##gff-version 3 # date Wed Apr 30 10:50:55 2014 # source-version: sgp2 -- geneid@crg.es ##sequence-region chr19_KI270923v1_alt 1 189352 # Optimal Gene Structure. 4 genes. Score = 330.48 # Gene 1 (Forward). 9 exons. 699 aa. Score = 90.40 chr19_KI270923v1_alt sgp2 gene 547 43182 90.40 + . ID=chr19_KI270923v1_alt_1;Name=chr19_KI270923v1_alt_1 chr19_KI270923v1_alt sgp2 mRNA 547 43182 90.40 + . ID=mRNA_chr19_KI270923v1_alt_1;Parent=chr19_KI270923v1_alt_1 chr19_KI270923v1_alt sgp2 CDS 547 843 20.59 + 2 ID=cds_chr19_KI270923v1_alt_1;Parent=mRNA_chr19_KI270923v1_alt_1;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_1 1 100;5_prime_partial=true;exon_type=Internal;acceptor_score=5.12;donor_score=3.65;coding_potential=11.02;homology_score=19.42 chr19_KI270923v1_alt sgp2 exon 547 843 20.59 + . ID=exon_chr19_KI270923v1_alt_1.1;Parent=mRNA_chr19_KI270923v1_alt_1;5_prime_partial=true;acceptor_score=5.12;donor_score=3.65;homology_score=19.42 chr19_KI270923v1_alt sgp2 CDS 1097 1399 15.22 + 2 ID=cds_chr19_KI270923v1_alt_1;Parent=mRNA_chr19_KI270923v1_alt_1;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_1 100 201;exon_type=Internal;acceptor_score=5.53;donor_score=3.99;coding_potential=6.65;homology_score=16.76 chr19_KI270923v1_alt sgp2 exon 1097 1399 15.22 + . ID=exon_chr19_KI270923v1_alt_1.2;Parent=mRNA_chr19_KI270923v1_alt_1;acceptor_score=5.53;donor_score=3.99;homology_score=16.76 chr19_KI270923v1_alt sgp2 CDS 17010 17294 6.77 + 2 ID=cds_chr19_KI270923v1_alt_1;Parent=mRNA_chr19_KI270923v1_alt_1;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_1 201 296;exon_type=Internal;acceptor_score=4.20;donor_score=1.37;coding_potential=4.12;homology_score=24.63 chr19_KI270923v1_alt sgp2 exon 17010 17294 6.77 + . ID=exon_chr19_KI270923v1_alt_1.3;Parent=mRNA_chr19_KI270923v1_alt_1;acceptor_score=4.20;donor_score=1.37;homology_score=24.63 chr19_KI270923v1_alt sgp2 CDS 18604 18867 17.95 + 2 ID=cds_chr19_KI270923v1_alt_1;Parent=mRNA_chr19_KI270923v1_alt_1;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_1 296 384;exon_type=Internal;acceptor_score=3.26;donor_score=3.31;coding_potential=12.70;homology_score=13.61 chr19_KI270923v1_alt sgp2 exon 18604 18867 17.95 + . ID=exon_chr19_KI270923v1_alt_1.4;Parent=mRNA_chr19_KI270923v1_alt_1;acceptor_score=3.26;donor_score=3.31;homology_score=13.61 chr19_KI270923v1_alt sgp2 CDS 20450 20743 2.88 + 2 ID=cds_chr19_KI270923v1_alt_1;Parent=mRNA_chr19_KI270923v1_alt_1;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_1 384 482;exon_type=Internal;acceptor_score=5.25;donor_score=3.89;coding_potential=1.20;homology_score=-3.25 chr19_KI270923v1_alt sgp2 exon 20450 20743 2.88 + . ID=exon_chr19_KI270923v1_alt_1.5;Parent=mRNA_chr19_KI270923v1_alt_1;acceptor_score=5.25;donor_score=3.89;homology_score=-3.25 chr19_KI270923v1_alt sgp2 CDS 