SGP2 results

Predictions from SGP2 for chr22 (H. Sapiens))

## date Wed Sep 26 15:48:38 2001
## source-version: geneid v 1.1 -- geneid@imim.es
## Sequence chr22 - Length = 47662662 bps
# Optimal Gene Structure. 840 genes. Score = 8524.006291
Type Left position Right position Score Strand Frame Remainder Scoreleft Scoreright Scorecoding Scoresint.

# Gene chr22_82 (). 459 nt. 2 exons. 0 exons_sup. 0 %cov.
Terminal 15607034 15607072 -9.24 - 0 0 0.00 4.37 1.48 -3.90
First 15607451 15607870 20.10 - 0 0 2.42 -1.76 54.07 -42.00
>chr22|geneid_v1.1_predicted_cDNA_82|459_NN
ATGAGGATGCTCTATATGACATCGCTAATGACACCCACAAGGCATGCTAACAAGGACGCT
GTAGACGACATTGCTTATAAGGACACCGTACAAGACATCACTAACGAGGACGCTGTATAC
GACATCGCTAATGAGGACGTTGTATATGACATCGCTAATGAGGATGCTTTACAAGACATA
GCGAATGAGGTTGCTGTATATGACATCGCTAATGAGGACATTGTATATGACATCGCTAAT
GAGGACGCTCTATACGACATCACTAATGAGGACGCTGTATACAACATCGCTAATGAGGAC
GCTGTATATGGCATCGCTAATGAGGATGCTGTATACGAATTCGCTAATAAGGACGCTGTA
TATGACATTGCTAATGAGGACACTGTACAAGACATCTGTAAAAAAGAAGATGCTGCCAAT
GTGTCTTCCGTGCCAGTTTTGGGGGACTTTGACCTTTGA
>chr22|geneid_v1.1_predicted_protein_82|153_AA
MRMLYMTSLMTPTRHANKDAVDDIAYKDTVQDITNEDAVYDIANEDVVYDIANEDALQDI
ANEVAVYDIANEDIVYDIANEDALYDITNEDAVYNIANEDAVYGIANEDAVYEFANKDAV
YDIANEDTVQDICKKEDAANVSSVPVLGDFDL*

# Gene chr22_83 (). 807 nt. 2 exons. 0 exons_sup. 0 %cov.
Terminal 15608488 15609257 100.45 - 2 0 0.00 4.52 134.69 -77.00
First 15610165 15610201 -9.63 - 0 1 1.96 1.02 1.87 -3.70
>chr22|geneid_v1.1_predicted_cDNA_83|807_NN
ATGAGGAGCCATCTCACTATTGACCGGCTAGTGCCGGCTCCCCATGAGGACACCGTACAT
GACATCACTAACCAGGACGCCACACACGACATCGCTAACGAGGATACTGTCCACGGCATC
GCTAACGAGGCCGCCGACAAGGGCATCGCCAACGAGGACGCCGCCCAGGGCATCGCCAAC
GAGGACGCCGCCCACGGAATCGCCAGCGAGGATGCCGCCCAGGGCATCGCCAACGAGGTC
GCCGCCCAGGGCATCGCCAACGAGGACGCCGCCCAGGGCATCGCCAACGAGGACGCCGCC
CAGGGCATCGCCAAGGAGGACGCCGCCCACGGGATCGCCAAGGAGGACGCCGCCCAGGGC
ATCGCCAACGAGGACGCCGTCCACGGCATCGCCAACGAGGACGCCACCCATGGCATCGCC
AACGAGGACGCTGCCCACGGCATTGCTAACGAGGATGCCGTGCACGGCATCGCTAATGAG
GACTCCGTATACGACATCGCTAATGAGGGTGCCGTATATGACATCGCTAATGACACCGTA
CAAGGCACGCTAACGAGGACGCTGTACACGACATCGCTAATGAGGACACCATACAAGGCA
TCGGTAATGAGGACGCTGTATACGACATCGCTAACGAGGACACCATACAAGCCGTCGCTA
ACAAGGACACTGTACACAACATCGCTAATGACGGCACCGTACAAGACATCACCAATGAGG
GCGCTTTATACGACATTGCTAATGATACCGACAAGGCACGCTAACGTGGACGCTGTACAC
GACATTGCTAATGAGGACAGCGTATAA
>chr22|geneid_v1.1_predicted_protein_83|269_AA
MRSHLTIDRLVPAPHEDTVHDITNQDATHDIANEDTVHGIANEAADKGIANEDAAQGIAN
EDAAHGIASEDAAQGIANEVAAQGIANEDAAQGIANEDAAQGIAKEDAAHGIAKEDAAQG
IANEDAVHGIANEDATHGIANEDAAHGIANEDAVHGIANEDSVYDIANEGAVYDIANDTV
QGTLTRTLYTTSLMRTPYKASVMRTLYTTSLTRTPYKPSLTRTLYTTSLMTAPYKTSPMR
ALYTTLLMIPTRHANVDAVHDIANEDSV*

