.0782458 CATAC 305 1 0.288643 CATAC 305 2 0.35947 CATAG 306 0 -0.103459 CATAG 306 1 -4.327 CATAG 306 2 0.205601 CATAT 307 0 -0.265553 CATAT 307 1 0.742495 CATAT 307 2 -0.373662 CATCA 308 0 -0.0779868 CATCA 308 1 0.113297 CATCA 308 2 0.340088 CATCC 309 0 0.790058 CATCC 309 1 -0.300047 CATCC 309 2 0.331754 CATCG 310 0 0.150967 CATCG 310 1 -0.152847 CATCG 310 2 -0.10872 CATCT 311 0 -0.619317 CATCT 311 1 0.0273526 CATCT 311 2 -0.889079 CATGA 312 0 0.150273 CATGA 312 1 -4.67765 CATGA 312 2 0.227151 CATGC 313 0 0.157202 CATGC 313 1 0.0859781 CATGC 313 2 0.0420169 CATGG 314 0 0.456753 CATGG 314 1 0.788353 CATGG 314 2 0.632121 CATGT 315 0 -0.567615 CATGT 315 1 0.256955 CATGT 315 2 -0.829429 CATTA 316 0 -0.454384 CATTA 316 1 0.27693 CATTA 316 2 0.0801075 CATTC 317 0 0.675083 CATTC 317 1 -0.345699 CATTC 317 2 0.245733 CATTG 318 0 -0.684556 CATTG 318 1 0.234128 CATTG 318 2 0.569697 CATTT 319 0 0.0321821 CATTT 319 1 -0.227214 CATTT 319 2 -0.733653 CCAAA 320 0 0.530553 CCAAA 320 1 0.42579 CCAAA 320 2 0.183514 CCAAC 321 0 -0.0178606 CCAAC 321 1 -0.387749 CCAAC 321 2 0.0206212 CCAAG 322 0 -0.435308 CCAAG 322 1 0.103322 CCAAG 322 2 0.471654 CCAAT 323 0 -0.428179 CCAAT 323 1 -0.305168 CCAAT 323 2 -0.725504 CCACA 324 0 0.0771927 CCACA 324 1 0.244506 CCACA 324 2 -0.0737472 CCACC 325 0 0.459219 CCACC 325 1 -0.13731 CCACC 325 2 0.0171897 CCACG 326 0 0.628789 CCACG 326 1 0.406309 CCACG 326 2 1.08533 CCACT 327 0 -0.671971 CCACT 327 1 -0.272064 CCACT 327 2 -0.546352 CCAGA 328 0 0.571174 CCAGA 328 1 0.194645 CCAGA 328 2 0.319866 CCAGC 329 0 -0.000834409 CCAGC 329 1 -1.32518 CCAGC 329 2 -0.273416 CCAGG 330 0 0.189272 CCAGG 330 1 0.0702991 CCAGG 330 2 0.372087 CCAGT 331 0 -0.682272 CCAGT 331 1 0.19701 CCAGT 331 2 -0.299173 CCATA 332 0 -0.496696 CCATA 332 1 0.240695 CCATA 332 2 0.167573 CCATC 333 0 0.420455 CCATC 333 1 -0.295883 CCATC 333 2 0.336022 CCATG 334 0 -0.434242 CCATG 334 1 -0.0768345 CCATG 334 2 0.137845 CCATT 335 0 0.18179 CCATT 335 1 -0.0267933 CCATT 335 2 -0.553386 CCCAA 336 0 0.232809 CCCAA 336 1 0.276981 CCCAA 336 2 -0.410892 CCCAC 337 0 -0.0753954 CCCAC 337 1 -0.387768 CCCAC 337 2 0.451334 CCCAG 338 0 -0.0266049 CCCAG 338 1 0.412438 CCCAG 338 2 0.500124 CCCAT 339 0 -0.20764 CCCAT 339 1 -0.486132 CCCAT 339 2 -0.425303 CCCCA 340 0 0.474893 CCCCA 340 1 0.51669 CCCCA 340 2 0.653142 CCCCC 341 0 -0.143098 CCCCC 341 1 -0.798508 CCCCC 341 2 -1.09861 CCCCG 342 0 0.322772 CCCCG 342 1 -0.113331 CCCCG 342 2 0.322772 CCCCT 343 0 -0.976008 CCCCT 343 1 -0.217725 CCCCT 343 2 -0.976008 CCCGA 344 0 0.629137 CCCGA 344 1 0.358733 CCCGA 344 2 0.180483 CCCGC 345 0 -1.11845 CCCGC 345 1 -0.380349 CCCGC 345 2 -0.748074 CCCGG 346 0 -0.536166 CCCGG 346 1 -0.699873 CCCGG 346 2 -0.165792 CCCGT 347 0 -0.110224 CCCGT 347 1 0.260151 CCCGT 347 2 0.260151 CCCTA 348 0 0.405921 CCCTA 348 1 -0.033447 CCCTA 348 2 -0.154973 CCCTC 349 0 -0.869966 CCCTC 349 1 -0.0100512 CCCTC 349 2 0.311939 CCCTG 350 0 0.426118 CCCTG 350 1 -0.667174 CCCTG 350 2 0.972037 CCCTT 351 0 -0.3221 CCCTT 351 1 0.184676 CCCTT 351 2 -1.07546 CCGAA 352 0 0.57895 CCGAA 352 1 0.103807 CCGAA 352 2 -0.229712 CCGAC 353 0 -0.281808 CCGAC 353 1 -0.664847 CCGAC 353 2 -0.00329803 CCGAG 354 0 -0.772429 CCGAG 354 1 0.0871418 CCGAG 354 2 0.657591 CCGAT 355 0 -0.563526 CCGAT 355 1 0.13366 CCGAT 355 2 -0.199859 CCGCA 356 0 0.492286 CCGCA 356 1 -0.20332 CCGCA 356 2 0.534954 CCGCC 357 0 -0.228254 CCGCC 357 1 0.167058 CCGCC 357 2 0.229578 CCGCG 358 0 -0.312516 CCGCG 358 1 -0.764502 CCGCG 358 2 -0.0480546 CCGCT 359 0 -0.256429 CCGCT 359 1 0.306817 CCGCT 359 2 -0.820246 CCGGA 360 0 0.435644 CCGGA 360 1 -0.14863 CCGGA 360 2 0.203725 CCGGC 361 0 0.162587 CCGGC 361 1 -0.314989 CCGGC 361 2 0.397095 CCGGG 362 0 -0.110624 CCGGG 362 1 -1.28745 CCGGG 362 2 0.168837 CCGGT 363 0 -0.448661 CCGGT 363 1 0.352429 CCGGT 363 2 -0.496722 CCGTA 364 0 -0.489857 CCGTA 364 1 -0.64423 CCGTA 364 2 -0.243352 CCGTC 365 0 0.648496 CCGTC 365 1 0.0388733 CCGTC 365 2 0.341702 CCGTG 366 0 -0.0944015 CCGTG 366 1 -0.390807 CCGTG 366 2 0.575314 CCGTT 367 0 -0.149531 CCGTT 367 1 0.40239 CCGTT 367 2 -0.466493 CCTAA 368 0 0.137629 CCTAA 368 1 -4.10039 CCTAA 368 2 0.0453054 CCTAC 369 0 0.306902 CCTAC 369 1 0.521396 CCTAC 369 2 0.397506 CCTAG 370 0 -0.0255283 CCTAG 370 1 -3.34511 CCTAG 370 2 0.282241 CCTAT 371 0 -0.386249 CCTAT 371 1 0.764739 CCTAT 371 2 -0.599855 CCTCA 372 0 -0.0954955 CCTCA 372 1 -0.0346853 CCTCA 372 2 0.0826032 CCTCC 373 0 0.807185 CCTCC 373 1 -0.132666 CCTCC 373 2 0.334885 CCTCG 374 0 -0.275256 CCTCG 374 1 0.204205 CCTCG 374 2 0.481837 CCTCT 375 0 -0.397213 CCTCT 375 1 -0.0136317 CCTCT 375 2 -0.763154 CCTGA 376 0 0.182482 CCTGA 376 1 -3.50788 CCTGA 376 2 0.271637 CCTGC 377 0 0.250612 CCTGC 377 1 0.339604 CCTGC 377 2 0.00824576 CCTGG 378 0 0.132826 CCTGG 378 1 0.221818 CCTGG 378 2 0.563408 CCTGT 379 0 -0.442867 CCTGT 379 1 0.402323 CCTGT 379 2 -0.995389 CCTTA 380 0 -0.72106 CCTTA 380 1 0.0727167 CCTTA 380 2 -0.249571 CCTTC 381 0 0.504941 CCTTC 381 1 0.0678848 CCTTC 381 2 0.0291729 CCTTG 382 0 -0.91913 CCTTG 382 1 -0.107711 CCTTG 382 2 0.559126 CCTTT 383 0 0.343971 CCTTT 383 1 -0.0616838 CCTTT 383 2 -0.251912 CGAAA 384 0 0.362116 CGAAA 384 1 0.265804 CGAAA 384 2 -0.0489091 CGAAC 385 0 -0.175173 CGAAC 385 1 -0.852969 CGAAC 385 2 -0.656254 CGAAG 386 0 -0.203858 CGAAG 386 1 0.218684 CGAAG 386 2 0.857975 CGAAT 387 0 -0.247702 CGAAT 387 1 -0.0387949 CGAAT 387 2 -0.407788 CGACA 388 0 0.146121 CGACA 388 1 0.325404 CGACA 388 2 0.214406 CGACC 389 0 0.145614 CGACC 389 1 -0.240716 CGACC 389 2 -0.0288403 CGACG 390 0 0.576282 CGACG 390 1 -0.0543413 CGACG 390 2 0.38769 CGACT 391 0 -0.592024 CGACT 391 1 -0.21501 CGACT 391 2 -0.407102 CGAGA 392 0 0.342531 CGAGA 392 1 0.274235 CGAGA 392 2 -0.143559 CGAGC 393 0 0.570316 CGAGC 393 1 0.379596 CGAGC 393 2 -0.0138855 CGAGG 394 0 -0.097513 CGAGG 394 1 -1.30988 CGAGG 394 2 0.689607 CGAGT 395 0 -0.633007 CGAGT 395 1 -0.100141 CGAGT 395 2 -0.288844 CGATA 396 0 -0.827927 CGATA 396 1 -0.792417 CGATA 396 2 0.0101131 CGATC 