## date Wed Apr 30 10:54:10 2014
## source-version: sgp2 -- geneid@crg.es
# Sequence chr17_GL383563v3_alt - Length = 375691 bps
# Optimal Gene Structure. 6 genes. Score = 334.81 
# Gene 1 (Reverse). 7 exons. 500 aa. Score = 9.62 
Internal    37772    37797	 2.86	- 2 0	 0.82	 5.97	 3.46	 1.76	AA 492:500 chr17_GL383563v3_alt_1
    exon    37772    37797	 2.86	- . .	 0.82	 5.97	 3.46	 1.76
Internal    38893    38951	 6.61	- 1 1	 4.58	 2.87	 5.27	 3.17	AA 472:492 chr17_GL383563v3_alt_1
    exon    38893    38951	 6.61	- . .	 4.58	 2.87	 5.27	 3.17
Internal    43512    43530	-2.79	- 2 2	 1.30	 3.98	 1.40	-6.33	AA 466:472 chr17_GL383563v3_alt_1
    exon    43512    43530	-2.79	- . .	 1.30	 3.98	 1.40	-6.33
Internal    49853    49880	-1.59	- 0 1	 3.49	 2.06	 3.13	-9.49	AA 457:466 chr17_GL383563v3_alt_1
    exon    49853    49880	-1.59	- . .	 3.49	 2.06	 3.13	-9.49
Internal    56879    58038	 9.70	- 2 0	-0.78	 0.08	15.52	10.49	AA  70:456 chr17_GL383563v3_alt_1
    exon    56879    58038	 9.70	- . .	-0.78	 0.08	15.52	10.49
Internal    58383    58578	 3.19	- 0 1	 4.10	 1.71	14.52	-68.55	AA   5: 70 chr17_GL383563v3_alt_1
    exon    58383    58578	 3.19	- . .	 4.10	 1.71	14.52	-68.55
   First    77629    77640	-8.36	- 0 0	 2.01	-0.52	 0.45	-3.87	AA   1:  4 chr17_GL383563v3_alt_1
    exon    77629    77640	-8.36	- . .	 2.01	-0.52	 0.45	-3.87

>chr17_GL383563v3_alt_1|sgp2_predicted_cDNA_1|1500_NN
ATGCAGAACAGGGTATTTCAGGACAGCCAGGAGGGGGCGCACATCCGCCGAGAAACTGTG
AGCAAGAGCGTCTGTGCTGAACCATGGCGCCACCAGAGGGCGCGCGATCCCGCCGCAACC
AACTTCCCGCTGAGGTGCCAGAAGCAGCGAGGAGCTTCGACTTCCTCAGGGCAGCACGGG
GGTCGCGTTAACTTGGTGTTCTTCATTGTCCACACCATCGCTTCCAATACTAATGTAATA
ATATCCACACCATGCCCTATCACTGATCTAGTCCACACCATCGCTTCCAATACTAATGTA
ATAATATCCACACCATGCCCTATCACTGATCTAATCCACACCATCGCTTCCAATACTAAT
GTAATAATATCCACACCATGCCCTATCACTGATCTAGTCCACACCATCGCTTCCAATACT
AATGTAATAATATCCACACCATGCCCTATCACTGATGTAATCCACACCATCGCTTCCAAT
ACTAATGTAATAATATCCACACCATGCCCTATCACTGATGTAGTCCACACCATCGCTTCC
AATACTAATGTAATAATATCCACACCATGCCCTATCACTGATCTAATCCACACCATCGCT
TCCAATACTAATGTAATAATATCCACACCATGCCCTATCACTGATCTAGTCCACACCATC
GCTTCCAATACTAATGTAATAATATCCACACCATGCCCTATCACTGATCTAATCCACACC
ATCGCTTCCAATACTAATGTAATAATATCCACACCATGCCCTATCACTGATCTAATCCAC
ACCATCGCTTCCAATACTAATGTAATAATATCCACACCATGCCCTATCACTGATCTAATC
CACACCATCGCTTCCAATACTAATGTAATAATATCCACACCATGCCCTAACACTGATGTA
ATCCACACCATCGCTTCCAATACTAATGTAATAATATCCACACCATGCCCTATCACTGAT
CTAGTCCACACCATCGCTTCCAATACTAATGTAATAATATCCACACCATGCCCTATCACT
GATCTAGTCCACACCATCGCTTCCAATACTAATGTAATAATATCCACACCATGCCCTAAC
ACTGATCTAATCCACACCATCGCTTTCAATACTAATGTAATAATATCCACACCATGCCCT
ATCACTGATCTAGTCCACACCATCGCTTCCAATACTAATGTAATAATATCCACACCATGC
CCTAACACTGATCTAATCCACACCATCGCTTTCAATACTAATGTAATAATATCCACACCA
TGCCCTATCACTGATCTAGTCCACACCATCGCTTCCAATACTAATGTAATAATATCCACA
CCATGCCCTATCACTGATCTAGTCCACACCATCGCTTCCAATACTAATAAGCCCAAGAGG
GCAGAAAAAGAAGTAGGCAGTGGCATGAGTTCCATACATGAACTTATGAATTCAACAGGT
GAAGATTTACAACTTGATAAATCAACTTTGTCAGCTCGAGCTGTAAAAGCCAAAGGTCCG