# Gene chr22_86 (). 1014 nt. 2 exons. 0 exons_sup. 0 %cov.
First 15676077 15676113 -9.64 + 0 1 1.02 1.96 1.87 -3.70
Terminal 15677021 15677997 74.08 + 2 0 4.55 0.00 130.52 -97.70
>chr22|geneid_v1.1_predicted_cDNA_86|1014_NN
ATGAGGAGCCATCTCACTATTGACCGGCTAGTGCCGGCTCCCCATGAGGACACCGTACAC
AACATCACTAACGAGGATGCCTCACACGATATCACTAACGAGGACGCTGTCCACGGCATC
GCTAACGAGGCCGCCGCCCAGGGCATCGCCAACGAGGACGCCGCCCAGGGCATCGCCAAC
GAGGACGCCGCCCACGGAATCGCCAGCGAGGACGCCGCCCAGGGCATCGCCAACGAGGTC
GCCGCCCAGGGCATCGCCAACGAGGACGCCGCCCAGGGCATCGCCAACGAGGACGCCGTC
CATGGCATCGCCAACGAGGACGCTGCCCACGGCATTGCTAACGAGGATGCCGTGCACGGC
ATCGCTAATGAGGACTCCGTATACGACATCGCTAATGAGGATGCCATATATGACATCGCT
AATGACACCGTACAAGGCACGCTAACGAGGATGCTGTACACGACATCGCTAATGAGGACA
CCATACAAGGCATCGGTAATGAGGACGTTGTATATGACATCGCTAACAAGGACACTCTAC
AAGCCGTCGCTAACAAGGACACTGTACACAACATCGCTAATGACGGCACCGTACAAGACA
TCACCAATGAGGGCGCTTTATACGACATTGCTAATGATACCGACAAGGCACGCTAACGCG
GACACTGTACACGACATCGCTAATGAGGACTCCGTATACGACATCGCTAATGAGGGTGCC
GTATATGACATCGCTAATGACACCGTACAAGGCACGCTAACGAGGACGCTGTACACGACA
TCGCTAATGAGGACACCATACAAGGCATCGGTAATGAGGACGCTGTATACGACATCGCTA
ACGAGGACACCATACAAGCCGTCGCTAACAAGGACACTGTACACAACATCGCTAATGACG
GCACCGTACAAGACATCACCAATGAGGGCGCTTTATACGACATTGCTAATGATACCGACA
AGGCACGCTAACGTGGACGCTGTACACGACATTGCTAATGAGGACACCGTATAA
>chr22|geneid_v1.1_predicted_protein_86|338_AA
MRSHLTIDRLVPAPHEDTVHNITNEDASHDITNEDAVHGIANEAAAQGIANEDAAQGIAN
EDAAHGIASEDAAQGIANEVAAQGIANEDAAQGIANEDAVHGIANEDAAHGIANEDAVHG
IANEDSVYDIANEDAIYDIANDTVQGTLTRMLYTTSLMRTPYKASVMRTLYMTSLTRTLY
KPSLTRTLYTTSLMTAPYKTSPMRALYTTLLMIPTRHANADTVHDIANEDSVYDIANEGA
VYDIANDTVQGTLTRTLYTTSLMRTPYKASVMRTLYTTSLTRTPYKPSLTRTLYTTSLMT
APYKTSPMRALYTTLLMIPTRHANVDAVHDIANEDTV*

