## date Fri Nov 18 16:51:33 2005 ## source-version: geneid v 1.2 -- geneid@imim.es # Sequence chr24_random - Length = 149561 bps # Optimal Gene Structure. 5 genes. Score = 528.96 # Gene 1 (Forward). 1 exons. 24 aa. Score = 0.84 Terminal 21979 22050 0.84 + 0 0 5.87 0.00 6.93 -26.56 AA 1: 24 chr24_random_1 >chr24_random_1|SGP_v1.0_predicted_cDNA_1|72_NN TCTCAGAAATGCCCTCGAGTAAACAGGACCTTATCTCCCCGAGCAGCTGATAAAGCTCTA TCATTGAAGTGA >chr24_random_1|SGP_v1.0_predicted_protein_1|24_AA SQKCPRVNRTLSPRAADKALSLK* # Gene 2 (Forward). 4 exons. 123 aa. Score = 15.86 First 23143 23276 4.58 + 0 2 3.10 -0.04 15.13 -51.59 AA 1: 45 chr24_random_2 Internal 60574 60624 -0.05 + 1 2 4.48 0.78 5.63 -19.63 AA 45: 62 chr24_random_2 Internal 74845 75017 12.33 + 1 1 6.53 2.50 5.64 18.07 AA 62:120 chr24_random_2 Terminal 79695 79705 -1.00 + 2 0 7.73 0.00 0.27 -3.08 AA 120:123 chr24_random_2 >chr24_random_2|SGP_v1.0_predicted_cDNA_2|369_NN ATGGCTGTGCTTGACGTGGCAGCGTCGCAGAACACGGAGCAAACATCAGCTGAGCGCTTC AAGGAGAGCCTTGCGGAACAAAGATTTTTCCTGAAGGCCTTCAGGGTGAATTTACACTCG AGCCGAAAGCATTGCAACCTGCTGTACCGCCAGACTCCCATTCCTCATAGCACAAGTCAG AGCAGGCCTACGGACATGAGGTGGTTAAGAGTAGATGATGAGATGCCTCAACACGTTGTA GTGTCTGGTTCAAACCTTCTCATTAGTAACCTAAACAAAACAGATAATGGTACATACCGC TGTGAGGCTTCAAACGCGGTGGGGAAATCACATGCGGATTACATGCTGTTTGTATACGGT GGTTATTAA >chr24_random_2|SGP_v1.0_predicted_protein_2|123_AA MAVLDVAASQNTEQTSAERFKESLAEQRFFLKAFRVNLHSSRKHCNLLYRQTPIPHSTSQ SRPTDMRWLRVDDEMPQHVVVSGSNLLISNLNKTDNGTYRCEASNAVGKSHADYMLFVYG GY* # Gene 3 (Reverse). 4 exons. 140 aa. Score = 39.78 Terminal 113639 113773 30.11 - 0 0 0.00 4.18 24.40 12.33 AA 96:140 chr24_random_3 Internal 114135 114200 8.05 - 0 0 3.53 5.78 3.91 3.08 AA 74: 95 chr24_random_3 Internal 114445 114531 3.39 - 0 0 4.55 5.60 -0.64 4.68 AA 45: 73 chr24_random_3 First 114880 115011 -1.78 - 0 0 2.71 -1.93 4.75 5.38 AA 1: 44 chr24_random_3 >chr24_random_3|SGP_v1.0_predicted_cDNA_3|420_NN ATGTGGAGGTCTCTGTTGCAGTCAGAAACGTGCAGTGTGGAGATTCCAGAGCTGGAGTTT GAGCTGGGAATGGGAGCGCTGGGAGGGAAATTCACCACTCTGGAAGGGTTGCTGAAAGAC ATCAAAGACTTGGTTGAGAGAAACCCTTTCACTTTGGGGGACAGCTCTACTCCAAGCAAA ACAGAAAAGCTGCAGGAGTTCCTTGGCAGATTGCAGGAGGTAATAGAAGGAAAGACAAAG ACTGTCTTTATAATGGATGACCCTGCAGGCAACAGCTATCTTCAGAACGTGTACGCCCCG GAGGAGGACCCGGAGCTGAAGGTGGAGCACTACGAACGCACGTTTGAGCAGAACGAAGAC CTGGGCCTCAACGACATGAAGACTGAGGGCTATGAGACAGCGCCGCCCTCGGGCCGATAG >chr24_random_3|SGP_v1.0_predicted_protein_3|140_AA MWRSLLQSETCSVEIPELEFELGMGALGGKFTTLEGLLKDIKDLVERNPFTLGDSSTPSK TEKLQEFLGRLQEVIEGKTKTVFIMDDPAGNSYLQNVYAPEEDPELKVEHYERTFEQNED LGLNDMKTEGYETAPPSGR* # Gene 4 (Reverse). 