32861 33124 16.98 + 2 ID=cds_chr19_KI270923v1_alt_1;Parent=mRNA_chr19_KI270923v1_alt_1;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_1 482 570;exon_type=Internal;acceptor_score=3.26;donor_score=3.67;coding_potential=11.81;homology_score=12.07 chr19_KI270923v1_alt sgp2 exon 32861 33124 16.98 + . ID=exon_chr19_KI270923v1_alt_1.6;Parent=mRNA_chr19_KI270923v1_alt_1;acceptor_score=3.26;donor_score=3.67;homology_score=12.07 chr19_KI270923v1_alt sgp2 CDS 34643 34936 11.93 + 2 ID=cds_chr19_KI270923v1_alt_1;Parent=mRNA_chr19_KI270923v1_alt_1;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_1 570 668;exon_type=Internal;acceptor_score=5.40;donor_score=3.65;coding_potential=5.67;homology_score=12.85 chr19_KI270923v1_alt sgp2 exon 34643 34936 11.93 + . ID=exon_chr19_KI270923v1_alt_1.7;Parent=mRNA_chr19_KI270923v1_alt_1;acceptor_score=5.40;donor_score=3.65;homology_score=12.85 chr19_KI270923v1_alt sgp2 CDS 42990 43042 2.76 + 2 ID=cds_chr19_KI270923v1_alt_1;Parent=mRNA_chr19_KI270923v1_alt_1;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_1 668 685;exon_type=Internal;acceptor_score=4.79;donor_score=4.30;coding_potential=3.24;homology_score=-18.18 chr19_KI270923v1_alt sgp2 exon 42990 43042 2.76 + . ID=exon_chr19_KI270923v1_alt_1.8;Parent=mRNA_chr19_KI270923v1_alt_1;acceptor_score=4.79;donor_score=4.30;homology_score=-18.18 chr19_KI270923v1_alt sgp2 CDS 43141 43182 -4.66 + 0 ID=cds_chr19_KI270923v1_alt_1;Parent=mRNA_chr19_KI270923v1_alt_1;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_1 686 699;exon_type=Terminal;acceptor_score=3.68;coding_potential=3.13;homology_score=-13.29 chr19_KI270923v1_alt sgp2 exon 43141 43182 -4.66 + . ID=exon_chr19_KI270923v1_alt_1.9;Parent=mRNA_chr19_KI270923v1_alt_1;acceptor_score=3.68;homology_score=-13.29 ### # Gene 2 (Forward). 12 exons. 974 aa. Score = 122.67 chr19_KI270923v1_alt sgp2 gene 45710 102676 122.67 + . ID=chr19_KI270923v1_alt_2;Name=chr19_KI270923v1_alt_2 chr19_KI270923v1_alt sgp2 mRNA 45710 102676 122.67 + . ID=mRNA_chr19_KI270923v1_alt_2;Parent=chr19_KI270923v1_alt_2 chr19_KI270923v1_alt sgp2 CDS 45710 45743 3.00 + 0 ID=cds_chr19_KI270923v1_alt_2;Parent=mRNA_chr19_KI270923v1_alt_2;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_2 1 12;exon_type=First;start_score=4.35;donor_score=3.45;coding_potential=3.19;homology_score=-11.54 chr19_KI270923v1_alt sgp2 exon 45710 45743 3.00 + . ID=exon_chr19_KI270923v1_alt_2.1;Parent=mRNA_chr19_KI270923v1_alt_2;donor_score=3.45;homology_score=-11.54 chr19_KI270923v1_alt sgp2 CDS 49160 49423 20.22 + 2 ID=cds_chr19_KI270923v1_alt_2;Parent=mRNA_chr19_KI270923v1_alt_2;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_2 12 100;exon_type=Internal;acceptor_score=3.26;donor_score=3.67;coding_potential=14.18;homology_score=12.07 chr19_KI270923v1_alt sgp2 exon 49160 49423 