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To build a model or representation of the family of binding sites that are known to associate
a given TF, it is very common to put together the examples, then align them and finally create
a weight matrix or a sequence logo to detect the conserved positions.
With ABS, the users can retrieve the set of motifs annotated as binding sites for a certain TF.
![](/datasets/abs2005/pics/ssites1.jpg)
Additionally, the sites can be grouped by species to detect conservations that are specific of
some species.
![](/datasets/abs2005/pics/ssites2.jpg)
The output consists of three parts:
I. The binding sites of ABS associated to this TF (of this species)
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![](/datasets/abs2005/pics/ssites3.jpg)
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-> There is a link to access directly the gene entry in which each binding site is annotated
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II. The alignment of the sites
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![](/datasets/abs2005/pics/ssites4.jpg)
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III. The sequence logo
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![](/datasets/abs2005/pics/ssites5.jpg)
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CopyRight © 2005
ABS is under GNU General Public License.
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