3 exons. 339 aa. Score = 82.56 Terminal 115704 116598 85.48 - 1 0 0.00 3.47 114.53 -343.42 AA 41:339 chr24_random_4 Internal 116710 116821 4.49 - 2 2 3.43 5.61 7.65 -43.12 AA 4: 41 chr24_random_4 First 130124 130133 -7.41 - 0 1 2.01 -0.26 1.21 -3.85 AA 1: 4 chr24_random_4 >chr24_random_4|SGP_v1.0_predicted_cDNA_4|1017_NN ATGTCAGCAGTGTCACCAGCCGAGCTGGCACGGAGTGGCTTCTGGGAGTACCTCAGCCAG CTGACCAGTGACAAGGACAGCCTTGAGCAGGCACAGGGCAGCAAGCTGGGCAGGGAGTTC ACAAATCTGAAGGAAAGCCTCCAGGATAGGGTCAGCAACGTGGGGAACTTCCTCGAGAAG CTGGCACCTCTCCACAGAGGCATCCAGCCACGGCTGTACCACGACTCCGACAGCCTGCGG AAGCTCATCAGGAAGGAGCTGGAGAGCCTGAGAGTGAAACTGTCCCCTTACGTGGACGAC GTGCACCACAGAGTCGGCAAGCACCTGGAAGACCTCCGCTATCAGCTGCAGCCCTTCACC GAGGAGCTGCTGGACCAGGTGTCCCTCCGTGCGCGGGAGCTGCAGCGGCACCTGACGCCC AGCCGCGACGTGGCGGCTCAGCTGCTGGACGGCGTGGACGAAGTGCAGCGCTTCATGGCT CACTACGCTGATAAGATCGCCTTCCACACCGACCAGGTGAAGGATATCTTCCAGCCGTAC GCCGACAGGCTGGTGAGCGAGATCCAGCGCTCAGTGGAGGAGCTGCACAGGAACGTGGTG CCGCACAGCCCCGGCAGCCCGGAGCAGCTCAACCAGCACATCCGTGAGCTGTCCGCCAAG CTGACGCAGAACGCGCGGGATCTGCACCGCAACATCCAGCGCAACCTGGAGCAGCTGAAG GCCAAGCTCAGCCTTCGCCCCGGTGGCCCCGGGGAGCGCTACGCCGAGGAGATGGCCAGC GAGGTGCAGCGGCGCATCGAGGAGTTCCGCAGGGACACCTATCTCCAGATCCAGGACTTC ACGCGGGCCGTGCACCAGGAGACGGAGGACATGAGGCTGAAGCTGTCCTCCCGGCCCCAC TACCCGGAGGAGGCCGCGGGCAGCCCGGCCCCGCTGGAGGACCTGCGGGCCAGCCTGGAC GCGCTGTGGCGGGATCTGTCGCACAGCCTGAGCGAGCGCGGCGGGGACGCGCCCTGA >chr24_random_4|SGP_v1.0_predicted_protein_4|339_AA MSAVSPAELARSGFWEYLSQLTSDKDSLEQAQGSKLGREFTNLKESLQDRVSNVGNFLEK LAPLHRGIQPRLYHDSDSLRKLIRKELESLRVKLSPYVDDVHHRVGKHLEDLRYQLQPFT EELLDQVSLRARELQRHLTPSRDVAAQLLDGVDEVQRFMAHYADKIAFHTDQVKDIFQPY ADRLVSEIQRSVEELHRNVVPHSPGSPEQLNQHIRELSAKLTQNARDLHRNIQRNLEQLK AKLSLRPGGPGERYAEEMASEVQRRIEEFRRDTYLQIQDFTRAVHQETEDMRLKLSSRPH YPEEAAGSPAPLEDLRASLDALWRDLSHSLSERGGDAP* # Gene 5 (Forward). 21 exons. 