20.22 + . ID=exon_chr19_KI270923v1_alt_2.2;Parent=mRNA_chr19_KI270923v1_alt_2;acceptor_score=3.26;donor_score=3.67;homology_score=12.07 chr19_KI270923v1_alt sgp2 CDS 50938 51231 10.39 + 2 ID=cds_chr19_KI270923v1_alt_2;Parent=mRNA_chr19_KI270923v1_alt_2;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_2 100 198;exon_type=Internal;acceptor_score=5.40;donor_score=3.65;coding_potential=5.96;homology_score=2.66 chr19_KI270923v1_alt sgp2 exon 50938 51231 10.39 + . ID=exon_chr19_KI270923v1_alt_2.3;Parent=mRNA_chr19_KI270923v1_alt_2;acceptor_score=5.40;donor_score=3.65;homology_score=2.66 chr19_KI270923v1_alt sgp2 CDS 63829 64113 7.64 + 2 ID=cds_chr19_KI270923v1_alt_2;Parent=mRNA_chr19_KI270923v1_alt_2;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_2 198 293;exon_type=Internal;acceptor_score=4.27;donor_score=1.37;coding_potential=5.09;homology_score=21.64 chr19_KI270923v1_alt sgp2 exon 63829 64113 7.64 + . ID=exon_chr19_KI270923v1_alt_2.4;Parent=mRNA_chr19_KI270923v1_alt_2;acceptor_score=4.27;donor_score=1.37;homology_score=21.64 chr19_KI270923v1_alt sgp2 CDS 65600 65863 15.97 + 2 ID=cds_chr19_KI270923v1_alt_2;Parent=mRNA_chr19_KI270923v1_alt_2;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_2 293 381;exon_type=Internal;acceptor_score=3.26;donor_score=3.67;coding_potential=11.54;homology_score=8.73 chr19_KI270923v1_alt sgp2 exon 65600 65863 15.97 + . ID=exon_chr19_KI270923v1_alt_2.5;Parent=mRNA_chr19_KI270923v1_alt_2;acceptor_score=3.26;donor_score=3.67;homology_score=8.73 chr19_KI270923v1_alt sgp2 CDS 67391 67684 3.05 + 2 ID=cds_chr19_KI270923v1_alt_2;Parent=mRNA_chr19_KI270923v1_alt_2;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_2 381 479;exon_type=Internal;acceptor_score=5.69;donor_score=3.65;coding_potential=4.24;homology_score=-25.89 chr19_KI270923v1_alt sgp2 exon 67391 67684 3.05 + . ID=exon_chr19_KI270923v1_alt_2.6;Parent=mRNA_chr19_KI270923v1_alt_2;acceptor_score=5.69;donor_score=3.65;homology_score=-25.89 chr19_KI270923v1_alt sgp2 CDS 82159 82443 10.19 + 2 ID=cds_chr19_KI270923v1_alt_2;Parent=mRNA_chr19_KI270923v1_alt_2;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_2 479 574;exon_type=Internal;acceptor_score=1.88;donor_score=1.37;coding_potential=8.90;homology_score=26.68 chr19_KI270923v1_alt sgp2 exon 82159 82443 10.19 + . ID=exon_chr19_KI270923v1_alt_2.7;Parent=mRNA_chr19_KI270923v1_alt_2;acceptor_score=1.88;donor_score=1.37;homology_score=26.68 chr19_KI270923v1_alt sgp2 CDS 83317 83610 17.27 + 2 ID=cds_chr19_KI270923v1_alt_2;Parent=mRNA_chr19_KI270923v1_alt_2;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_2 574 672;exon_type=Internal;acceptor_score=5.69;donor_score=3.65;coding_potential=8.75;homology_score=13.84 chr19_KI270923v1_alt sgp2 exon 83317 83610 17.27 + . ID=exon_chr19_KI270923v1_alt_2.8;Parent=mRNA_chr19_KI270923v1_alt_2;acceptor_score=5.69;donor_score=3.65;homology_score=13.84 chr19_KI270923v1_alt sgp2 CDS 95681 95965 7.08 + 2 ID=cds_chr19_KI270923v1_alt_2;Parent=mRNA_chr19_KI270923v1_alt_2;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_2 672 767;exon_type=Internal;acceptor_score=3.89;donor_score=1.37;coding_potential=5.96;homology_score=15.52 chr19_KI270923v1_alt sgp2 exon 95681 95965 7.08 + . ID=exon_chr19_KI270923v1_alt_2.9;Parent=mRNA_chr19_KI270923v1_alt_2;acceptor_score=3.89;donor_score=1.37;homology_score=15.52 chr19_KI270923v1_alt sgp2 CDS 97079 97378 18.22 + 2 ID=cds_chr19_KI270923v1_alt_2;Parent=mRNA_chr19_KI270923v1_alt_2;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_2 767 867;exon_type=Internal;acceptor_score=4.67;donor_score=3.67;coding_potential=10.83;homology_score=14.43 chr19_KI270923v1_alt sgp2 exon 97079 97378 18.22 + . ID=exon_chr19_KI270923v1_alt_2.10;Parent=mRNA_chr19_KI270923v1_alt_2;acceptor_score=4.67;donor_score=3.67;homology_score=14.43 chr19_KI270923v1_alt sgp2 CDS 98931 99224 11.35 + 2 ID=cds_chr19_KI270923v1_alt_2;Parent=mRNA_chr19_KI270923v1_alt_2;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_2 867 965;exon_type=Internal;acceptor_score=5.69;donor_score=3.89;coding_potential=4.27;homology_score=15.74 chr19_KI270923v1_alt sgp2 exon 98931 99224 11.35 + . ID=exon_chr19_KI270923v1_alt_2.11;Parent=mRNA_chr19_KI270923v1_alt_2;acceptor_score=5.69;donor_score=3.89;homology_score=15.74 chr19_KI270923v1_alt sgp2 CDS 102648 102676 -1.71 + 2 ID=cds_chr19_KI270923v1_alt_2;Parent=mRNA_chr19_KI270923v1_alt_2;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_2 965 974;exon_type=Terminal;acceptor_score=4.87;coding_potential=3.35;homology_score=-8.79 chr19_KI270923v1_alt sgp2 exon 102648 102676 -1.71 + . ID=exon_chr19_KI270923v1_alt_2.12;Parent=mRNA_chr19_KI270923v1_alt_2;acceptor_score=4.87;homology_score=-8.79 ### # Gene 3 (Forward). 4 exons. 131 aa. Score = 18.53 chr19_KI270923v1_alt sgp2 gene 110131 125309 18.53 + . ID=chr19_KI270923v1_alt_3;Name=chr19_KI270923v1_alt_3 chr19_KI270923v1_alt sgp2 mRNA 110131 125309 18.53 + . ID=mRNA_chr19_KI270923v1_alt_3;Parent=chr19_KI270923v1_alt_3 chr19_KI270923v1_alt sgp2 CDS 110131 110164 4.14 + 0 ID=cds_chr19_KI270923v1_alt_3;Parent=mRNA_chr19_KI270923v1_alt_3;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_3 1 12;exon_type=First;start_score=4.35;donor_score=3.45;coding_potential=4.03;homology_score=-11.60 chr19_KI270923v1_alt sgp2 exon 110131 110164 4.14 + . ID=exon_chr19_KI270923v1_alt_3.1;Parent=mRNA_chr19_KI270923v1_alt_3;donor_score=3.45;homology_score=-11.60 chr19_KI270923v1_alt sgp2 CDS 114978 115241 16.31 + 2 ID=cds_chr19_KI270923v1_alt_3;Parent=mRNA_chr19_KI270923v1_alt_3;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_3 12 