10 20 30 40 50 seq1 AATGTTGTAGAATTAATGAATGAAACAATGACACAAATGAGAGTATGTTTTCTCATGG-- ||||| || |||||| | ||||| seq2 ---------------------------------CAAATACGA--ATGTTTCCCCATGGCG 10 20 60 70 80 90 100 seq1 -TGGAGCGAAAAGGTGACAGCATCACCTCTGGTACCCCAACTCCC-------------AC ||||| | ||| || |||||| || ||||| ||| | || || seq2 GTGGAGTGGAAATGTTACAGCACCATTTCTGGCACCAGGATCTCCCACTAACACCTCGAC 30 40 50 60 70 80 110 120 130 140 150 160 seq1 CCCCTCCCCAATGCAGACAGGCTGAAAGACCGGTAGTGAGACTGGAGTTCAGCCTTCAGA | || |||| || | ||||| ||||||||||| || | || | seq2 CTCCCGCCCA-----------CTCAGAGACCCATAGTGAGACTGAAGATGCGCTCTGGCT 90 100 110 120 130 170 180 190 200 210 220 seq1 CCGGTAGTGAGACAATCCTTCAGCCGGGAGTTGGGCTCTGGGTGGCCTAGGTTGCCATGG | | |||| |||| |||||| | |||| ||||| |||||||||| seq2 CGG-------------CCTTGAGCCCAGAGTTGAGAGCTGGTTGGCCC-GGTTGCCATGA 140 150 160 170 180 230 240 250 260 270 280 seq1 CACCGCCTCGGGCTCCACCCTCTCTTGTCCCCCTCACCGCTCCCCCCCTGCAGCGGGGGT |||||||| | |||||||||||||| | |||| | | ||||| | |||| |||| seq2 CACCGCCTTGTGCTCCACCCTCTCTCGCCCCCA----CACACCCCCTCGGCAGTCAGGGT 190 200 210 220 230 290 300 310 320 330 340 seq1 TGTGGCAGCCAGTCACGTGCC-CGCCGCGTAGCCACACCTCTGCTCCTCAGAGCAATGTC ||||||||||||||||||| | | ||||| ||||||||||||| | ||| |||| ||| seq2 -ATGGCAGCCAGTCACGTGCCACACAGCGTAACCACACCTCTGCTTCCCAGCGCAAAGTC 240 250 260 270 280 290 350 360 370 380 390 400 seq1 AAGCGGTCACGTGTGATAGCAACAGATCACGTGGCTGCCATCGCCCCTCCGCCCCCTTAC ||| ||||||||| ||||||||||| ||||||||| | || ||||| || || | seq2 AAGGGGTCACGTGGGATAGCAACAGGTCACGTGGCCGTCAGGGCCCCGCCCCCTTCCCCA 300 310 320 330 340 350 410 420 430 440 450 460 seq1 ACTCTTCGCCCTCCTCCCAGTCGAAGCACCTCCTGTCCGCCCCTCAGCGCATGGGTGGCG | | | ||||||| || ||||| | | ||| | ||||| ||||| | seq2 -----CCACACCCCTCCCA-TCAAAGCAGCC--CGGGTTGCCCACTGCGCAAGGGTGAAG 360 370 380 390 400 470 480 490 seq1 GTCACGTGCCCAGAACGTCCGGCGTTCGCCCCGCCC------------------------ ||||||| ||||||||||||||| |||||||||| seq2 ATCACGTGTCCAGAACGTCCGGCGCCCGCCCCGCCCCCCGGGTTTCCGCGCGCCTCTCTG 410 420 430 440 450 460 seq1 --------------------------------- seq2 GCAGCTGGTCACATGGTGAGGGTGGGGGTGAGG 470 480 490 500