706 aa. Score = 389.92 First 131220 131239 -1.42 + 0 2 1.27 3.86 2.76 -7.70 AA 1: 7 chr24_random_5 Internal 143741 143896 6.64 + 1 2 -1.39 0.28 16.35 -13.67 AA 7: 59 chr24_random_5 Internal 143974 144135 29.55 + 1 2 2.20 2.44 27.34 -18.12 AA 59:113 chr24_random_5 Internal 144220 144265 8.87 + 1 0 6.05 4.71 5.43 -17.71 AA 113:128 chr24_random_5 Internal 144342 144443 22.03 + 0 0 3.48 2.43 16.70 8.93 AA 129:162 chr24_random_5 Internal 144522 144605 29.31 + 0 0 2.18 3.68 22.25 7.62 AA 163:190 chr24_random_5 Internal 144700 144811 1.01 + 0 1 -1.58 0.84 9.36 4.28 AA 191:228 chr24_random_5 Internal 144891 144956 6.61 + 2 1 4.79 1.17 6.28 2.49 AA 228:250 chr24_random_5 Internal 145042 145135 18.61 + 2 2 -0.99 3.23 18.37 8.06 AA 250:281 chr24_random_5 Internal 145536 145659 36.24 + 1 0 0.94 3.42 29.41 4.36 AA 281:322 chr24_random_5 Internal 145743 145860 30.22 + 0 1 5.72 2.71 19.00 15.38 AA 323:362 chr24_random_5 Internal 145925 146061 26.32 + 2 0 2.21 3.26 21.67 -0.93 AA 362:407 chr24_random_5 Internal 146144 146252 17.98 + 0 1 3.76 1.89 13.74 11.04 AA 408:444 chr24_random_5 Internal 146818 146894 12.97 + 2 0 3.92 3.26 9.02 6.45 AA 444:469 chr24_random_5 Internal 147027 147073 9.10 + 0 2 6.71 2.02 4.97 2.94 AA 470:485 chr24_random_5 Internal 147374 147479 29.72 + 1 0 3.66 2.13 22.18 10.81 AA 485:520 chr24_random_5 Internal 147669 147700 -3.71 + 0 2 6.60 -1.59 -0.29 3.21 AA 521:531 chr24_random_5 Internal 148695 148893 45.73 + 1 0 3.84 2.91 27.71 47.54 AA 531:597 chr24_random_5 Internal 149021 149198 45.57 + 0 1 5.65 3.02 29.26 20.20 AA 598:657 chr24_random_5 Internal 149269 149371 17.75 + 2 2 2.51 3.23 13.62 9.98 AA 657:691 chr24_random_5 Terminal 149482 149527 0.81 + 1 0 5.91 0.00 4.75 -16.55 AA 691:706 chr24_random_5 >chr24_random_5|SGP_v1.0_predicted_cDNA_5|2118_NN ATGGAACAGGGCAAGAACCGGTCCCGCCGGGACCAAAGTGTCACCTTCCAACAGACCGTT GGCGTGCCGGTGTCGGTGAACGTCCTGTCCGACCACAATGACCTGCCCGTGCTCTTCGTG GTGAGGCAGAAGGAGGCGGTGGTCTCATTCCAAGTGCCGCTCATCCTCCGGGGGCTGTTC CAAAGGAAATACGCCTACCAGGAGGTGAGCCGCACGCTGTGCCAACCTCAGACCAAGGTG GAGGTGGAGACCCAACACTTCTTTGTGGACGTCTCCACGCTGTCCCTCAATGCCTCCTAC CAGCTGCGGGTCACCCGCGTGGAGAACTTCGTGCTGCGGACAAACGAAGCCTTCACCTTC AATGCCACAGCGTCACAGCCGCAGTACTTCAAGTATGAGTTCCCCGACGGAGTGGACTCG GTGATTGTGAAGGTGACCTCAGCCATGGCCTTCCCCTGCTCCGTCATCTCCATCCAGGAC ATCCTGTGCCCCGTCTACGACCTGGACAACAACGTGGCCTTCATCGGGATGTACCAGACC ATGACCAAGAAGGCGGCCATCACAGTGCAGAGGAAGGATTTCCCCAGCAACAGCTTCTAT GTGGTGGTTGTGGTGAAGACAGAAGATGAGGTGTGCGGAGGAGCCCTCCCCTACTACCCC