>chr17_GL383563v3_alt_1|sgp2_predicted_protein_1|500_AA
MQNRVFQDSQEGAHIRRETVSKSVCAEPWRHQRARDPAATNFPLRCQKQRGASTSSGQHG
GRVNLVFFIVHTIASNTNVIISTPCPITDLVHTIASNTNVIISTPCPITDLIHTIASNTN
VIISTPCPITDLVHTIASNTNVIISTPCPITDVIHTIASNTNVIISTPCPITDVVHTIAS
NTNVIISTPCPITDLIHTIASNTNVIISTPCPITDLVHTIASNTNVIISTPCPITDLIHT
IASNTNVIISTPCPITDLIHTIASNTNVIISTPCPITDLIHTIASNTNVIISTPCPNTDV
IHTIASNTNVIISTPCPITDLVHTIASNTNVIISTPCPITDLVHTIASNTNVIISTPCPN
TDLIHTIAFNTNVIISTPCPITDLVHTIASNTNVIISTPCPNTDLIHTIAFNTNVIISTP
CPITDLVHTIASNTNVIISTPCPITDLVHTIASNTNKPKRAEKEVGSGMSSIHELMNSTG
EDLQLDKSTLSARAVKAKGP

# Gene 2 (Forward). 1 exons. 68 aa. Score = 34.36 
  Single    78205    78408	34.36	+ 0 0	 2.31	 0.00	28.47	17.58	AA   1: 68 chr17_GL383563v3_alt_2
    exon    78205    78408	34.36	+ . .	 2.31	 0.00	28.47	17.58

>chr17_GL383563v3_alt_2|sgp2_predicted_cDNA_2|204_NN
ATGGCCACGGGGGAGGACAACGATGAGTTTTTCATGGACTTCCTGCAAACACTACTGGTG
GGGACCCCAGAGGAGCTCTATGAGGGGACCTTGGGCAAGTACAATGTCAACGAAGATGCC
AAGGCAGCAATGACTGAACTCAAGTCCTGCAGAGATGGCCTGCAGCCAATGCACAAGGCG
GAGCTGGTCAAGCTGCTGGTATGA

>chr17_GL383563v3_alt_2|sgp2_predicted_protein_2|68_AA
MATGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAKAAMTELKSCRDGLQPMHKA
ELVKLLV*

