##gff-version 3
# date Wed Apr 30 10:51:26 2014
# source-version: sgp2 -- geneid@crg.es
##sequence-region chr7_KI270899v1_alt 1 190869
# Optimal Gene Structure. 2 genes. Score = 109.40 
# Gene 1 (Reverse). 5 exons. 684 aa. Score = 30.59 
chr7_KI270899v1_alt	sgp2	gene	10509	59061	30.59	-	.	ID=chr7_KI270899v1_alt_1;Name=chr7_KI270899v1_alt_1
chr7_KI270899v1_alt	sgp2	mRNA	10509	59061	30.59	-	.	ID=mRNA_chr7_KI270899v1_alt_1;Parent=chr7_KI270899v1_alt_1
chr7_KI270899v1_alt	sgp2	CDS	10509	11484	19.17	-	1	ID=cds_chr7_KI270899v1_alt_1;Parent=mRNA_chr7_KI270899v1_alt_1;Target=sgp2_predicted_protein_chr7_KI270899v1_alt_1 359 684;3_prime_partial=true;exon_type=Internal;acceptor_score=-1.55;donor_score=-0.78;coding_potential=19.02;homology_score=48.05
chr7_KI270899v1_alt	sgp2	exon	10509	11484	19.17	-	.	ID=exon_chr7_KI270899v1_alt_1.5;Parent=mRNA_chr7_KI270899v1_alt_1;3_prime_partial=true;acceptor_score=-1.55;donor_score=-0.78;homology_score=48.05
chr7_KI270899v1_alt	sgp2	CDS	12434	13250	8.97	-	2	ID=cds_chr7_KI270899v1_alt_1;Parent=mRNA_chr7_KI270899v1_alt_1;Target=sgp2_predicted_protein_chr7_KI270899v1_alt_1 87 359;exon_type=Internal;acceptor_score=0.08;donor_score=-0.78;coding_potential=13.99;homology_score=17.70
chr7_KI270899v1_alt	sgp2	exon	12434	13250	8.97	-	.	ID=exon_chr7_KI270899v1_alt_1.4;Parent=mRNA_chr7_KI270899v1_alt_1;acceptor_score=0.08;donor_score=-0.78;homology_score=17.70
chr7_KI270899v1_alt	sgp2	CDS	13595	13790	1.14	-	0	ID=cds_chr7_KI270899v1_alt_1;Parent=mRNA_chr7_KI270899v1_alt_1;Target=sgp2_predicted_protein_chr7_KI270899v1_alt_1 22 87;exon_type=Internal;acceptor_score=1.71;donor_score=4.10;coding_potential=13.02;homology_score=-68.55
chr7_KI270899v1_alt	sgp2	exon	13595	13790	1.14	-	.	ID=exon_chr7_KI270899v1_alt_1.3;Parent=mRNA_chr7_KI270899v1_alt_1;acceptor_score=1.71;donor_score=4.10;homology_score=-68.55
chr7_KI270899v1_alt	sgp2	CDS	46624	46663	3.42	-	1	ID=cds_chr7_KI270899v1_alt_1;Parent=mRNA_chr7_KI270899v1_alt_1;Target=sgp2_predicted_protein_chr7_KI270899v1_alt_1 8 21;exon_type=Internal;acceptor_score=5.50;donor_score=4.39;coding_potential=2.23;homology_score=-13.71
chr7_KI270899v1_alt	sgp2	exon	46624	46663	3.42	-	.	ID=exon_chr7_KI270899v1_alt_1.2;Parent=mRNA_chr7_KI270899v1_alt_1;acceptor_score=5.50;donor_score=4.39;homology_score=-13.71
chr7_KI270899v1_alt	sgp2	CDS	59039	59061	-2.11	-	0	ID=cds_chr7_KI270899v1_alt_1;Parent=mRNA_chr7_KI270899v1_alt_1;Target=sgp2_predicted_protein_chr7_KI270899v1_alt_1 1 8;exon_type=First;start_score=0.68;donor_score=1.14;coding_potential=5.18;homology_score=-7.73
chr7_KI270899v1_alt	sgp2	exon	59039	59061	-2.11	-	.	ID=exon_chr7_KI270899v1_alt_1.1;Parent=mRNA_chr7_KI270899v1_alt_1;donor_score=1.14;homology_score=-7.73
###
# Gene 2 (Forward). 3 exons. 145 aa. Score = 78.81 
chr7_KI270899v1_alt	sgp2	gene	185521	188053	78.81	+	.	ID=chr7_KI270899v1_alt_2;Name=chr7_KI270899v1_alt_2
chr7_KI270899v1_alt	sgp2	mRNA	185521	188053	78.81	+	.	ID=mRNA_chr7_KI270899v1_alt_2;Parent=chr7_KI270899v1_alt_2
chr7_KI270899v1_alt	sgp2	CDS	185521	185660	25.52	+	0	ID=cds_chr7_KI270899v1_alt_2;Parent=mRNA_chr7_KI270899v1_alt_2;Target=sgp2_predicted_protein_chr7_KI270899v1_alt_2 1 47;exon_type=First;start_score=3.63;donor_score=0.28;coding_potential=20.01;homology_score=14.12
chr7_KI270899v1_alt	sgp2	exon	185521	185660	25.52	+	.	ID=exon_chr7_KI270899v1_alt_2.1;Parent=mRNA_chr7_KI270899v1_alt_2;donor_score=0.28;homology_score=14.12
chr7_KI270899v1_alt	sgp2	CDS	186009	186125	15.94	+	1	ID=cds_chr7_KI270899v1_alt_2;Parent=mRNA_chr7_KI270899v1_alt_2;Target=sgp2_predicted_protein_chr7_KI270899v1_alt_2 47 86;exon_type=Internal;acceptor_score=-0.26;donor_score=3.28;coding_potential=15.04;homology_score=11.78
chr7_KI270899v1_alt	sgp2	exon	186009	186125	15.94	+	.	ID=exon_chr7_KI270899v1_alt_2.2;Parent=mRNA_chr7_KI270899v1_alt_2;acceptor_score=-0.26;donor_score=3.28;homology_score=11.78
chr7_KI270899v1_alt	sgp2	CDS	187875	188053	37.35	+	1	ID=cds_chr7_KI270899v1_alt_2;Parent=mRNA_chr7_KI270899v1_alt_2;Target=sgp2_predicted_protein_chr7_KI270899v1_alt_2 86 145;3_prime_partial=true;exon_type=Internal;acceptor_score=4.59;donor_score=3.19;coding_potential=24.35;homology_score=19.47
chr7_KI270899v1_alt	sgp2	exon	187875	188053	37.35	+	.	ID=exon_chr7_KI270899v1_alt_2.3;Parent=mRNA_chr7_KI270899v1_alt_2;3_prime_partial=true;acceptor_score=4.59;donor_score=3.19;homology_score=19.47
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