397 0 0.108115 CGATC 397 1 -0.288512 CGATC 397 2 -0.131629 CGATG 398 0 0.0467252 CGATG 398 1 0.799669 CGATG 398 2 0.923351 CGATT 399 0 0.231455 CGATT 399 1 -0.0844376 CGATT 399 2 -0.80496 CGCAA 400 0 -0.014926 CGCAA 400 1 -0.609269 CGCAA 400 2 -0.268266 CGCAC 401 0 0.192376 CGCAC 401 1 0.358945 CGCAC 401 2 0.0672115 CGCAG 402 0 -0.244528 CGCAG 402 1 0.440557 CGCAG 402 2 0.781559 CGCAT 403 0 0.0409651 CGCAT 403 1 0.170149 CGCAT 403 2 -0.29594 CGCCA 404 0 -0.148971 CGCCA 404 1 0.167262 CGCCA 404 2 -0.0558812 CGCCC 405 0 -0.0910549 CGCCC 405 1 -1.09169 CGCCC 405 2 0.120252 CGCCG 406 0 0.572237 CGCCG 406 1 -0.503903 CGCCG 406 2 0.120252 CGCCT 407 0 -0.192963 CGCCT 407 1 0.273802 CGCCT 407 2 -0.063753 CGCGA 408 0 0.350304 CGCGA 408 1 -0.815751 CGCGA 408 2 0.734847 CGCGC 409 0 -0.179417 CGCGC 409 1 0.517058 CGCGC 409 2 -0.666714 CGCGG 410 0 -0.148779 CGCGG 410 1 -0.0802966 CGCGG 410 2 -0.784496 CGCGT 411 0 -0.19962 CGCGT 411 1 0.146683 CGCGT 411 2 -0.404349 CGCTA 412 0 -0.418086 CGCTA 412 1 -0.277633 CGCTA 412 2 0.116 CGCTC 413 0 0.509325 CGCTC 413 1 -0.938271 CGCTC 413 2 0.397761 CGCTG 414 0 -0.310937 CGCTG 414 1 -0.344838 CGCTG 414 2 0.223144 CGCTT 415 0 0.0585944 CGCTT 415 1 0.545228 CGCTT 415 2 -0.760043 CGGAA 416 0 0.2923 CGGAA 416 1 -0.0267469 CGGAA 416 2 -0.0612443 CGGAC 417 0 -0.512763 CGGAC 417 1 -0.825428 CGGAC 417 2 -0.132079 CGGAG 418 0 -0.623991 CGGAG 418 1 0.0721948 CGGAG 418 2 0.389762 CGGAT 419 0 0.249377 CGGAT 419 1 0.500181 CGGAT 419 2 -0.194118 CGGCA 420 0 0.0487902 CGGCA 420 1 0.590868 CGGCA 420 2 0.14618 CGGCC 421 0 0.223144 CGGCC 421 1 -0.216224 CGGCC 421 2 -0.0281732 CGGCG 422 0 0.73682 CGGCG 422 1 -2.04819 CGGCG 422 2 0.464116 CGGCT 423 0 -1.45243 CGGCT 423 1 0.157005 CGGCT 423 2 -0.507745 CGGGA 424 0 0.371024 CGGGA 424 1 0.0211276 CGGGA 424 2 0.263393 CGGGC 425 0 -0.112214 CGGGC 425 1 0.0300999 CGGGC 425 2 -0.460522 CGGGG 426 0 -0.748206 CGGGG 426 1 -0.449476 CGGGG 426 2 0.561128 CGGGT 427 0 -0.0817297 CGGGT 427 1 0.130179 CGGGT 427 2 -0.571751 CGGTA 428 0 -0.280203 CGGTA 428 1 -0.127326 CGGTA 428 2 -0.129754 CGGTC 429 0 0.527355 CGGTC 429 1 0.0920386 CGGTC 429 2 0.126465 CGGTG 430 0 -0.719285 CGGTG 430 1 -0.386266 CGGTG 430 2 0.71674 CGGTT 431 0 0.152555 CGGTT 431 1 0.189859 CGGTT 431 2 -0.613628 CGTAA 432 0 0.340581 CGTAA 432 1 -3.45283 CGTAA 432 2 -0.21779 CGTAC 433 0 0.347778 CGTAC 433 1 0.988135 CGTAC 433 2 0.0212013 CGTAG 434 0 -0.351234 CGTAG 434 1 -3.06984 CGTAG 434 2 0.507484 CGTAT 435 0 -0.383152 CGTAT 435 1 0.433873 CGTAT 435 2 -0.222906 CGTCA 436 0 -0.117286 CGTCA 436 1 0.0127173 CGTCA 436 2 -0.104513 CGTCC 437 0 0.28583 CGTCC 437 1 0.206594 CGTCC 437 2 0.618151 CGTCG 438 0 0.30711 CGTCG 438 1 -0.330671 CGTCG 438 2 0.459111 CGTCT 439 0 -0.242184 CGTCT 439 1 0.0584591 CGTCT 439 2 -0.767072 CGTGA 440 0 0.545754 CGTGA 440 1 -3.07519 CGTGA 440 2 0.602813 CGTGC 441 0 0.095367 CGTGC 441 1 0.16348 CGTGC 441 2 0.508322 CGTGG 442 0 0.0622433 CGTGG 442 1 0.535722 CGTGG 442 2 -0.0115532 CGTGT 443 0 -0.663595 CGTGT 443 1 0.0692809 CGTGT 443 2 -1.24394 CGTTA 444 0 -0.23857 CGTTA 444 1 -0.140903 CGTTA 444 2 0.391557 CGTTC 445 0 0.474074 CGTTC 445 1 0.263831 CGTTC 445 2 0.273731 CGTTG 446 0 -0.446457 CGTTG 446 1 -0.00204892 CGTTG 446 2 0.700883 CGTTT 447 0 -0.0055201 CGTTT 447 1 -0.0517388 CGTTT 447 2 -1.17434 CTAAA 448 0 0.300757 CTAAA 448 1 0.298494 CTAAA 448 2 -0.170151 CTAAC 449 0 0.0665394 CTAAC 449 1 -0.494181 CTAAC 449 2 0.266406 CTAAG 450 0 -0.223385 CTAAG 450 1 0.0689173 CTAAG 450 2 0.309421 CTAAT 451 0 -0.280743 CTAAT 451 1 -0.134967 CTAAT 451 2 -0.273469 CTACA 452 0 -0.0140209 CTACA 452 1 0.155881 CTACA 452 2 0.136626 CTACC 453 0 0.319313 CTACC 453 1 -0.183052 CTACC 453 2 0.184348 CTACG 454 0 0.555695 CTACG 454 1 -0.00639478 CTACG 454 2 0.816042 CTACT 455 0 -0.325607 CTACT 455 1 -0.0746894 CTACT 455 2 -0.626944 CTAGA 456 0 0.530998 CTAGA 456 1 -0.164774 CTAGA 456 2 0.0645385 CTAGC 457 0 0.198546 CTAGC 457 1 -0.0685223 CTAGC 457 2 0.246863 CTAGG 458 0 -0.0312712 CTAGG 458 1 -0.390906 CTAGG 458 2 0.521294 CTAGT 459 0 -0.654086 CTAGT 459 1 0.206121 CTAGT 459 2 -0.523248 CTATA 460 0 -1.25925 CTATA 460 1 -0.117595 CTATA 460 2 -0.156345 CTATC 461 0 0.627981 CTATC 461 1 -0.0980689 CTATC 461 2 -0.0416579 CTATG 462 0 0.0506703 CTATG 462 1 0.238978 CTATG 462 2 0.656067 CTATT 463 0 0.0302602 CTATT 463 1 -0.00923871 CTATT 463 2 -0.371943 CTCAA 464 0 0.30448 CTCAA 464 1 0.203283 CTCAA 464 2 0.282282 CTCAC 465 0 0.174939 CTCAC 465 1 -0.62629 CTCAC 465 2 0.266967 CTCAG 466 0 -0.169735 CTCAG 466 1 0.194029 CTCAG 466 2 0.225237 CTCAT 467 0 -0.352704 CTCAT 467 1 -0.095131 CTCAT 467 2 -0.744341 CTCCA 468 0 -0.33169 CTCCA 468 1 0.114981 CTCCA 468 2 0.214355 CTCCC 469 0 0.621641 CTCCC 469 1 -0.248804 CTCCC 469 2 0.587737 CTCCG 470 0 0.327881 CTCCG 470 1 -0.0759577 CTCCG 470 2 0.0642923 CTCCT 471 0 -0.195558 CTCCT 471 1 -0.0237741 CTCCT 471 2 -0.927176 CTCGA 472 0 0.232015 CTCGA 472 1 0.0454844 CTCGA 472 2 0.245275 CTCGC 473 0 0.282657 CTCGC 473 1 -0.183487 CTCGC 473 2 -0.572282 CTCGG 474 0 0.142895 CTCGG 474 1 -0.559643 CTCGG 474 2 0.0903026 CTCGT 475 0 -0.550252 CTCGT 475 1 0.223752 CTCGT 475 2 -0.07832 CTCTA 476 0 -1.28123 CTCTA 476 1 -0.548268 CTCTA 476 2 -0.180812 CTCTC 477 0 0.641362 CTCTC 477 1 0.0866221 CTCTC 477 2 0.179898 CTCTG 478 0 -0.184094 CTCTG 478 1 0.0602607 CTCTG 478 2 0.587055 CTCTT 479 0 0.293743 CTCTT 479 1 0.267072 CTCTT 479 2 -0.522406 CTGAA 480 0 0.252745 CTGAA 480 1 0.184746 CTGAA 480 2 -0.236222 CTGAC 481 0 0.00337131 CTGAC 481 1 -0.502289 CTGAC 481 2 0.318455 CTGAG 482 0 -0.117714 CTGAG 482 1 -0.386594 CTGAG 482 2 0.301359 CTGAT 483 0 -0.254407 CTGAT 483 1 0.191562 CTGAT 483 2 -0.236222 CTGCA 484 0 0.13022 CTGCA 484 1 0.0217514 CTGCA 484 2 0.059373 CTGCC 485 0 -0.268568 CTGCC 485 1 0.0609126 CTGCC 485 2 0.383683 CTGCG 486 0 0.177344 CTGCG 486 1 -0.641802 CTGCG 486 2 -0.373534 CTGCT 487 0 -0.160788 CTGCT 487 1 0.145229 CTGCT 487 2 -0.0951242 CTGGA 488 0 0.500877 CTGGA 488 1 0.0494784 CTGGA 488 2 