#!/bin/bash

#$ -q mem_256
#$ -N CEGMA
#$ -e /users/rg/fcamara/Research/geneid_training/P.cucumerina/data/set1/errCEGMA.log
#$ -o /users/rg/fcamara/Research/geneid_training/P.cucumerina/data/set1/outCEGMA.log
#$ -pe smp 24
#$ -l virtual_free=100G
#$ -l h_rt=12:00:00

cd /users/rg/fcamara/Research/geneid_training/P.cucumerina/data/set1/assembly;

cegma -T=24 -p 248.prots.fa -v --ext --tmp --genome Pcucumerina.fasta -o PcucumerinaCegma