# Gene 3 (Reverse). 10 exons. 372 aa. Score = 224.55 
Terminal    87441    87577	32.33	- 2 0	 0.00	 5.95	23.57	13.24	AA 327:372 chr17_GL383563v3_alt_3
    exon    87441    87577	32.33	- . .	 0.00	 5.95	23.57	13.24
Internal    88173    88269	21.49	- 0 1	 3.32	 1.59	17.29	 9.75	AA 295:327 chr17_GL383563v3_alt_3
    exon    88173    88269	21.49	- . .	 3.32	 1.59	17.29	 9.75
Internal    89111    89192	11.24	- 1 0	 2.98	 1.42	11.39	 2.53	AA 267:294 chr17_GL383563v3_alt_3
    exon    89111    89192	11.24	- . .	 2.98	 1.42	11.39	 2.53
Internal    96222    96379	41.90	- 0 2	 2.74	 3.12	30.01	17.79	AA 215:267 chr17_GL383563v3_alt_3
    exon    96222    96379	41.90	- . .	 2.74	 3.12	30.01	17.79
Internal   101417   101543	29.62	- 1 0	 2.83	 2.29	22.23	15.26	AA 172:214 chr17_GL383563v3_alt_3
    exon   101417   101543	29.62	- . .	 2.83	 2.29	22.23	15.26
Internal   102083   102192	19.04	- 0 2	 2.48	 4.42	12.88	12.77	AA 136:172 chr17_GL383563v3_alt_3
    exon   102083   102192	19.04	- . .	 2.48	 4.42	12.88	12.77
Internal   104132   104206	16.07	- 0 0	 3.70	 4.75	 9.81	 6.94	AA 111:135 chr17_GL383563v3_alt_3
    exon   104132   104206	16.07	- . .	 3.70	 4.75	 9.81	 6.94
Internal   111459   111538	24.55	- 2 0	 2.75	 5.97	15.64	 7.41	AA  84:110 chr17_GL383563v3_alt_3
    exon   111459   111538	24.55	- . .	 2.75	 5.97	15.64	 7.41
Internal   120039   120092	 7.73	- 2 1	 2.17	-3.03	17.56	-18.63	AA  66: 84 chr17_GL383563v3_alt_3
    exon   120039   120092	 7.73	- . .	 2.17	-3.03	17.56	-18.63
   First   120216   120411	20.59	- 0 1	-0.21	-0.44	25.10	-12.30	AA   1: 66 chr17_GL383563v3_alt_3
    exon   120216   120411	20.59	- . .	-0.21	-0.44	25.10	-12.30

>chr17_GL383563v3_alt_3|sgp2_predicted_cDNA_3|1116_NN
ATGACCCTCCGGCGGCGCGGGGAGAAGGCGACCATCAGCATCCAGGAGCATATGGCCATC
GACGTGTGCCCCGGCCCCACCCGGCCCATCAAGCAGATCTCCGACTACTTCCCCCGCTTC
CCGCGGGGCCTGCCCCCGGACGCCGGGCCCCGAGCCGCTGCACCCCCGGACGCCCCCGCG
CGCCCGGCTGTGGCCGCCAAGCCGCCGGAGGACGAGCCGGACGCCGACGGCTACGAGTCG
GACGACTGCACTGCCCTGGGCACGCTGGACTTCAGCCTGCTGTATGACCAGGAGAACAAC
GCCCTCCACTGCACCATCACCAAGGCCAAGGGCCTGAAGCCAATGGACCACAATGGGCTG
GCAGACCCCTACGTCAAGCTGCACCTGCTGCCAGGAGCCAGTAAGGCAAATAAGCTCAGA
ACAAAAACTCTCCGTAACACTCTGAACCCCACATGGAACGAGACCCTCACTTACTACGGG
ATCACAGATGAAGACATGATCCGCAAGACCCTGCGGATCTCTGTGTGTGACGAGGACAAA
TTCCGGCACAATGAGTTCATCGGGGAGACACGTGTGCCCCTGAAGAAGCTGAAACCCAAC
CACACCAAGACCTTCAGCATCTGCCTGGAGAAGCAGCTGCCGGTGGACAAGACTGAAGAC
AAGTCCCTGGAGGAGCGGGGCCGCATCCTCATCTCCCTCAAGTACAGCTCACAGAAGCAA
GGCCTGCTGGTAGGCATCGTGCGGTGCGCCCACCTGGCCGCCATGGACGCCAACGGCTAC
TCGGACCCCTACGTGAAAACATACCTGAGGCCAGATGTGGACAAGAAATCCAAACATAAG
ACAGCGGTGAAGAAAAAAACCCTGAACCCGGAGTTTAATGAGGAGTTCTGTTACGAGATC
AAGCATGGGGACCTGGCCAAGAAGTCCCTGGAGGTCACCGTTTGGGATTACGACATTGGA
AAATCCAACGATTTCATTGGTGGTGTGGTTCTGGGCATCCACGCCAAGGGGGAGCGCCTG
AAGCACTGGTTTGACTGCCTGAAGAACAAGGACAAGCGCATCGAGCGCTGGCACACGCTC
ACCAGCGAGCTCCCAGGGGCTGTGCTCAGCGACTGA