0.169038 CTGGC 489 0 0.298978 CTGGC 489 1 -0.0674439 CTGGC 489 2 0.327502 CTGGG 490 0 0.0795378 CTGGG 490 1 -0.200814 CTGGG 490 2 0.362592 CTGGT 491 0 -0.864921 CTGGT 491 1 0.063273 CTGGT 491 2 -0.581866 CTGTA 492 0 -0.593275 CTGTA 492 1 -0.178483 CTGTA 492 2 -0.341963 CTGTC 493 0 0.179913 CTGTC 493 1 -0.030054 CTGTC 493 2 -0.0252264 CTGTG 494 0 0.416307 CTGTG 494 1 -0.17402 CTGTG 494 2 0.896596 CTGTT 495 0 0.0787727 CTGTT 495 1 0.200519 CTGTT 495 2 -0.384187 CTTAA 496 0 0.0031442 CTTAA 496 1 -4.68815 CTTAA 496 2 -0.0472132 CTTAC 497 0 0.215652 CTTAC 497 1 0.59548 CTTAC 497 2 0.312579 CTTAG 498 0 -0.0760343 CTTAG 498 1 -4.21693 CTTAG 498 2 0.255541 CTTAT 499 0 -0.10235 CTTAT 499 1 0.646059 CTTAT 499 2 -0.38273 CTTCA 500 0 -0.317996 CTTCA 500 1 0.229711 CTTCA 500 2 0.213607 CTTCC 501 0 0.662837 CTTCC 501 1 -0.0930091 CTTCC 501 2 -0.0196858 CTTCG 502 0 0.318319 CTTCG 502 1 -0.461158 CTTCG 502 2 0.395929 CTTCT 503 0 -0.275804 CTTCT 503 1 -0.0906634 CTTCT 503 2 -0.593692 CTTGA 504 0 0.134898 CTTGA 504 1 -4.48809 CTTGA 504 2 -0.152204 CTTGC 505 0 0.229548 CTTGC 505 1 0.164533 CTTGC 505 2 -0.0321785 CTTGG 506 0 0.441983 CTTGG 506 1 0.715365 CTTGG 506 2 0.650713 CTTGT 507 0 -0.59629 CTTGT 507 1 0.305181 CTTGT 507 2 -0.265581 CTTTA 508 0 -0.564246 CTTTA 508 1 0.0731755 CTTTA 508 2 -0.11932 CTTTC 509 0 0.734554 CTTTC 509 1 -0.223696 CTTTC 509 2 0.30945 CTTTG 510 0 -0.552899 CTTTG 510 1 0.559227 CTTTG 510 2 0.716841 CTTTT 511 0 0.0395943 CTTTT 511 1 -0.365933 CTTTT 511 2 -0.790157 GAAAA 512 0 0.363834 GAAAA 512 1 0.215389 GAAAA 512 2 0.194411 GAAAC 513 0 -0.12558 GAAAC 513 1 -0.162773 GAAAC 513 2 0.00485339 GAAAG 514 0 -0.042126 GAAAG 514 1 0.00542716 GAAAG 514 2 0.545144 GAAAT 515 0 -0.310994 GAAAT 515 1 -0.128419 GAAAT 515 2 -0.706397 GAACA 516 0 0.200609 GAACA 516 1 0.341143 GAACA 516 2 0.0657525 GAACC 517 0 0.0912629 GAACC 517 1 -0.784661 GAACC 517 2 0.148244 GAACG 518 0 -0.0115861 GAACG 518 1 -0.544184 GAACG 518 2 0.384082 GAACT 519 0 -0.273734 GAACT 519 1 0.0629739 GAACT 519 2 -0.448977 GAAGA 520 0 0.695749 GAAGA 520 1 0.4677 GAAGA 520 2 0.201804 GAAGC 521 0 -0.00347629 GAAGC 521 1 -0.304952 GAAGC 521 2 0.0131899 GAAGG 522 0 -0.0992185 GAAGG 522 1 0.0092844 GAAGG 522 2 0.346118 GAAGT 523 0 -0.741342 GAAGT 523 1 -0.244189 GAAGT 523 2 -0.282461 GAATA 524 0 -0.422416 GAATA 524 1 0.110806 GAATA 524 2 -0.0599352 GAATC 525 0 0.291098 GAATC 525 1 -0.000268271 GAATC 525 2 -0.0563875 GAATG 526 0 -0.281154 GAATG 526 1 0.0226273 GAATG 526 2 0.564162 GAATT 527 0 0.240232 GAATT 527 1 -0.112336 GAATT 527 2 -0.429085 GACAA 528 0 0.652335 GACAA 528 1 0.448363 GACAA 528 2 0.382158 GACAC 529 0 -0.525997 GACAC 529 1 -0.0966584 GACAC 529 2 0.102734 GACAG 530 0 -0.662581 GACAG 530 1 -0.0773228 GACAG 530 2 0.00198793 GACAT 531 0 -0.155516 GACAT 531 1 -0.360886 GACAT 531 2 -0.470371 GACCA 532 0 -0.131373 GACCA 532 1 0.298573 GACCA 532 2 0.240691 GACCC 533 0 0.123038 GACCC 533 1 -0.881187 GACCC 533 2 0.0680432 GACCG 534 0 0.51088 GACCG 534 1 -0.0209874 GACCG 534 2 0.125899 GACCT 535 0 -0.150368 GACCT 535 1 0.0126315 GACCT 535 2 -0.485843 GACGA 536 0 0.815385 GACGA 536 1 0.433301 GACGA 536 2 0.591072 GACGC 537 0 0.1206 GACGC 537 1 -0.149172 GACGC 537 2 -0.539986 GACGG 538 0 -0.37259 GACGG 538 1 -1.18657 GACGG 538 2 0.4516 GACGT 539 0 -0.932788 GACGT 539 1 0.0594676 GACGT 539 2 -0.645825 GACTA 540 0 -0.424587 GACTA 540 1 0.13399 GACTA 540 2 -0.389186 GACTC 541 0 0.174374 GACTC 541 1 -0.573756 GACTC 541 2 0.209774 GACTG 542 0 -0.294588 GACTG 542 1 0.0577035 GACTG 542 2 0.82912 GACTT 543 0 0.288469 GACTT 543 1 0.0292813 GACTT 543 2 -0.697782 GAGAA 544 0 0.32637 GAGAA 544 1 -0.00392112 GAGAA 544 2 -0.0528223 GAGAC 545 0 0.388173 GAGAC 545 1 -0.975383 GAGAC 545 2 0.389903 GAGAG 546 0 -0.57701 GAGAG 546 1 0.189923 GAGAG 546 2 -0.155821 GAGAT 547 0 -0.505546 GAGAT 547 1 0.144177 GAGAT 547 2 -0.0705146 GAGCA 548 0 -0.281563 GAGCA 548 1 -0.0178064 GAGCA 548 2 0.0383193 GAGCC 549 0 0.59217 GAGCC 549 1 0.139618 GAGCC 549 2 0.624751 GAGCG 550 0 0.339374 GAGCG 550 1 -0.883836 GAGCG 550 2 0.238033 GAGCT 551 0 -0.208906 GAGCT 551 1 0.167778 GAGCT 551 2 -0.523867 GAGGA 552 0 0.60487 GAGGA 552 1 0.0414418 GAGGA 552 2 0.106314 GAGGC 553 0 0.274498 GAGGC 553 1 0.253279 GAGGC 553 2 0.432865 GAGGG 554 0 -0.233373 GAGGG 554 1 -0.595659 GAGGG 554 2 -0.12448 GAGGT 555 0 -1.04874 GAGGT 555 1 0.0572819 GAGGT 555 2 -0.300023 GAGTA 556 0 -0.524592 GAGTA 556 1 -0.229797 GAGTA 556 2 0.059676 GAGTC 557 0 0.504319 GAGTC 557 1 -0.0661659 GAGTC 557 2 -0.308047 GAGTG 558 0 -0.20627 GAGTG 558 1 -0.588745 GAGTG 558 2 0.840442 GAGTT 559 0 0.116377 GAGTT 559 1 0.339934 GAGTT 559 2 -0.803598 GATAA 560 0 0.0715965 GATAA 560 1 -4.19478 GATAA 560 2 0.216577 GATAC 561 0 -0.0495211 GATAC 561 1 0.75775 GATAC 561 2 0.131887 GATAG 562 0 -0.212846 GATAG 562 1 -3.57996 GATAG 562 2 0.0725484 GATAT 563 0 0.0496317 GATAT 563 1 0.680865 GATAT 563 2 -0.41882 GATCA 564 0 -0.0606817 GATCA 564 1 0.199962 GATCA 564 2 -0.44821 GATCC 565 0 0.666248 GATCC 565 1 -0.450628 GATCC 565 2 0.51064 GATCG 566 0 0.0994929 GATCG 566 1 -0.574767 GATCG 566 2 0.938085 GATCT 567 0 -0.341646 GATCT 567 1 0.0690114 GATCT 567 2 -0.709634 GATGA 568 0 0.532454 GATGA 568 1 -4.06404 GATGA 568 2 0.366387 GATGC 569 0 -0.0432334 GATGC 569 1 -0.265345 GATGC 569 2 0.00681077 GATGG 570 0 0.0768634 GATGG 570 1 0.813064 GATGG 570 2 0.506832 GATGT 571 0 -0.711468 GATGT 571 1 0.23458 GATGT 571 2 -0.877706 GATTA 572 0 -0.424093 GATTA 572 1 0.173709 GATTA 572 2 -0.39018 GATTC 573 0 0.485229 GATTC 573 1 -0.180681 GATTC 573 2 0.316933 GATTG 574 0 -0.360398 GATTG 574 1 -0.191601 GATTG 574 2 0.679251 GATTT 575 0 0.155155 GATTT 575 1 0.00996262 GATTT 575 2 -0.553926 GCAAA 576 0 -0.159362 GCAAA 576 1 0.0785566 GCAAA 576 2 -0.0156465 GCAAC 577 0 0.289126 GCAAC 577 1 -0.479315 GCAAC 577 2 -0.180243 GCAAG 578 0 -0.0610035 GCAAG 578 1 0.676542 GCAAG 578 2 0.929268 GCAAT 579 0 -0.0227849 GCAAT 579 1 -0.229356 GCAAT 579 2 -0.564928 GCACA 580 0 -0.231934 GCACA 580 