# Gene chr22_87 (). 426 nt. 2 exons. 0 exons_sup. 0 %cov.
First 15678614 15679033 20.45 + 0 0 -1.76 2.42 54.32 -42.00
Terminal 15679094 15679099 -9.46 + 0 0 3.83 0.00 -0.12 -0.60
>chr22|geneid_v1.1_predicted_cDNA_87|426_NN
ATGAGGATGCTGTATATGACATCGCTAATGACACCCACAAGGCATGCTAACGAGGACGCT
GTAGACGACATTGCTTATAAGGACACCGTACAAGACATCACTAACGAGGACGCTGTATAC
GACATCGCTAATGAGGACGTTGTATATGACATCGCTAATGAGGATGCTTTACAAGACATA
GCGAATGAGGTTGCTGTATATGACATCGCTAATGAGGACATTGTATATGACATCGCTAAT
GAGGACGCTCTATACGACATCACTAATGAGGACGCTGTATACAACATCGCTAATGAGGAC
GCTGTATATGGCATCGCTAATGAGGATGCTGTATACGAATTCGCTAATAAGGACGCTGTA
TATGACATTGCTAATGAGGACACTGTACAAGACATCTGTAAAAAAGAAGATGCTGCCAAT
ATGTAG
>chr22|geneid_v1.1_predicted_protein_87|142_AA
MRMLYMTSLMTPTRHANEDAVDDIAYKDTVQDITNEDAVYDIANEDVVYDIANEDALQDI
ANEVAVYDIANEDIVYDIANEDALYDITNEDAVYNIANEDAVYGIANEDAVYEFANKDAV
YDIANEDTVQDICKKEDAANM*

# Gene chr22_93 (). 459 nt. 2 exons. 0 exons_sup. 0 %cov.
Terminal 15798864 15798902 -8.11 - 0 0 0.00 4.37 2.31 -3.90
First 15799281 15799700 19.54 - 0 0 2.42 -1.76 53.66 -42.00
>chr22|geneid_v1.1_predicted_cDNA_93|459_NN
ATGAGGATGCTGTATATGACATCGCTAATGGCATCCACAAGGCATGCTAACGAGGACGCT
GTAGACGACATTGCTTATAAGGACACCGTACAAGACATCGCTAACGAGGACGCTGTATAC
GACATCGCTAATGAGGACGTTGTATATGACATCGCTAATGAGGATGCTTTACAAGACATA
GCTAATGAGGTTGCTGTATATGACATCGCTAATGAGGACATTGTATATGACATCGCTAAT
GAGGACGCTCTATACGACATCATTAATGAGGACGCTGTATACAACATCGCTAATGAGGAC
GCTGTATATGGCATCGCTAATGAGGATGCTGTATACGAATTCGCTAATAAGGACGCTGTA
TATGACATTGCTAATGAGGACACTGTACAAGACATCTGTAAAAAAGAAGATGCTGCCAAT
GTGTCTTCCGTGCCAGTTTTGGGGGACTTCGACCTTTGA
>chr22|geneid_v1.1_predicted_protein_93|153_AA
MRMLYMTSLMASTRHANEDAVDDIAYKDTVQDIANEDAVYDIANEDVVYDIANEDALQDI
ANEVAVYDIANEDIVYDIANEDALYDIINEDAVYNIANEDAVYGIANEDAVYEFANKDAV
YDIANEDTVQDICKKEDAANVSSVPVLGDFDL*

# Gene chr22_123 (). 372 nt. 2 exons. 0 exons_sup. 0 %cov.
Terminal 17084536 17084553 -7.33 - 0 0 0.00 4.38 0.97 -1.80
First 17090926 17091279 42.98 - 0 0 0.45 -2.54 68.61 -35.40
>chr22|geneid_v1.1_predicted_cDNA_123|372_NN
ATGGTGGTCCTGGTGGTAGTGGTGGTAGTGATGGTGGTGGTGGTGGTGGTGGAAGTGATG
GTGATGGTGGTGGTGGTGGTGGTAGTGATGGTGGTGGTGGTGGTGGTGGAAGTGATGGTG
ATGGTGGTGGTGGTGGTGGTAGTGATGGTGGTGGTGGTGGTGGTGGAAGTGATGGTGATG
GTGGTGGTGGTGGTGGTAGTGATGGTGGTAGTGGTGATGGTGGTAGTGATGGTGGTTGTA
GTGATGGTGGTGGTGATGGTGGTGATGGTGGTAGTGATGGTGGTGGTGGTGGTGGTAGTG
ATGGTGATGGTGGTGGTGGTGATGGTGGTGGTGGTGGTGATGGTGGTAGTGATGGCTCCA
CTGTCCGACTAG
>chr22|geneid_v1.1_predicted_protein_123|124_AA
MVVLVVVVVVMVVVVVVEVMVMVVVVVVVMVVVVVVEVMVMVVVVVVVMVVVVVVEVMVM
VVVVVVVMVVVVMVVVMVVVVMVVVMVVMVVVMVVVVVVVMVMVVVVMVVVVVMVVVMAP
LSD*