>chr17_GL383563v3_alt_3|sgp2_predicted_protein_3|372_AA
MTLRRRGEKATISIQEHMAIDVCPGPTRPIKQISDYFPRFPRGLPPDAGPRAAAPPDAPA
RPAVAAKPPEDEPDADGYESDDCTALGTLDFSLLYDQENNALHCTITKAKGLKPMDHNGL
ADPYVKLHLLPGASKANKLRTKTLRNTLNPTWNETLTYYGITDEDMIRKTLRISVCDEDK
FRHNEFIGETRVPLKKLKPNHTKTFSICLEKQLPVDKTEDKSLEERGRILISLKYSSQKQ
GLLVGIVRCAHLAAMDANGYSDPYVKTYLRPDVDKKSKHKTAVKKKTLNPEFNEEFCYEI
KHGDLAKKSLEVTVWDYDIGKSNDFIGGVVLGIHAKGERLKHWFDCLKNKDKRIERWHTL
TSELPGAVLSD*

# Gene 4 (Forward). 2 exons. 47 aa. Score = 0.66 
   First   158786   158804	-2.43	+ 0 1	 3.20	 2.00	 1.01	-6.33	AA   1:  7 chr17_GL383563v3_alt_4
    exon   158786   158804	-2.43	+ . .	 3.20	 2.00	 1.01	-6.33
Terminal   181285   181406	 3.09	+ 2 0	 4.97	 0.00	 6.53	-9.90	AA   7: 47 chr17_GL383563v3_alt_4
    exon   181285   181406	 3.09	+ . .	 4.97	 0.00	 6.53	-9.90

>chr17_GL383563v3_alt_4|sgp2_predicted_cDNA_4|141_NN
ATGGCCAACAGGGTGTCTGGCCCAGAGACAGACAGGAGGCACCAGATAACGAAGACAAAT
CCTCAAATCGATAGAGATGTGGTCACCAGCATCGAAATCTCACAGTCCCTGCACTCGCTT
GAGGAGCTCCAGATAGAATGA

>chr17_GL383563v3_alt_4|sgp2_predicted_protein_4|47_AA
MANRVSGPETDRRHQITKTNPQIDRDVVTSIEISQSLHSLEELQIE*

# Gene 5 (Reverse). 4 exons. 199 aa. Score = 18.16 
Terminal   182865   182995	-1.46	- 2 0	 0.00	 2.13	 5.78	-5.80	AA 156:199 chr17_GL383563v3_alt_5
    exon   182865   182995	-1.46	- . .	 0.00	 2.13	 5.78	-5.80
Internal   191142   191168	 1.45	- 2 1	 3.91	 6.27	-0.18	-9.09	AA 147:156 chr17_GL383563v3_alt_5
    exon   191142   191168	 1.45	- . .	 3.91	 6.27	-0.18	-9.09
Internal   198732   198906	16.82	- 0 1	 5.44	 2.04	 9.37	21.83	AA  89:147 chr17_GL383563v3_alt_5
    exon   198732   198906	16.82	- . .	 5.44	 2.04	 9.37	21.83
   First   232771   233034	 1.35	- 0 0	 2.80	 3.44	14.93	-92.46	AA   1: 88 chr17_GL383563v3_alt_5
    exon   232771   233034	 1.35	- . .	 2.80	 3.44	14.93	-92.46

>chr17_GL383563v3_alt_5|sgp2_predicted_cDNA_5|597_NN
ATGCTGCGGATTCTGAGTCCCCATCCAGCGCTCGCGGCTCCGAAGGGTAATCCTGCTGTC
AACATGCTGCAGATTCTGAGTCCCCATCCAGCGCGCACGGCTCCGAAGGGTAATCCTGCT
GTCAACGTGCTGCGGATTCTGAGTCCCCATCCAGCGCGCACGGCTCCGAAGGGTAATCCT
GCTGTCAACGTGCTGCGGATTCTGAGTCCCCATCCAGCGCTCGCGGCTCCGAAGGGTAAT
CCTGCTGTCAGCCAGAACTTTGAGGTCTGGAAGAGGTCGGGGGCCTGGTTCTACAAAGGG
CTCCCCAAGTATATCTTGCCCCTGAAGACCCCTGGCCGAGCTGATGACCCCCACTTCCGA
CCTTTGCCCACGGAACCGGCAGAGCGAGAGCCCAGAAGCTCTGAGACCAGCCGCATCTAC
ACGTGGGCCCGAGGAAGAGGTGTATCCAGAAACACACTGCAGATAGCAGCCCACCTGCCT
GTCGTGGGCCTCCTCGCTGGCTTAGAGGTGGATTTCCAAGAGCAGAAGGCCCTCATCAGC
CACACCACGGAGGTCAGGAGCATGGCTGTCGCCTCTAATTTGCCCGAGACCCAATGA