1 -0.029796 GCACA 580 2 0.277709 GCACC 581 0 0.436419 GCACC 581 1 0.0486692 GCACC 581 2 -0.405962 GCACG 582 0 0.72754 GCACG 582 1 0.317236 GCACG 582 2 0.679749 GCACT 583 0 -0.376806 GCACT 583 1 -0.103798 GCACT 583 2 -0.573015 GCAGA 584 0 0.516132 GCAGA 584 1 0.190417 GCAGA 584 2 -0.0746897 GCAGC 585 0 0.30971 GCAGC 585 1 0.0345512 GCAGC 585 2 -0.0886345 GCAGG 586 0 -0.582479 GCAGG 586 1 -2.28994 GCAGG 586 2 0.204452 GCAGT 587 0 -0.50244 GCAGT 587 1 0.273533 GCAGT 587 2 -0.0267997 GCATA 588 0 -0.69834 GCATA 588 1 -0.207655 GCATA 588 2 -0.0603266 GCATC 589 0 0.239227 GCATC 589 1 -0.183057 GCATC 589 2 0.0358501 GCATG 590 0 -5.20603e-05 GCATG 590 1 0.543419 GCATG 590 2 0.825095 GCATT 591 0 0.305024 GCATT 591 1 0.0519716 GCATT 591 2 -0.537558 GCCAA 592 0 0.430574 GCCAA 592 1 0.48559 GCCAA 592 2 0.443961 GCCAC 593 0 -0.210865 GCCAC 593 1 -1.9749 GCCAC 593 2 -0.156358 GCCAG 594 0 -0.210865 GCCAG 594 1 0.222325 GCCAG 594 2 -0.156358 GCCAT 595 0 -0.258765 GCCAT 595 1 -0.19361 GCCAT 595 2 -0.34484 GCCCA 596 0 -0.212884 GCCCA 596 1 -0.301006 GCCCA 596 2 -0.210529 GCCCC 597 0 -0.218044 GCCCC 597 1 -0.155153 GCCCC 597 2 0.772971 GCCCG 598 0 0.477565 GCCCG 598 1 -0.182741 GCCCG 598 2 0.571031 GCCCT 599 0 0.0715119 GCCCT 599 1 0.296832 GCCCT 599 2 -0.986278 GCCGA 600 0 0.377049 GCCGA 600 1 0.204081 GCCGA 600 2 0.454711 GCCGC 601 0 -0.0425598 GCCGC 601 1 -0.599905 GCCGC 601 2 -0.761028 GCCGG 602 0 0.454838 GCCGG 602 1 -1.34185 GCCGG 602 2 0.411689 GCCGT 603 0 -0.630347 GCCGT 603 1 0.256423 GCCGT 603 2 -0.302844 GCCTA 604 0 -0.29261 GCCTA 604 1 0.0676921 GCCTA 604 2 0.0466484 GCCTC 605 0 0.513097 GCCTC 605 1 -0.278106 GCCTC 605 2 0.615007 GCCTG 606 0 -0.416895 GCCTG 606 1 0.0785616 GCCTG 606 2 0.313529 GCCTT 607 0 0.116065 GCCTT 607 1 -0.0081073 GCCTT 607 2 -0.712324 GCGAA 608 0 -0.0333945 GCGAA 608 1 -0.218207 GCGAA 608 2 -0.04762 GCGAC 609 0 0.233741 GCGAC 609 1 -0.615559 GCGAC 609 2 -0.00937299 GCGAG 610 0 -0.308172 GCGAG 610 1 0.253293 GCGAG 610 2 0.625486 GCGAT 611 0 -0.000320465 GCGAT 611 1 0.354617 GCGAT 611 2 -0.43223 GCGCA 612 0 0.127834 GCGCA 612 1 0.035093 GCGCA 612 2 0.417736 GCGCC 613 0 0.109896 GCGCC 613 1 -0.399535 GCGCC 613 2 0.116408 GCGCG 614 0 0.895294 GCGCG 614 1 -1.10372 GCGCG 614 2 0.542079 GCGCT 615 0 -0.828374 GCGCT 615 1 0.271637 GCGCT 615 2 -0.821862 GCGGA 616 0 0.200453 GCGGA 616 1 -0.439232 GCGGA 616 2 -0.0461879 GCGGC 617 0 0.273156 GCGGC 617 1 -0.24686 GCGGC 617 2 -0.239483 GCGGG 618 0 0.13513 GCGGG 618 1 -0.0645385 GCGGG 618 2 0.502855 GCGGT 619 0 -0.603753 GCGGT 619 1 0.398085 GCGGT 619 2 -0.106813 GCGTA 620 0 -0.849493 GCGTA 620 1 -0.516715 GCGTA 620 2 -0.270817 GCGTC 621 0 -0.0729621 GCGTC 621 1 0.188119 GCGTC 621 2 0.331359 GCGTG 622 0 -0.00219796 GCGTG 622 1 0.086962 GCGTG 622 2 0.99633 GCGTT 623 0 0.43616 GCGTT 623 1 0.202543 GCGTT 623 2 -1.00648 GCTAA 624 0 0.105312 GCTAA 624 1 -3.82338 GCTAA 624 2 0.0148292 GCTAC 625 0 -0.119382 GCTAC 625 1 0.997633 GCTAC 625 2 0.31917 GCTAG 626 0 -0.193313 GCTAG 626 1 -3.13023 GCTAG 626 2 0.76433 GCTAT 627 0 0.033964 GCTAT 627 1 0.431987 GCTAT 627 2 -1.42116 GCTCA 628 0 -0.190999 GCTCA 628 1 -0.0235044 GCTCA 628 2 -0.392615 GCTCC 629 0 0.41719 GCTCC 629 1 0.0599715 GCTCC 629 2 0.39338 GCTCG 630 0 0.360438 GCTCG 630 1 -0.603324 GCTCG 630 2 0.637005 GCTCT 631 0 -0.243605 GCTCT 631 1 0.192443 GCTCT 631 2 -0.242875 GCTGA 632 0 0.148513 GCTGA 632 1 -3.73742 GCTGA 632 2 -0.0819236 GCTGC 633 0 0.321695 GCTGC 633 1 0.566647 GCTGC 633 2 -0.0696546 GCTGG 634 0 -0.0100964 GCTGG 634 1 0.112083 GCTGG 634 2 0.808214 GCTGT 635 0 -0.414034 GCTGT 635 1 0.420969 GCTGT 635 2 -0.778802 GCTTA 636 0 -0.623105 GCTTA 636 1 0.267211 GCTTA 636 2 0.0314888 GCTTC 637 0 0.271951 GCTTC 637 1 0.154202 GCTTC 637 2 0.299495 GCTTG 638 0 0.129503 GCTTG 638 1 0.0602534 GCTTG 638 2 0.846183 GCTTT 639 0 0.116214 GCTTT 639 1 -0.363305 GCTTT 639 2 -0.976792 GGAAA 640 0 0.21368 GGAAA 640 1 0.063995 GGAAA 640 2 -0.234179 GGAAC 641 0 0.422459 GGAAC 641 1 0.0346071 GGAAC 641 2 0.776583 GGAAG 642 0 -0.45095 GGAAG 642 1 0.150565 GGAAG 642 2 0.288804 GGAAT 643 0 -0.21942 GGAAT 643 1 -0.188643 GGAAT 643 2 -0.353613 GGACA 644 0 0.469581 GGACA 644 1 0.518041 GGACA 644 2 0.60171 GGACC 645 0 0.157905 GGACC 645 1 -0.835463 GGACC 645 2 -0.339642 GGACG 646 0 0.300756 GGACG 646 1 -0.162119 GGACG 646 2 0.315764 GGACT 647 0 -0.959777 GGACT 647 1 -0.106664 GGACT 647 2 -0.775346 GGAGA 648 0 0.0198727 GGAGA 648 1 0.0834971 GGAGA 648 2 0.0279208 GGAGC 649 0 -0.0121814 GGAGC 649 1 -0.375289 GGAGC 649 2 -0.193128 GGAGG 650 0 0.060748 GGAGG 650 1 -0.211706 GGAGG 650 2 0.413104 GGAGT 651 0 -0.065214 GGAGT 651 1 0.260194 GGAGT 651 2 -0.376821 GGATA 652 0 -0.577113 GGATA 652 1 -0.381003 GGATA 652 2 -0.0430836 GGATC 653 0 0.781045 GGATC 653 1 0.0432244 GGATC 653 2 0.210691 GGATG 654 0 -0.187167 GGATG 654 1 0.124974 GGATG 654 2 0.784722 GGATT 655 0 0.0652267 GGATT 655 1 0.163097 GGATT 655 2 -0.824684 GGCAA 656 0 0.20278 GGCAA 656 1 0.301718 GGCAA 656 2 0.128582 GGCAC 657 0 0.0272883 GGCAC 657 1 -0.68046 GGCAC 657 2 -0.137621 GGCAG 658 0 0.177355 GGCAG 658 1 -0.617575 GGCAG 658 2 0.493434 GGCAT 659 0 -0.370511 GGCAT 659 1 0.228449 GGCAT 659 2 -0.557012 GGCCA 660 0 -0.377877 GGCCA 660 1 0.419145 GGCCA 660 2 0.226773 GGCCC 661 0 0.00511543 GGCCC 661 1 -1.82253 GGCCC 661 2 -0.405465 GGCCG 662 0 0.594414 GGCCG 662 1 -0.723919 GGCCG 662 2 0.600057 GGCCT 663 0 -0.0259772 GGCCT 663 1 0.277529 GGCCT 663 2 -0.587787 GGCGA 664 0 0.170129 GGCGA 664 1 -0.312154 GGCGA 664 2 0.282864 GGCGC 665 0 -0.354124 GGCGC 665 1 -0.396711 GGCGC 665 2 -0.213579 GGCGG 666 0 0.4082 GGCGG 666 1 -0.134345 GGCGG 666 2 0.615183 GGCGT 667 0 -0.301476 GGCGT 667 1 0.433637 GGCGT 667 2 -0.995423 GGCTA 668 0 0.0244024 GGCTA 668 1 0.033227 GGCTA 668 2 0.27359 GGCTC 669 0 0.5399 GGCTC 669 1 0.207579 GGCTC 669 2 0.287022 GGCTG 670 0 -0.619817 GGCTG 670 1 0.00337381 GGCTG 670 2 0.63129 GGCTT 671 0 -0.00217732 GGCTT 671 1 -0.0981116 GGCTT 671 2 -1.30008 GGGAA 672 0 0.232426 GGGAA 