10 20 30 40 50 60 seq1 CTTCACAAATCAGTAGAGTAAGTACCTTAGGAATATAACATTTCAGTAGCATGCTGATAC seq2 T----------------------------------------------------------- 70 80 90 100 110 120 seq1 CAACGTTTAAACTATGGATACATATTTGAATTCCAAATTTTTCTTCAAATAATGTGATTA || || ||||| | | | | | ||||||| || | seq2 -----------------GTATATGTTTGAGTACAAGAATATTCTTCAGATGTGTGATTAG 10 20 30 40 130 140 150 160 170 seq1 GAGATTCAACCAGGAATAGACACCGAAAGAAAACTTTGCCCAAATAAGCTT-TCTGGTAT ||| |||||||| ||| | || || ||||||||| ||||||| | || |||||| | seq2 GAGTTTCAACCAAAGATAAATACTTAAGAAAAACTTTGGCCAAATACGTTTATCTGGTGT 50 60 70 80 90 100 180 190 200 210 220 230 seq1 TTCATAAGCAAGAGATTTAAGTTTTCCATTTAAGAAGCAATTG---TGAATTTTACAACA ||||||| ||||||| | |||||| |||| | |||| | || || ||||||| || seq2 TTCATAACTTAGAGATTAAGGTTTTCTATTTTAAAAGCCACTGGTGTGTATTTTACTGCA 110 120 130 140 150 160 240 250 260 270 280 290 seq1 ATAAAAAATGCAAGTGGATATTGAACAGTCTCTGCTCTGATAATTCTAAATACAGTACAG || ||| | | |||||||||| ||||||||||| |||||| || ||| |||||| seq2 ATTTTAAAAAGCAATCAATATTGAACAATCTCTGCTCTGGTAATTCCAACTACTGTACAG 170 180 190 200 210 220 300 310 320 330 340 350 seq1 TTCACGCCCCTCACAAGACACTGAACATGTGGGTCACCGGCGAGACAGTGTGGCAATATT ||||||||||||||| ||| |||| |||||||||| ||||||||| ||| |||| || seq2 TTCACGCCCCTCACAGAACAGTGAATGTGTGGGTCACTGGCGAGACAATGTAGCAACGTT 230 240 250 260 270 280 360 370 380 390 400 410 seq1 TTCCCTGTAATGTACCAAGTCTTGCCAAAGCAGTGAACA---TTATGACACAACTTTTTG |||| |||||||||||||||||||||||||||| ||| |||||||||| | ||||| seq2 TTCCTTGTAATGTACCAAGTCTTGCCAAAGCAGCAGACAGCATTATGACACACCATTTTG 290 300 310 320 330 340 420 430 440 450 460 470 seq1 TCACAGCTGGCTCCTAAT-AGGACAGTGCCAGCCAATTCAAGCCCAGTCCTTTCTGTGTT ||||| ||||||| | | ||||||||||||||||||||| ||| | ||||||||||| seq2 TCACAACTGGCTCTCAGTCAGGACAGTGCCAGCCAATTCAGGCCTGATTCTTTCTGTGTT 350 360 370 380 390 400 480 490 500 seq1 TATTCCCATCTCTCCCAAATATTTGGAA-------------------------------- |||||||| |||||||||||||||| || seq2 TATTCCCACCTCTCCCAAATATTTGAAAACTGGTGTCTTGACTTATTAGCATATTCATAA 410 420 430 440 450 460 seq1 ------------------------------------- seq2 GCTCGATGACCATAAGCCTTTTTCCTTTAACCAACCA 470 480 490 500