>chr17_GL383563v3_alt_5|sgp2_predicted_protein_5|199_AA
MLRILSPHPALAAPKGNPAVNMLQILSPHPARTAPKGNPAVNVLRILSPHPARTAPKGNP
AVNVLRILSPHPALAAPKGNPAVSQNFEVWKRSGAWFYKGLPKYILPLKTPGRADDPHFR
PLPTEPAEREPRSSETSRIYTWARGRGVSRNTLQIAAHLPVVGLLAGLEVDFQEQKALIS
HTTEVRSMAVASNLPETQ*

# Gene 6 (Reverse). 5 exons. 150 aa. Score = 47.47 
Terminal   248624   248635	-5.53	- 0 0	 0.00	 3.93	 0.77	-2.81	AA 147:150 chr17_GL383563v3_alt_6
    exon   248624   248635	-5.53	- . .	 0.00	 3.93	 0.77	-2.81
Internal   251222   251308	10.06	- 0 0	 3.35	 4.33	 6.21	10.08	AA 118:146 chr17_GL383563v3_alt_6
    exon   251222   251308	10.06	- . .	 3.35	 4.33	 6.21	10.08
Internal   290736   290865	17.64	- 1 0	 4.40	 3.67	11.76	 4.22	AA  74:117 chr17_GL383563v3_alt_6
    exon   290736   290865	17.64	- . .	 4.40	 3.67	11.76	 4.22
Internal   292686   292829	 7.74	- 1 2	 2.70	 0.18	17.79	-49.99	AA  26: 74 chr17_GL383563v3_alt_6
    exon   292686   292829	 7.74	- . .	 2.70	 0.18	17.79	-49.99
   First   298902   298978	17.56	- 0 2	 2.74	 5.18	10.84	 6.38	AA   1: 26 chr17_GL383563v3_alt_6
    exon   298902   298978	17.56	- . .	 2.74	 5.18	10.84	 6.38

>chr17_GL383563v3_alt_6|sgp2_predicted_cDNA_6|450_NN
ATGGCCGACACCATCTTCGGCAGCGGGAATGATCAGTGGGTTTGCCCCAATGACCGGCAG
CTTGCCCTTCGAGCCAAGCTGCAGACGGGCTGGTCCGTGCACACCTACCAGACGGAGAAG
CAGAGGAGGAAGCAGCACCTCAGCCCGGCGGAGGTGGAGGCCATCCTGCAGGTCATCCAG
AGGGCAGAGCGGCTCGACGTCCTGGAGCAGCAGAGAATCGGGCGGCTGGTGGAGCGGCTG
GAGACCATGAGGCGGAATGTGATGGGGAACGGCCTGTCCCAGTGTCTGCTCTGCGGGGAG
GTGCTGGGCTTCCTGGGCAGCTCGTCGGTGTTCTGCAAAGACTGCAGGAAGAAAGTCTGC
ACCAAATGTGGGATCGAGGCCTCCCCTGGCCAGAAGCGGCCCCTGTGGCTGTGTAAGATC
TGCAGTGAGCAAAGAGAGAAAAATGTCTAA

>chr17_GL383563v3_alt_6|sgp2_predicted_protein_6|150_AA
MADTIFGSGNDQWVCPNDRQLALRAKLQTGWSVHTYQTEKQRRKQHLSPAEVEAILQVIQ
RAERLDVLEQQRIGRLVERLETMRRNVMGNGLSQCLLCGEVLGFLGSSSVFCKDCRKKVC
TKCGIEASPGQKRPLWLCKICSEQREKNV*