100;exon_type=Internal;acceptor_score=4.43;donor_score=3.31;coding_potential=10.39;homology_score=12.33 chr19_KI270923v1_alt sgp2 exon 114978 115241 16.31 + . ID=exon_chr19_KI270923v1_alt_3.2;Parent=mRNA_chr19_KI270923v1_alt_3;acceptor_score=4.43;donor_score=3.31;homology_score=12.33 chr19_KI270923v1_alt sgp2 CDS 125117 125169 2.80 + 2 ID=cds_chr19_KI270923v1_alt_3;Parent=mRNA_chr19_KI270923v1_alt_3;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_3 100 117;exon_type=Internal;acceptor_score=4.79;donor_score=4.30;coding_potential=3.29;homology_score=-18.28 chr19_KI270923v1_alt sgp2 exon 125117 125169 2.80 + . ID=exon_chr19_KI270923v1_alt_3.3;Parent=mRNA_chr19_KI270923v1_alt_3;acceptor_score=4.79;donor_score=4.30;homology_score=-18.28 chr19_KI270923v1_alt sgp2 CDS 125268 125309 -4.73 + 0 ID=cds_chr19_KI270923v1_alt_3;Parent=mRNA_chr19_KI270923v1_alt_3;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_3 118 131;exon_type=Terminal;acceptor_score=3.68;coding_potential=3.09;homology_score=-13.36 chr19_KI270923v1_alt sgp2 exon 125268 125309 -4.73 + . ID=exon_chr19_KI270923v1_alt_3.4;Parent=mRNA_chr19_KI270923v1_alt_3;acceptor_score=3.68;homology_score=-13.36 ### # Gene 4 (Forward). 9 exons. 687 aa. Score = 98.87 chr19_KI270923v1_alt sgp2 gene 127842 186890 98.87 + . ID=chr19_KI270923v1_alt_4;Name=chr19_KI270923v1_alt_4 chr19_KI270923v1_alt sgp2 mRNA 127842 186890 98.87 + . ID=mRNA_chr19_KI270923v1_alt_4;Parent=chr19_KI270923v1_alt_4 chr19_KI270923v1_alt sgp2 CDS 127842 127875 4.42 + 0 ID=cds_chr19_KI270923v1_alt_4;Parent=mRNA_chr19_KI270923v1_alt_4;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_4 1 12;exon_type=First;start_score=4.35;donor_score=3.45;coding_potential=4.23;homology_score=-11.60 chr19_KI270923v1_alt sgp2 exon 127842 127875 4.42 + . ID=exon_chr19_KI270923v1_alt_4.1;Parent=mRNA_chr19_KI270923v1_alt_4;donor_score=3.45;homology_score=-11.60 chr19_KI270923v1_alt sgp2 CDS 129364 129648 11.59 + 2 ID=cds_chr19_KI270923v1_alt_4;Parent=mRNA_chr19_KI270923v1_alt_4;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_4 12 107;exon_type=Internal;acceptor_score=3.89;donor_score=1.37;coding_potential=8.27;homology_score=22.57 chr19_KI270923v1_alt sgp2 exon 129364 129648 11.59 + . ID=exon_chr19_KI270923v1_alt_4.2;Parent=mRNA_chr19_KI270923v1_alt_4;acceptor_score=3.89;donor_score=1.37;homology_score=22.57 chr19_KI270923v1_alt sgp2 CDS 131113 131412 14.61 + 2 ID=cds_chr19_KI270923v1_alt_4;Parent=mRNA_chr19_KI270923v1_alt_4;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_4 107 207;exon_type=Internal;acceptor_score=4.67;donor_score=3.67;coding_potential=7.22;homology_score=21.45 chr19_KI270923v1_alt sgp2 exon 131113 131412 14.61 + . ID=exon_chr19_KI270923v1_alt_4.3;Parent=mRNA_chr19_KI270923v1_alt_4;acceptor_score=4.67;donor_score=3.67;homology_score=21.45 chr19_KI270923v1_alt