CTCTCCAAGCGCACCTCCCCAGATGAGCCAGTGGATCAGCACAACCGGCAGAAAATGCTG GAGGTGATGGTGTCACCAGCCATAACCTCGGAGGCGTACGTGAGCAGCATGCTCTTCTGC CTCGGCATCTTCCTGTCCTTCTACGTCATCACGGTGCTCATCGCCTGCTGGGAGAACTGC CGCGCCTTCAACAACATCATCAGCAACCTGGGCTACGTGCTGCTGGGCTTGCTCTTCCTG CTCATCATCCTGCAGCGGGAGATCAACTACAACCGGGCTCTCATGCGCAATGACTCACAC GCCCTGGAGTGTGGCATCCCCAAGCACTTCGGGCTCTTCTATGCCATGGGCACGGCGCTG ATGATGGAGGGGCTGCTCAGTGCCTGCTACCACGTCTGCCCCAACTACACCAACTTCCAG TTTGACACCTCCTTCATGTATATGATTGCTGGGCTCTGCATGCTGAAGCTGTACCAGAAG AGGCACCCTGACATCAACGCCAGTGCCTACAGCGCCTATGCCTGTCTGGCTGTTGTCATC TTCTTCTCTGTCATTGGTGTGGTCTTTGGCAAAGGCAACATGGTCTTCTGGATCATCTTC TCTGTCATGCACATCATGGCCACATTGCTGCTGAGCACACAGCTCTACTACATGGGGCGC TGGAAGCTCGACACGGGCATCCTGCGCAGGATCCTTCACGTGATGTACACAGACTGTGTC CGGCAGTGCAGTGGCCCCATGTACGTGGACCGAATGGTGCTTTTGGTTATGGGAAACATC ATCAACTGGTCCCTCGCTGCCTACGGGCTCCTCGTCCGCCCCAATGACTTCGCTTCCTAC TTGCTGGCCATCGGCATCTGCAACCTGCTCCTCTACTTTGCCTTCTACATCATCATGAAG GGGCTCAGCACCTGGCAGGTAGGCATGCGGCCGTCTCTGCCCACCACAGCCATGGCGAAC AAGGGCCCGGCCTACGGCATGAGCAGGGATGTCCAGTCCAAGATCGAGAAGAAGTACGAC GACGAGCTGGAGGACCGCCTGGTGGAGTGGATCGTGGCTCAGTGCGGGTCCAGTGTGGGC CGCCCGGATCGGGGCCGCCTGGGCTTCCAGGTCTGGCTGAAGAACGGCATCGTCCTCAGC CAGCTGGTGAACAGCCTCTACCCCGACGGCTCCAAGCCTGTCAAGATCCCCGACAGCCCT CCCACCATGGTCTTCAAGCAGATGGAACAGATCGCCCAGTTCCTCAAGGCGGCTGAGGAC TACGGCGTGGTCAAGACAGACATGTTCCAGACCGTTGACCTCTTTGAAGCCAAGGATATG GCGGCGGTGCAGAGGACACTGGTGGCCCTGGGGAGCCTGGCGGTGACCAAGAATGATGGG CATTACCACGGGGATCCCAACTGGTTCATGAAGAAAAGGCAGGAACACAAGCGGGAGTTC TCCGAGAGCCAGCTGTAG >chr24_random_5|SGP_v1.0_predicted_protein_5|706_AA MEQGKNRSRRDQSVTFQQTVGVPVSVNVLSDHNDLPVLFVVRQKEAVVSFQVPLILRGLF QRKYAYQEVSRTLCQPQTKVEVETQHFFVDVSTLSLNASYQLRVTRVENFVLRTNEAFTF NATASQPQYFKYEFPDGVDSVIVKVTSAMAFPCSVISIQDILCPVYDLDNNVAFIGMYQT MTKKAAITVQRKDFPSNSFYVVVVVKTEDEVCGGALPYYPLSKRTSPDEPVDQHNRQKML EVMVSPAITSEAYVSSMLFCLGIFLSFYVITVLIACWENCRAFNNIISNLGYVLLGLLFL LIILQREINYNRALMRNDSHALECGIPKHFGLFYAMGTALMMEGLLSACYHVCPNYTNFQ FDTSFMYMIAGLCMLKLYQKRHPDINASAYSAYACLAVVIFFSVIGVVFGKGNMVFWIIF SVMHIMATLLLSTQLYYMGRWKLDTGILRRILHVMYTDCVRQCSGPMYVDRMVLLVMGNI INWSLAAYGLLVRPNDFASYLLAIGICNLLLYFAFYIIMKGLSTWQVGMRPSLPTTAMAN KGPAYGMSRDVQSKIEKKYDDELEDRLVEWIVAQCGSSVGRPDRGRLGFQVWLKNGIVLS QLVNSLYPDGSKPVKIPDSPPTMVFKQMEQIAQFLKAAEDYGVVKTDMFQTVDLFEAKDM AAVQRTLVALGSLAVTKNDGHYHGDPNWFMKKRQEHKREFSESQL*