10 20 seq1 GATGAT----------------------------AGGGAGCTAAGTTTA----------- | | || ||| ||||| | seq2 AGCGTTCACGTTAAGAGGTATTTTTTTAGTCTTTAGAGAGAAAAGTTCAGAGCGACGCAC 10 20 30 40 50 60 30 40 seq1 ACAGAACAAT----------------------------------------TCACCTCTTT |||||| | | | ||||||| seq2 ACAGAAAAGTGATATGAAATGGGGGGGGGGGTAGGGGTGTTAAAATATGGTGGCCTCTTT 70 80 90 100 110 120 50 60 70 80 90 100 seq1 ATCTTGTGACACCTACGAGCGCATCAATTCTGTAATTGAAAAATAAAGTGCATATTTGCA || || | | |||| || || || | ||||| | | | seq2 ATTACTCGATATTTTGCAGCGTATTTCTTACGTTAGGGAAAACGC---------TCCGTA 130 140 150 160 170 110 120 130 140 150 160 seq1 GCAGCTGTACTCTCTTCAGGCTGCAAGGAGGCTTTTCCTCCCGGTAGGCTTGATTTGCAT | | | | || ||| ||||| | | | || ||| ||||||| | seq2 GTGTTTAAAATACTCTCCAGCTTCAAGGCAGGC---CGCCGCGCACAGCTCGATTTGCCT 180 190 200 210 220 170 180 190 200 210 220 seq1 TTCACTTTCACTTTCGTGGCTGGAAACTTTCTACCCACGTAGTGAGGCTAGAGGAGCCAC | |||| ||||| |||||| | || ||| ||| | | | seq2 GTGACTTCCACTTCCGTGGCGCGGAAACTTC----------------CTAAGGATGGAAA 230 240 250 260 270 230 240 250 260 270 280 seq1 CTAAAGCTGGGGCTTGACGAAGCCGGGACCGGGACC-CGATCTCCACATATGCCCGGACT || ||| || || | || | | ||| | || | | | || || seq2 CTGCAGCCTAAACTCCCACAAACTTGGGCGGTGACGACAGCCTACGCGAACCCCGTGATG 280 290 300 310 320 330 290 300 310 320 330 340 seq1 TCTTCTGCGGCCGGGTTCAGGAGTCAAAGAGGCGGGGAGACCTGCGCGACGCTGCCCCGC | || || || | | ||| ||||||| seq2 CCCCTCGCCTCCC------------------------AGGCTCCTACCCCGCAGCCCCGC 340 350 360 350 360 370 380 390 400 seq1 CCTGCGCCCGCTTCCTCCAATGTATGCTCTAGGGGGCGGGCCTCGCGGGGAGCATGGACA | | || || | | ||||||||||| || | || || | seq2 CTT-----------------TGCATACGCGGTGGGGCGGGCCTTGCTCAAACCACGGGTA 370 380 390 400 410 410 420 430 440 450 460 seq1 CGATTGGCCCTAAAGTCTTCCCCGCAAGGCCGTGGGCTGGACAGCGTGGTGACGTCGCAA ||||||| ||| || | ||||| | ||||| ||| |||| | seq2 CGATTGGTCCTTGAG-----------GAGAGGTGGGTGGATCAGCGCTGTGGCGTCATGA 420 430 440 450 460 470 480 490 500 seq1 CGCGGCGCAGGGTGAGAGCGCGCGCTTGCGGACGCGGCGGC | |||||||| | |||||||| | ||| || ||||| seq2 CCTCGCGCAGGGAAAAGGCGCGCGCCTA-GGAAGCCGCGGC 470 480 490 500