ReadSR.c | geneid v 1.1 source documentation |
Description: |
Similarity regions (SRs) are projections of blast High-scoring Segment Pairs
over the input sequence (saving for every basepair the score of the better
HSP), depending on the frame. By using these homologous regions to the input
DNA sequence, exons overlapping the SRs will be enhancered and better
predictions will be obtained.
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Briefing: |
long ReadSR (char* FileName, packSR* sr, long LengthSequence) |
To place every SR into the correct array according to their blast frame
(1,2,3) and strand. If frame is unknown (blastn), then 3 copies of the same
SR will be produced. (It is not necessary a previous sorting
in the SR file)
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Enrique Blanco Garcia © 2001