672 1 0.0301561 GGGAA 672 2 -0.182605 GGGAC 673 0 0.112845 GGGAC 673 1 -0.194576 GGGAC 673 2 -0.131749 GGGAG 674 0 -0.0985359 GGGAG 674 1 -0.441123 GGGAG 674 2 0.387307 GGGAT 675 0 -0.444283 GGGAT 675 1 0.265537 GGGAT 675 2 -0.0181581 GGGCA 676 0 -0.0948116 GGGCA 676 1 -0.187661 GGGCA 676 2 -0.212462 GGGCC 677 0 0.822856 GGGCC 677 1 -0.176907 GGGCC 677 2 -0.0873025 GGGCG 678 0 -0.245899 GGGCG 678 1 -0.850636 GGGCG 678 2 0.284944 GGGCT 679 0 -0.417585 GGGCT 679 1 0.491881 GGGCT 679 2 0.00460297 GGGGA 680 0 0.724943 GGGGA 680 1 -0.111689 GGGGA 680 2 0.593006 GGGGC 681 0 0.0883368 GGGGC 681 1 -0.325501 GGGGC 681 2 -0.0824385 GGGGG 682 0 -0.50637 GGGGG 682 1 -1.18847 GGGGG 682 2 -1.15672 GGGGT 683 0 -0.584728 GGGGT 683 1 0.768842 GGGGT 683 2 0.223703 GGGTA 684 0 -0.498723 GGGTA 684 1 -0.298053 GGGTA 684 2 0.00778334 GGGTC 685 0 0.355805 GGGTC 685 1 0.312855 GGGTC 685 2 0.0077843 GGGTG 686 0 -1.04156 GGGTG 686 1 -1.20861 GGGTG 686 2 0.409125 GGGTT 687 0 0.392838 GGGTT 687 1 0.362603 GGGTT 687 2 -0.34691 GGTAA 688 0 0.0301603 GGTAA 688 1 -3.82122 GGTAA 688 2 0.0543207 GGTAC 689 0 0.797296 GGTAC 689 1 1.06912 GGTAC 689 2 0.221118 GGTAG 690 0 -0.438094 GGTAG 690 1 -3.46078 GGTAG 690 2 0.206219 GGTAT 691 0 -0.203456 GGTAT 691 1 0.560281 GGTAT 691 2 -0.278143 GGTCA 692 0 0.0105307 GGTCA 692 1 0.303098 GGTCA 692 2 0.348639 GGTCC 693 0 0.396838 GGTCC 693 1 -0.291157 GGTCC 693 2 0.758665 GGTCG 694 0 -0.0770341 GGTCG 694 1 -1.1762 GGTCG 694 2 -0.620248 GGTCT 695 0 -0.239154 GGTCT 695 1 0.202716 GGTCT 695 2 -1.48677 GGTGA 696 0 0.324872 GGTGA 696 1 -3.11364 GGTGA 696 2 0.398178 GGTGC 697 0 0.0650159 GGTGC 697 1 0.568968 GGTGC 697 2 0.0724701 GGTGG 698 0 0.291719 GGTGG 698 1 0.856651 GGTGG 698 2 -0.0918328 GGTGT 699 0 -0.721333 GGTGT 699 1 -0.27321 GGTGT 699 2 -0.488809 GGTTA 700 0 -0.397932 GGTTA 700 1 0.329289 GGTTA 700 2 0.0346867 GGTTC 701 0 0.440998 GGTTC 701 1 -0.345375 GGTTC 701 2 -0.180077 GGTTG 702 0 0.0557349 GGTTG 702 1 0.150029 GGTTG 702 2 0.921013 GGTTT 703 0 -0.0610355 GGTTT 703 1 -0.172429 GGTTT 703 2 -0.674718 GTAAA 704 0 0.217722 GTAAA 704 1 0.414109 GTAAA 704 2 -0.150882 GTAAC 705 0 0.239651 GTAAC 705 1 -0.449984 GTAAC 705 2 0.374001 GTAAG 706 0 -0.919449 GTAAG 706 1 -0.753035 GTAAG 706 2 0.0709505 GTAAT 707 0 0.0720088 GTAAT 707 1 0.112913 GTAAT 707 2 -0.196928 GTACA 708 0 0.124648 GTACA 708 1 0.264928 GTACA 708 2 0.110111 GTACC 709 0 0.240384 GTACC 709 1 -0.760209 GTACC 709 2 0.521099 GTACG 710 0 0.280712 GTACG 710 1 -1.06128 GTACG 710 2 0.151254 GTACT 711 0 -0.471518 GTACT 711 1 0.202681 GTACT 711 2 -0.652714 GTAGA 712 0 0.674637 GTAGA 712 1 0.381536 GTAGA 712 2 0.0465215 GTAGC 713 0 0.0863304 GTAGC 713 1 0.0660289 GTAGC 713 2 0.416892 GTAGG 714 0 -0.755627 GTAGG 714 1 -0.959843 GTAGG 714 2 0.257828 GTAGT 715 0 -0.435005 GTAGT 715 1 -0.0072122 GTAGT 715 2 -0.47849 GTATA 716 0 -0.401074 GTATA 716 1 -0.313412 GTATA 716 2 0.318791 GTATC 717 0 0.770644 GTATC 717 1 0.253463 GTATC 717 2 0.369086 GTATG 718 0 -0.712063 GTATG 718 1 -0.0620945 GTATG 718 2 0.207994 GTATT 719 0 0.0570805 GTATT 719 1 0.0995398 GTATT 719 2 -0.760891 GTCAA 720 0 0.1927 GTCAA 720 1 0.402864 GTCAA 720 2 0.25282 GTCAC 721 0 0.382333 GTCAC 721 1 -1.37839 GTCAC 721 2 -0.00884154 GTCAG 722 0 -0.127306 GTCAG 722 1 0.110763 GTCAG 722 2 0.364099 GTCAT 723 0 -0.459007 GTCAT 723 1 -0.00533964 GTCAT 723 2 -0.58791 GTCCA 724 0 -0.100302 GTCCA 724 1 0.0354245 GTCCA 724 2 0.18374 GTCCC 725 0 0.513389 GTCCC 725 1 -0.50635 GTCCC 725 2 0.298152 GTCCG 726 0 0.116312 GTCCG 726 1 0.11283 GTCCG 726 2 0.257847 GTCCT 727 0 -0.242822 GTCCT 727 1 0.0960238 GTCCT 727 2 -0.56205 GTCGA 728 0 0.143506 GTCGA 728 1 -0.0581741 GTCGA 728 2 0.253463 GTCGC 729 0 -0.164048 GTCGC 729 1 -0.165939 GTCGC 729 2 -0.0954074 GTCGG 730 0 0.434626 GTCGG 730 1 -0.471858 GTCGG 730 2 0.184589 GTCGT 731 0 -0.330149 GTCGT 731 1 0.240064 GTCGT 731 2 -0.303338 GTCTA 732 0 -1.85856 GTCTA 732 1 -0.0389429 GTCTA 732 2 0.294534 GTCTC 733 0 0.517753 GTCTC 733 1 -0.133067 GTCTC 733 2 -0.153612 GTCTG 734 0 -0.197167 GTCTG 734 1 -0.0604105 GTCTG 734 2 0.544801 GTCTT 735 0 0.281135 GTCTT 735 1 0.0978142 GTCTT 735 2 -0.643903 GTGAA 736 0 0.431501 GTGAA 736 1 0.270784 GTGAA 736 2 -0.192371 GTGAC 737 0 -0.431387 GTGAC 737 1 -0.648458 GTGAC 737 2 0.122339 GTGAG 738 0 -0.743168 GTGAG 738 1 -0.334858 GTGAG 738 2 0.387446 GTGAT 739 0 0.00973483 GTGAT 739 1 0.177922 GTGAT 739 2 -0.202324 GTGCA 740 0 -0.245084 GTGCA 740 1 -0.134635 GTGCA 740 2 0.035218 GTGCC 741 0 0.437012 GTGCC 741 1 -0.360128 GTGCC 741 2 -0.5244 GTGCG 742 0 0.503632 GTGCG 742 1 -0.0444177 GTGCG 742 2 0.886587 GTGCT 743 0 -0.297271 GTGCT 743 1 0.237085 GTGCT 743 2 -0.412282 GTGGA 744 0 1.01725 GTGGA 744 1 0.436058 GTGGA 744 2 0.371313 GTGGC 745 0 -0.186366 GTGGC 745 1 -0.327695 GTGGC 745 2 -0.0589705 GTGGG 746 0 -0.331913 GTGGG 746 1 -0.368571 GTGGG 746 2 0.724138 GTGGT 747 0 -0.824854 GTGGT 747 1 0.0103258 GTGGT 747 2 -0.629636 GTGTA 748 0 -0.350814 GTGTA 748 1 -0.0866711 GTGTA 748 2 -0.836202 GTGTC 749 0 0.295471 GTGTC 749 1 -0.157707 GTGTC 749 2 0.435945 GTGTG 750 0 -0.260051 GTGTG 750 1 -0.363033 GTGTG 750 2 0.552358 GTGTT 751 0 0.217278 GTGTT 751 1 0.258544 GTGTT 751 2 -0.118417 GTTAA 752 0 0.173348 GTTAA 752 1 -4.64485 GTTAA 752 2 0.162982 GTTAC 753 0 0.0762701 GTTAC 753 1 0.427927 GTTAC 753 2 0.0822809 GTTAG 754 0 -0.140791 GTTAG 754 1 -4.18719 GTTAG 754 2 -0.015356 GTTAT 755 0 -0.156498 GTTAT 755 1 0.780289 GTTAT 755 2 -0.229904 GTTCA 756 0 -0.132033 GTTCA 756 1 0.16749 GTTCA 756 2 0.0304133 GTTCC 757 0 0.267359 GTTCC 757 1 -0.452331 GTTCC 757 2 -0.0175804 GTTCG 758 0 0.413069 GTTCG 758 1 -0.370138 GTTCG 758 2 0.659787 GTTCT 759 0 -0.297438 GTTCT 759 1 0.0983818 GTTCT 759 2 -0.706395 GTTGA 760 0 0.364541 GTTGA 760 1 -4.49465 GTTGA 760 2 0.163737 GTTGC 761 0 0.0419205 GTTGC 761 1 -0.460409 GTTGC 761 2 0.11112 GTTGG 762 0 0.151149 GTTGG 762 1 0.54289 GTTGG 762 2 0.394154 GTTGT 763 0 -0.548469 GTTGT 763 1 0.431059 GTTGT 763 2 -0.554809 GTTTA 764 0 -0.524334 GTTTA 764 1 0.279004 GTTTA 764 2 0.131633 GTTTC 765 0 0.565511 GTTTC 765 1 0.0877383 GTTTC 765 2 0.142415 GTTTG 766 0 0.0161957 GTTTG 766 1 0.023729 GTTTG 766 2 0.352088 GTTTT 767 0 -0.0578783 GTTTT 767 1 -0.339408 GTTTT 767 2 -0.53014 TAAAA 768 0 -0.193535 TAAAA 768 1 0.220075 TAAAA 768 2 -0.0264795 TAAAC 769 0 0.390776 TAAAC 769 1 -0.365686 TAAAC 769 2 0.336822 TAAAG 770 0 0.468737 TAAAG 770 1 0.0617369 TAAAG 770 2 0.542701 TAAAT 771 0 -0.394838 TAAAT 771 1 -0.0926912 TAAAT 771 2 -0.625586 TAACA 772 0 -0.36509 TAACA 772 1 -0.0156313 TAACA 772 2 0.143365 TAACC 773 0 0.66341 TAACC 773 1 0.207685 TAACC 773 2 0.453493 TAACG 774 0 0.727954 TAACG 774 1 -0.19161 TAACG 774 2 0.393845 TAACT 775 0 -0.445562 TAACT 775 1 -0.00793989 TAACT 775 2 -0.655479 TAAGA 776 0 -0.0533208 TAAGA 776 1 0.24191 TAAGA 776 2 0.285452 TAAGC 777 0 0.371562 TAAGC 777 1 0.0105466 TAAGC 777 2 0.149763 TAAGG 778 0 0.703343 TAAGG 778 1 -0.524481 TAAGG 778 2 0.653745 TAAGT 779 0 -0.565682 TAAGT 779 1 -0.0548555 TAAGT 779 2 -0.73518 TAATA 780 0 -0.123346 TAATA 780 1 -0.305669 TAATA 780 2 0.02038 TAATC 781 0 0.426932 TAATC 781 1 0.0748919 TAATC 781 2 0.178291 TAATG 782 0 0.33108 TAATG 782 1 0.310546 TAATG 782 2 0.450163 TAATT 783 0 -0.404176 TAATT 783 1 -0.00961035 TAATT 783 2 -0.466997 TACAA 784 0 0.476062 TACAA 784 1 0.352503 TACAA 784 2 0.0640165 TACAC 785 0 0.115389 TACAC 785 1 -0.388212 TACAC 785 2 0.322595 TACAG 786 0 -0.290958 TACAG 786 1 0.0461064 TACAG 786 2 0.335979 TACAT 787 0 -0.523258 TACAT 787 1 -0.250209 TACAT 787 2 -0.489929 TACCA 788 0 0.127733 TACCA 788 1 0.121135 TACCA 788 2 0.152875 TACCC 789 0 0.827455 TACCC 789 1 -0.646448 TACCC 789 2 0.42035 TACCG 790 0 0.117784 TACCG 790 1 -0.0597807 TACCG 790 2 0.166116 TACCT 791 0 -1.11769 TACCT 791 1 0.045646 TACCT 791 2 -0.632796 TACGA 792 0 0.212624 TACGA 792 1 -0.537615 TACGA 792 2 0.0117818 TACGC 793 0 -0.304957 TACGC 793 1 0.512351 TACGC 793 2 -0.000464739 TACGG 794 0 0.667885 TACGG 794 1 -1.20244 TACGG 794 2 0.741469 TACGT 795 0 -0.61533 TACGT 795 1 0.304934 TACGT 795 2 -0.574657 TACTA 796 0 -0.467354 TACTA 796 1 -0.257882 TACTA 796 2 -0.0629714 TACTC 797 0 0.278922 TACTC 797 1 -0.353965 TACTC 797 2 0.171697 TACTG 798 0 0.0476951 TACTG 798 1 0.152406 TACTG 798 2 0.509694 TACTT 799 0 0.110169 TACTT 799 1 0.171289 TACTT 799 2 -0.484737 TAGAA 800 0 -0.287681 TAGAA 800 1 0.209775 TAGAA 800 2 0.00489003 TAGAC 801 0 0.359657 TAGAC 801 1 -0.423345 TAGAC 801 2 0.219567 TAGAG 802 0 0.575364 TAGAG 802 1 0.136133 TAGAG 802 2 0.674826 TAGAT 803 0 -0.340925 TAGAT 803 1 -0.11466 TAGAT 803 2 -0.717401 TAGCA 804 0 -0.394496 TAGCA 804 1 -0.123251 TAGCA 804 2 0.0661567 TAGCC 805 0 0.704119 TAGCC 805 1 -0.331314 TAGCC 805 2 0.852174 TAGCG 806 0 0.704119 TAGCG 806 1 -0.112263 TAGCG 806 2 0.271698 TAGCT 807 0 -0.423483 TAGCT 807 1 0.213783 TAGCT 807 2 -0.923725 TAGGA 808 0 -0.205563 TAGGA 808 1 0.010967 TAGGA 808 2 0.211736 TAGGC 809 0 0.360832 TAGGC 809 1 -0.179738 TAGGC 809 2 0.0490541 TAGGG 810 0 0.360832 TAGGG 810 1 -0.782732 TAGGG 810 2 0.142144 TAGGT 811 0 -0.320337 TAGGT 811 1 0.298703 TAGGT 811 2 -0.375397 TAGTA 812 0 0.0519798 TAGTA 812 1 0.134046 TAGTA 812 2 -0.0350301 TAGTC 813 0 0.307656 TAGTC 813 1 -0.27357 TAGTC 813 2 0.120058 TAGTG 814 0 0.239192 TAGTG 814 1 -0.252086 TAGTG 814 2 0.490019 TAGTT 815 0 -0.424104 TAGTT 815 1 0.131745 TAGTT 815 2 -0.455285 TATAA 816 0 0.208042 TATAA 816 1 -4.53141 TATAA 816 2 -0.118701 TATAC 817 0 -0.0077517 TATAC 817 1 0.740701 TATAC 817 2 0.370199 TATAG 818 0 -0.0913533 TATAG 818 1 -4.02059 TATAG 818 2 0.170114 TATAT 819 0 -0.143101 TATAT 819 1 0.54242 TATAT 819 2 -0.220843 TATCA 820 0 -0.16359 TATCA 820 1 -0.0461476 TATCA 820 2 -0.00969751 TATCC 821 0 0.370604 TATCC 821 1 -0.0476721 TATCC 821 2 0.299043 TATCG 822 0 0.577868 TATCG 822 1 0.209865 TATCG 822 2 0.795555 TATCT 823 0 -0.299438 TATCT 823 1 0.000147092 TATCT 823 2 -0.655737 TATGA 824 0 0.184656 TATGA 824 1 -4.70171 TATGA 824 2 0.0352654 TATGC 825 0 0.162263 TATGC 825 1 0.347104 TATGC 825 2 0.260475 TATGG 826 0 0.460692 TATGG 826 1 0.853919 TATGG 826 2 0.652514 TATGT 827 0 -0.563915 TATGT 827 1 0.0799851 TATGT 827 2 -0.648543 TATTA 828 0 -0.184514 TATTA 828 1 0.333213 TATTA 828 2 0.0141769 TATTC 829 0 0.587031 TATTC 829 1 -0.268117 TATTC 829 2 0.355781 TATTG 830 0 -0.416127 TATTG 830 1 0.32182 TATTG 830 2 0.551874 TATTT 831 0 -0.0779791 TATTT 831 1 -0.336439 TATTT 831 2 -0.698566 TCAAA 832 0 0.319922 TCAAA 832 1 -0.00198205 TCAAA 832 2 0.0108149 TCAAC 833 0 -0.105652 TCAAC 833 1 -0.223021 TCAAC 833 2 0.0705842 TCAAG 834 0 0.0505668 TCAAG 834 1 0.638504 TCAAG 834 2 0.644582 TCAAT 835 0 -0.392496 TCAAT 835 1 -0.239589 TCAAT 835 2 -0.519847 TCACA 836 0 -0.154332 TCACA 836 1 -0.440195 TCACA 836 2 0.141304 TCACC 837 0 0.805104 TCACC 837 1 0.329323 TCACC 837 2 0.594069 TCACG 838 0 0.418121 TCACG 838 1 0.279316 TCACG 838 2 0.470033 TCACT 839 0 -0.450456 TCACT 839 1 0.0821514 TCACT 839 2 -0.661491 TCAGA 840 0 0.564204 TCAGA 840 1 0.14824 TCAGA 840 2 0.430179 TCAGC 841 0 0.315342 TCAGC 841 1 0.184527 TCAGC 841 2 0.108392 TCAGG 842 0 0.149908 TCAGG 842 1 -0.261892 TCAGG 842 2 -0.0910353 TCAGT 843 0 -0.772107 TCAGT 843 1 -0.0773357 TCAGT 843 2 -0.31942 TCATA 844 0 -0.392336 TCATA 844 1 -0.248041 TCATA 844 2 -0.104122 TCATC 845 0 0.698461 TCATC 845 1 0.216511 TCATC 845 2 0.191968 TCATG 846 0 -0.463146 TCATG 846 1 0.00864592 TCATG 846 2 0.657925 TCATT 847 0 -0.125071 TCATT 847 1 0.022924 TCATT 847 2 -0.650499 TCCAA 848 0 0.408394 TCCAA 848 1 0.0199426 TCCAA 848 2 -0.00774984 TCCAC 849 0 -0.307333 TCCAC 849 1 -0.165821 TCCAC 849 2 -0.217947 TCCAG 850 0 -0.123316 TCCAG 850 1 0.267144 TCCAG 850 2 0.40226 TCCAT 851 0 -0.257871 TCCAT 851 1 -0.133106 TCCAT 851 2 -0.220847 TCCCA 852 0 0.198565 TCCCA 852 1 -0.0465439 TCCCA 852 2 0.206729 TCCCC 853 0 -0.116019 TCCCC 853 1 -0.692904 TCCCC 853 2 -0.407317 TCCCG 854 0 -0.284638 TCCCG 854 1 -0.192477 TCCCG 854 2 0.426373 TCCCT 855 0 -0.00945478 TCCCT 855 1 0.363346 TCCCT 855 2 -0.340283 