# Gene chr22_129 (). 345 nt. 2 exons. 0 exons_sup. 0 %cov.
First 17367958 17368107 9.74 + 0 0 4.92 -2.79 24.81 -15.00
Terminal 17368140 17368334 -5.90 + 0 0 -4.76 0.00 25.03 -19.50
>chr22|geneid_v1.1_predicted_cDNA_129|345_NN
ATGGCTAAGGAGGACGCCGCCCAGGACATCGCTAACGAGGACGCCGCCCACGGCATCGCT
AACGAGGACGCCGTACACGGCATCGCTAACGAGGACTCCGTATACGGCATCGCTAATGAG
GATGCCGTATATGACATCGCTAATGACACCGACATCGCTAATGAGGACACCATACAAGGC
ATCGGTAATGAGGACGCTGTATACGACATCGCTAACGAGGACACCCTACAAGCCGTCGCT
AACAAGGACACTGTACACAACATCGCTAATGAGGGCACCATACAAGACATCACCAATGAG
GGCGCTTTATACGACATTGCTAATGATACCGACAAGGCACGCTAA
>chr22|geneid_v1.1_predicted_protein_129|115_AA
MAKEDAAQDIANEDAAHGIANEDAVHGIANEDSVYGIANEDAVYDIANDTDIANEDTIQG
IGNEDAVYDIANEDTLQAVANKDTVHNIANEGTIQDITNEGALYDIANDTDKAR*

# Gene chr22_166 (). 459 nt. 2 exons. 0 exons_sup. 0 %cov.
First 18188056 18188475 19.69 + 0 0 -1.76 2.42 53.77 -42.00
Terminal 18188854 18188892 -8.11 + 0 0 4.37 0.00 2.31 -3.90
>chr22|geneid_v1.1_predicted_cDNA_166|459_NN
ATGAGGATGCTGTATATGACATCGCTAATGGCACCCACAAGGCATGCTAACGAGGACGCT
GTAGACGACATTGCTTATAAGGACACCGTACAAGACATCGCTAACGAGGACGCTGTATAC
GACATCGCTAATGAGGACGTTGTATATGACATCGCTAATGAGGATGCTTTACAAGACATA
GCTAATGAGGTTGCTGTATATGACATCGCTAATGAGGACATTGTATATGACATCGCTAAT
GAGGACGCTCTATACGACATCACTAATGAGGACGCTGTATACAACATCGCTAATGAGGAC
GCTGTATATGGCATCGCTAATGAGGATGCTGTATACGAATTCGCTAATAAGGACGCTGTA
TATGACATTGCTAATGAGGACACTGTACAAGACATCTGTAAAAAAGAAGATGCTGCCAAT
GTGTCTTCCGTGCCAGTTTTGGGGGACTTCGACCTTTGA
>chr22|geneid_v1.1_predicted_protein_166|153_AA
MRMLYMTSLMAPTRHANEDAVDDIAYKDTVQDIANEDAVYDIANEDVVYDIANEDALQDI
ANEVAVYDIANEDIVYDIANEDALYDITNEDAVYNIANEDAVYGIANEDAVYEFANKDAV
YDIANEDTVQDICKKEDAANVSSVPVLGDFDL*

# Gene chr22_805 (). 333 nt. 3 exons. 0 exons_sup. 0 %cov.
Terminal 46198051 46198316 10.23 - 2 0 0.00 2.54 33.91 -26.60
Internal 46211949 46211979 -4.02 - 0 1 3.36 3.54 2.28 -3.10
First 46248264 46248299 -2.02 - 0 0 2.08 1.72 6.08 -3.60
>chr22|geneid_v1.1_predicted_cDNA_805|333_NN
ATGTCGCCGGACTGCTTCGTGGGTGCCAAGGTCAAGGAAGACTGTGGCTTATTAGTGATC
CCCAGTGAGGCCTCGGAATGCCCTGGAGGCCTGCGTGAGGAGCTGCGGGCGGTGGAGAAG
CTGCTGCGGGTGGTGGAGAAGCTGCTGCGGGCGGTGGATAAGCTGCTGCGGGTGGAGAAG
CTGCTGCGGGCGGTGGAGAAGCTGCTGCGGGTGGAGAAGCTGCTGCGGGCGGTGGAGAAG
CTGCTGTGGGTGGTGGAGAAGCTGCTGTGGGTGGTGGAGAAGCTGCTGCAGCGGGTTCTG
CAAGGCAGCCTGGAACGGGGAGTGAGTGGTTAG
>chr22|geneid_v1.1_predicted_protein_805|111_AA
MSPDCFVGAKVKEDCGLLVIPSEASECPGGLREELRAVEKLLRVVEKLLRAVDKLLRVEK
LLRAVEKLLRVEKLLRAVEKLLWVVEKLLWVVEKLLQRVLQGSLERGVSG*