sgp2 CDS 132985 133278 7.40 + 2 ID=cds_chr19_KI270923v1_alt_4;Parent=mRNA_chr19_KI270923v1_alt_4;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_4 207 305;exon_type=Internal;acceptor_score=5.69;donor_score=3.65;coding_potential=2.38;homology_score=10.44 chr19_KI270923v1_alt sgp2 exon 132985 133278 7.40 + . ID=exon_chr19_KI270923v1_alt_4.4;Parent=mRNA_chr19_KI270923v1_alt_4;acceptor_score=5.69;donor_score=3.65;homology_score=10.44 chr19_KI270923v1_alt sgp2 CDS 152697 152732 2.36 + 2 ID=cds_chr19_KI270923v1_alt_4;Parent=mRNA_chr19_KI270923v1_alt_4;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_4 305 317;exon_type=Internal;acceptor_score=4.17;donor_score=5.70;coding_potential=1.64;homology_score=-12.30 chr19_KI270923v1_alt sgp2 exon 152697 152732 2.36 + . ID=exon_chr19_KI270923v1_alt_4.5;Parent=mRNA_chr19_KI270923v1_alt_4;acceptor_score=4.17;donor_score=5.70;homology_score=-12.30 chr19_KI270923v1_alt sgp2 CDS 162602 162892 16.30 + 2 ID=cds_chr19_KI270923v1_alt_4;Parent=mRNA_chr19_KI270923v1_alt_4;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_4 317 414;exon_type=Internal;acceptor_score=4.03;donor_score=4.37;coding_potential=18.79;homology_score=-50.92 chr19_KI270923v1_alt sgp2 exon 162602 162892 16.30 + . ID=exon_chr19_KI270923v1_alt_4.6;Parent=mRNA_chr19_KI270923v1_alt_4;acceptor_score=4.03;donor_score=4.37;homology_score=-50.92 chr19_KI270923v1_alt sgp2 CDS 165404 165661 3.85 + 2 ID=cds_chr19_KI270923v1_alt_4;Parent=mRNA_chr19_KI270923v1_alt_4;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_4 414 500;exon_type=Internal;acceptor_score=4.16;donor_score=4.29;coding_potential=4.35;homology_score=-15.35 chr19_KI270923v1_alt sgp2 exon 165404 165661 3.85 + . ID=exon_chr19_KI270923v1_alt_4.7;Parent=mRNA_chr19_KI270923v1_alt_4;acceptor_score=4.16;donor_score=4.29;homology_score=-15.35 chr19_KI270923v1_alt sgp2 CDS 183890 184174 21.62 + 2 ID=cds_chr19_KI270923v1_alt_4;Parent=mRNA_chr19_KI270923v1_alt_4;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_4 500 595;exon_type=Internal;acceptor_score=2.57;donor_score=2.38;coding_potential=16.14;homology_score=21.08 chr19_KI270923v1_alt sgp2 exon 183890 184174 21.62 + . ID=exon_chr19_KI270923v1_alt_4.8;Parent=mRNA_chr19_KI270923v1_alt_4;acceptor_score=2.57;donor_score=2.38;homology_score=21.08 chr19_KI270923v1_alt sgp2 CDS 186612 186890 16.74 + 2 ID=cds_chr19_KI270923v1_alt_4;Parent=mRNA_chr19_KI270923v1_alt_4;Target=sgp2_predicted_protein_chr19_KI270923v1_alt_4 595 687;3_prime_partial=true;exon_type=Internal;acceptor_score=2.11;donor_score=3.65;coding_potential=10.98;homology_score=26.06 chr19_KI270923v1_alt sgp2 exon 186612 186890 16.74 + . ID=exon_chr19_KI270923v1_alt_4.9;Parent=mRNA_chr19_KI270923v1_alt_4;3_prime_partial=true;acceptor_score=2.11;donor_score=3.65;homology_score=26.06 ###