TCCGA 856 0 0.280898 TCCGA 856 1 0.229755 TCCGA 856 2 0.218825 TCCGC 857 0 0.255194 TCCGC 857 1 0.442866 TCCGC 857 2 -0.461703 TCCGG 858 0 0.580613 TCCGG 858 1 -0.368795 TCCGG 858 2 1.02117 TCCGT 859 0 -0.687988 TCCGT 859 1 -0.314973 TCCGT 859 2 -0.636057 TCCTA 860 0 -0.360568 TCCTA 860 1 -0.28631 TCCTA 860 2 -0.107285 TCCTC 861 0 0.23414 TCCTC 861 1 0.308399 TCCTC 861 2 0.273272 TCCTG 862 0 -0.301382 TCCTG 862 1 0.00308025 TCCTG 862 2 0.564552 TCCTT 863 0 0.259705 TCCTT 863 1 0.0418123 TCCTT 863 2 -0.729599 TCGAA 864 0 0.512783 TCGAA 864 1 0.107049 TCGAA 864 2 0.289499 TCGAC 865 0 -0.226169 TCGAC 865 1 -0.379661 TCGAC 865 2 -0.114491 TCGAG 866 0 -0.344805 TCGAG 866 1 -0.233321 TCGAG 866 2 0.390062 TCGAT 867 0 -0.332081 TCGAT 867 1 0.195361 TCGAT 867 2 -0.509722 TCGCA 868 0 -0.124124 TCGCA 868 1 0.025099 TCGCA 868 2 0.478606 TCGCC 869 0 0.320281 TCGCC 869 1 -0.220932 TCGCC 869 2 -0.236583 TCGCG 870 0 0.0967062 TCGCG 870 1 -0.326294 TCGCG 870 2 0.762483 TCGCT 871 0 -0.161993 TCGCT 871 1 0.159211 TCGCT 871 2 -1.20726 TCGGA 872 0 0.458537 TCGGA 872 1 0.0650261 TCGGA 872 2 0.24533 TCGGC 873 0 0.107005 TCGGC 873 1 -0.639703 TCGGC 873 2 0.124706 TCGGG 874 0 -0.0997868 TCGGG 874 1 -0.451182 TCGGG 874 2 0.113656 TCGGT 875 0 -0.597196 TCGGT 875 1 0.326151 TCGGT 875 2 -0.415866 TCGTA 876 0 -1.12646 TCGTA 876 1 -0.238922 TCGTA 876 2 0.0372392 TCGTC 877 0 0.665568 TCGTC 877 1 0.397118 TCGTC 877 2 0.186198 TCGTG 878 0 -0.263184 TCGTG 878 1 -0.226269 TCGTG 878 2 0.522415 TCGTT 879 0 0.143132 TCGTT 879 1 0.0143098 TCGTT 879 2 -0.707092 TCTAA 880 0 0.118906 TCTAA 880 1 -3.80658 TCTAA 880 2 0.0968164 TCTAC 881 0 0.130018 TCTAC 881 1 -0.214417 TCTAC 881 2 0.408067 TCTAG 882 0 0.161764 TCTAG 882 1 -3.22719 TCTAG 882 2 0.439812 TCTAT 883 0 -0.30791 TCTAT 883 1 0.881447 TCTAT 883 2 -0.943154 TCTCA 884 0 -0.28538 TCTCA 884 1 0.158056 TCTCA 884 2 0.0887952 TCTCC 885 0 0.00236018 TCTCC 885 1 -0.589155 TCTCC 885 2 0.124659 TCTCG 886 0 0.68033 TCTCG 886 1 0.290096 TCTCG 886 2 0.454259 TCTCT 887 0 -0.130366 TCTCT 887 1 -0.116551 TCTCT 887 2 -0.626659 TCTGA 888 0 0.338024 TCTGA 888 1 -3.95261 TCTGA 888 2 0.30462 TCTGC 889 0 0.0250011 TCTGC 889 1 0.419368 TCTGC 889 2 0.0226379 TCTGG 890 0 0.468981 TCTGG 890 1 0.545347 TCTGG 890 2 0.625142 TCTGT 891 0 -0.562335 TCTGT 891 1 0.154809 TCTGT 891 2 -0.669367 TCTTA 892 0 -0.451731 TCTTA 892 1 -0.533446 TCTTA 892 2 -0.213127 TCTTC 893 0 0.604575 TCTTC 893 1 0.224284 TCTTC 893 2 0.312919 TCTTG 894 0 -0.247857 TCTTG 894 1 0.344084 TCTTG 894 2 0.730727 TCTTT 895 0 -0.0352672 TCTTT 895 1 0.0159131 TCTTT 895 2 -0.751016 TGAAA 896 0 -0.24601 TGAAA 896 1 0.213358 TGAAA 896 2 -0.0389825 TGAAC 897 0 0.405463 TGAAC 897 1 -0.355783 TGAAC 897 2 0.186869 TGAAG 898 0 0.34604 TGAAG 898 1 0.17556 TGAAG 898 2 0.511151 TGAAT 899 0 -0.297835 TGAAT 899 1 -0.196558 TGAAT 899 2 -0.537596 TGACA 900 0 -0.192371 TGACA 900 1 0.291787 TGACA 900 2 0.182036 TGACC 901 0 0.541594 TGACC 901 1 -0.481032 TGACC 901 2 0.286996 TGACG 902 0 0.69923 TGACG 902 1 -0.0666775 TGACG 902 2 0.535091 TGACT 903 0 -0.535962 TGACT 903 1 -0.0960107 TGACT 903 2 -0.617151 TGAGA 904 0 -0.207638 TGAGA 904 1 -0.178651 TGAGA 904 2 -0.168925 TGAGC 905 0 0.485509 TGAGC 905 1 0.349171 TGAGC 905 2 0.00492138 TGAGG 906 0 0.612261 TGAGG 906 1 0.161677 TGAGG 906 2 0.978974 TGAGT 907 0 -0.477302 TGAGT 907 1 -0.0983287 TGAGT 907 2 -0.583636 TGATA 908 0 -0.165965 TGATA 908 1 -0.278328 TGATA 908 2 -0.205971 TGATC 909 0 0.475356 TGATC 909 1 -0.462914 TGATC 909 2 0.137676 TGATG 910 0 0.234194 TGATG 910 1 0.224487 TGATG 910 2 0.669868 TGATT 911 0 -0.34117 TGATT 911 1 0.203846 TGATT 911 2 -0.589903 TGCAA 912 0 0.039184 TGCAA 912 1 0.356042 TGCAA 912 2 -0.262571 TGCAC 913 0 0.214425 TGCAC 913 1 -0.153501 TGCAC 913 2 0.299248 TGCAG 914 0 0.112115 TGCAG 914 1 -0.0185708 TGCAG 914 2 0.543364 TGCAT 915 0 -0.21679 TGCAT 915 1 -0.341076 TGCAT 915 2 -0.347007 TGCCA 916 0 -0.975603 TGCCA 916 1 0.190452 TGCCA 916 2 -0.215524 TGCCC 917 0 0.272939 TGCCC 917 1 -1.40024 TGCCC 917 2 0.258258 TGCCG 918 0 0.609414 TGCCG 918 1 0.414343 TGCCG 918 2 0.485032 TGCCT 919 0 0.253354 TGCCT 919 1 -0.0644752 TGCCT 919 2 -0.116434 TGCGA 920 0 0.345172 TGCGA 920 1 0.146373 TGCGA 920 2 0.237798 TGCGC 921 0 -0.405131 TGCGC 921 1 0.275329 TGCGC 921 2 -0.182146 TGCGG 922 0 0.592847 TGCGG 922 1 0.018956 TGCGG 922 2 0.551176 TGCGT 923 0 -0.644005 TGCGT 923 1 -0.256114 TGCGT 923 2 -0.507429 TGCTA 924 0 -0.449337 TGCTA 924 1 -0.433937 TGCTA 924 2 -0.104776 TGCTC 925 0 0.552921 TGCTC 925 1 -0.311587 TGCTC 925 2 0.354104 TGCTG 926 0 0.0887881 TGCTG 926 1 0.31657 TGCTG 926 2 0.545702 TGCTT 927 0 -0.0678294 TGCTT 927 1 0.128431 TGCTT 927 2 -0.613093 TGGAA 928 0 0.260319 TGGAA 928 1 -0.142622 TGGAA 928 2 -0.144407 TGGAC 929 0 -0.15742 TGGAC 929 1 -0.395981 TGGAC 929 2 -0.0828874 TGGAG 930 0 0.216209 TGGAG 930 1 0.149463 TGGAG 930 2 0.629901 TGGAT 931 0 -0.41367 TGGAT 931 1 0.213598 TGGAT 931 2 -0.238475 TGGCA 932 0 0.193092 TGGCA 932 1 -0.0136065 TGGCA 932 2 0.0819751 TGGCC 933 0 0.0626129 TGGCC 933 1 0.00778131 TGGCC 933 2 0.385899 TGGCG 934 0 -0.157827 TGGCG 934 1 -0.270342 TGGCG 934 2 0.483712 TGGCT 935 0 -0.158657 TGGCT 935 1 0.101797 TGGCT 935 2 -0.704995 TGGGA 936 0 0.610409 TGGGA 936 1 -0.122296 TGGGA 936 2 0.394234 TGGGC 937 0 -0.184181 TGGGC 937 1 -0.156377 TGGGC 937 2 -0.719927 TGGGG 938 0 0.01118 TGGGG 938 1 0.0340493 TGGGG 938 2 0.637866 TGGGT 939 0 -0.877326 TGGGT 939 1 0.137869 TGGGT 939 2 -0.732193 TGGTA 940 0 -0.390902 TGGTA 940 1 -0.0995469 TGGTA 940 2 -0.374842 TGGTC 941 0 0.48797 TGGTC 941 1 -0.337335 TGGTC 941 2 0.388049 TGGTG 942 0 -0.861443 TGGTG 942 1 0.10947 TGGTG 942 2 0.687236 TGGTT 943 0 0.299261 TGGTT 943 1 0.0916785 TGGTT 943 2 -0.629822 TGTAA 944 0 0.247508 TGTAA 944 1 -4.42422 TGTAA 944 2 0.179335 TGTAC 945 0 0.101662 TGTAC 945 1 0.256805 TGTAC 945 2 0.13802 TGTAG 946 0 -0.404181 TGTAG 946 1 -4.22861 TGTAG 946 2 0.0715628 TGTAT 947 0 -0.0589668 TGTAT 947 1 0.79572 TGTAT 947 2 -0.308902 TGTCA 948 0 -0.362563 TGTCA 948 1 0.0530752 TGTCA 948 2 -0.183603 TGTCC 949 0 0.646365 TGTCC 949 1 -0.122402 TGTCC 949 2 0.445318 TGTCG 950 0 0.5815 TGTCG 950 1 0.163106 TGTCG 950 2 0.77202 TGTCT 951 0 -0.397351 TGTCT 951 1 -0.0896574 TGTCT 951 2 -0.675137 TGTGA 952 0 0.22293 TGTGA 952 1 -4.39237 TGTGA 952 2 0.19659 TGTGC 953 0 0.223753 TGTGC 953 1 0.216319 TGTGC 953 2 -0.366695 TGTGG 954 0 0.423899 TGTGG 954 1 0.581902 TGTGG 954 2 0.671601 TGTGT 955 0 -0.723228 TGTGT 955 1 0.266714 TGTGT 955 2 -0.568083 TGTTA 956 0 -0.765379 TGTTA 956 1 0.0376275 TGTTA 956 2 0.123617 TGTTC 957 0 0.732458 TGTTC 957 1 -0.0724736 TGTTC 957 2 0.197642 TGTTG 958 0 -0.0413667 TGTTG 958 1 0.358867 TGTTG 958 2 0.593261 TGTTT 959 0 -0.0254271 TGTTT 959 1 -0.216487 TGTTT 959 2 -0.737378 TTAAA 960 0 0.156863 TTAAA 960 1 0.237121 TTAAA 960 2 -0.267376 TTAAC 961 0 0.0356371 TTAAC 961 1 -0.380168 TTAAC 961 2 0.374787 TTAAG 962 0 -0.0927002 TTAAG 962 1 -0.124671 TTAAG 962 2 0.603797 TTAAT 963 0 -0.146154 TTAAT 963 1 -0.0478104 TTAAT 963 2 -0.377954 TTACA 964 0 -0.0245394 TTACA 964 1 0.230562 TTACA 964 2 0.250919 TTACC 965 0 0.35185 TTACC 965 1 -0.19157 TTACC 965 2 -0.201587 TTACG 966 0 0.461453 TTACG 966 1 -0.486198 TTACG 966 2 0.752614 TTACT 967 0 -0.380097 TTACT 967 1 -0.0172597 TTACT 967 2 -0.582686 TTAGA 968 0 0.458933 TTAGA 968 1 0.185347 TTAGA 968 2 0.0707444 TTAGC 969 0 0.335451 TTAGC 969 1 0.238336 TTAGC 969 2 0.417803 TTAGG 970 0 0.140145 TTAGG 970 1 0.0194535 TTAGG 970 2 0.61729 TTAGT 971 0 -0.642093 TTAGT 971 1 -0.225463 TTAGT 971 2 -0.626154 TTATA 972 0 -0.772293 TTATA 972 1 -0.285736 TTATA 972 2 -0.0219103 TTATC 973 0 0.574838 TTATC 973 1 0.0863118 TTATC 973 2 0.136709 TTATG 974 0 -0.210591 TTATG 974 1 0.480834 TTATG 974 2 0.506458 TTATT 975 0 0.0808804 TTATT 975 1 -0.16502 TTATT 975 2 -0.410371 TTCAA 976 0 0.534625 TTCAA 976 1 0.442825 TTCAA 976 2 0.254747 TTCAC 977 0 0.00629778 TTCAC 977 1 -0.478826 TTCAC 977 2 0.0236596 TTCAG 978 0 -0.175589 TTCAG 978 1 -0.0873893 TTCAG 978 2 0.180762 TTCAT 979 0 -0.484271 TTCAT 979 1 -0.136781 TTCAT 979 2 -0.392971 TTCCA 980 0 0.040236 TTCCA 980 1 0.132031 TTCCA 980 2 0.0885549 TTCCC 981 0 0.276952 TTCCC 981 1 -0.206106 TTCCC 981 2 -0.147091 TTCCG 982 0 0.379575 TTCCG 982 1 -0.0552802 TTCCG 982 2 0.724791 TTCCT 983 0 -0.432554 TTCCT 983 1 -0.046881 TTCCT 983 2 -0.5645 TTCGA 984 0 0.444959 TTCGA 984 1 0.038499 TTCGA 984 2 0.335573 TTCGC 985 0 0.0586132 TTCGC 985 1 -0.137195 TTCGC 985 2 -0.290691 TTCGG 986 0 0.25146 TTCGG 986 1 -0.941597 TTCGG 986 2 0.594634 TTCGT 987 0 -0.716917 TTCGT 987 1 0.253388 TTCGT 987 2 -0.711099 TTCTA 988 0 -0.634263 TTCTA 988 1 -0.0988297 TTCTA 988 2 -0.15136 TTCTC 989 0 0.329994 TTCTC 989 1 -0.50174 TTCTC 989 2 -0.0960429 TTCTG 990 0 -0.0550609 TTCTG 990 1 0.00943017 TTCTG 990 2 0.663532 TTCTT 991 0 0.230603 TTCTT 991 1 0.257009 TTCTT 991 2 -0.376089 TTGAA 992 0 0.349169 TTGAA 992 1 0.205674 TTGAA 992 2 -0.184396 TTGAC 993 0 -0.183984 TTGAC 993 1 -0.19213 TTGAC 993 2 0.386946 TTGAG 994 0 -0.0144229 TTGAG 994 1 -0.0225693 TTGAG 994 2 0.556507 TTGAT 995 0 -0.282414 TTGAT 995 1 -0.0971755 TTGAT 995 2 -0.435135 TTGCA 996 0 -0.11286 TTGCA 996 1 -0.0715623 TTGCA 996 2 0.0979005 TTGCC 997 0 0.514766 TTGCC 997 1 -0.336244 TTGCC 997 2 0.062214 TTGCG 998 0 0.357267 TTGCG 998 1 -0.344377 TTGCG 998 2 0.789398 TTGCT 999 0 -0.32837 TTGCT 999 1 0.224976 TTGCT 999 2 -0.645176 TTGGA 1000 0 0.266111 TTGGA 1000 1 -0.186293 TTGGA 1000 2 0.2176 TTGGC 1001 0 0.504332 TTGGC 1001 1 0.00354372 TTGGC 1001 2 -0.227023 TTGGG 1002 0 0.106787 TTGGG 1002 1 0.115956 TTGGG 1002 2 0.672811 TTGGT 1003 0 -0.696889 TTGGT 1003 1 0.076832 TTGGT 1003 2 -0.495763 TTGTA 1004 0 -0.708196 TTGTA 1004 1 -0.342891 TTGTA 1004 2 -0.205389 TTGTC 1005 0 0.566481 TTGTC 1005 1 0.214911 TTGTC 1005 2 0.467849 TTGTG 1006 0 -0.151324 TTGTG 1006 1 -0.212812 TTGTG 1006 2 0.438593 TTGTT 1007 0 0.158681 TTGTT 1007 1 0.221285 TTGTT 1007 2 -0.530715 TTTAA 1008 0 0.348543 TTTAA 1008 1 -4.88406 TTTAA 1008 2 0.130624 TTTAC 1009 0 -0.0854832 TTTAC 1009 1 0.511159 TTTAC 1009 2 0.0874425 TTTAG 1010 0 -0.210815 TTTAG 1010 1 -4.54242 TTTAG 1010 2 0.340309 TTTAT 1011 0 -0.168417 TTTAT 1011 1 0.611481 TTTAT 1011 2 -0.423225 TTTCA 1012 0 -0.286647 TTTCA 1012 1 -0.146669 TTTCA 1012 2 -0.11333 TTTCC 1013 0 0.446285 TTTCC 1013 1 -0.208283 TTTCC 1013 2 0.351777 TTTCG 1014 0 0.464099 TTTCG 1014 1 -0.168382 TTTCG 1014 2 0.502384 TTTCT 1015 0 -0.211824 TTTCT 1015 1 0.265606 TTTCT 1015 2 -0.386905 TTTGA 1016 0 0.336636 TTTGA 1016 1 -4.78578 TTTGA 1016 2 0.110867 TTTGC 1017 0 0.0671419 TTTGC 1017 1 0.465054 TTTGC 1017 2 0.109245 TTTGG 1018 0 0.371323 TTTGG 1018 1 0.819036 TTTGG 1018 2 0.805863 TTTGT 1019 0 -0.54455 TTTGT 1019 1 -0.0301895 TTTGT 1019 2 -0.738411 TTTTA 1020 0 -0.632932 TTTTA 1020 1 0.205555 TTTTA 1020 2 -0.118854 TTTTC 1021 0 0.278967 TTTTC 1021 1 -0.0552045 TTTTC 1021 2 0.142801 TTTTG 1022 0 -0.163708 TTTTG 1022 1 0.131856 TTTTG 1022 2 0.511711 TTTTT 1023 0 0.252827 TTTTT 1023 1 -0.265247 TTTTT 1023 2 -0.416809 # Donors per acceptor to build exons maximum_number_of_donors_per_acceptor_site 5 # GENE MODEL: Rules about gene assembling (GenAmic) General_Gene_Model # INTRAgenic connections First+:Internal+ Internal+:Terminal+ 25:10000 block Terminal-:Internal- First-:Internal- 25:10000 blockr # External features Promoter+ First+:Single+ 50:4000 Terminal+:Single+ aataaa+ 50:4000 First-:Single- Promoter- 50:4000 aataaa- Single-:Terminal- 50:4000 # INTERgenic conections aataaa+:Terminal+:Single+ Single+:First+:Promoter+ 300:Infinity aataaa+:Terminal+:Single+ Single-:Terminal-:aataaa- 300:Infinity Promoter-:First-:Single- Single+:First+:Promoter+ 300:Infinity Promoter-:First-:Single- Single-:Terminal-:aataaa- 300:Infinity # BEGINNING and END of prediction Begin+ First+:Internal+:Terminal+:Single+ 0:Infinity Begin- First-:Internal-:Terminal-:Single- 0:Infinity First+:Internal+:Terminal+:Single+ End+ 0:Infinity First-:Internal-:Terminal-:Single- End- 0:Infinity