10 20 30 seq1 GTATATGTGTGTGTGCATGCGTGAGTACTTGTGTGT------------------------ | | || || |||| |||||| seq2 TTCTCAGTT------CACATTTGAGACACTGTGTGCTTTATGGAAGATTCTAACTTTAAA 10 20 30 40 50 40 seq1 ----------------------------------------------------AAATTTTT | ||| || seq2 AAGATGAGAAAGACTTGGAAGCCCTATAATGAGACCCACCCCTCCCTCATACACATTCTT 60 70 80 90 100 110 50 60 70 80 90 100 seq1 CATTATCTATAGGTAAAAGCACACTTGGAATTAGCAATAGATGCAATTTGGGACTTAACT ||||| || || |||||||| | |||| || | ||| |||||||| | |||| || seq2 CATTACCTGTACATAAAAGCATATTTGGGATGAACAACCTATGCAATTCAGTTCTTAGCT 120 130 140 150 160 170 110 120 130 140 150 160 seq1 CTTTCAGTATGTCTTATTTCTAAGCAAAGTATTTAGTTTGGTTAGTAATTACTAAACACT ||| | | || | | ||| | || ||| seq2 -TTTAAATGTGGCATGCTTCCATGCCAAGG------------------------------ 180 190 200 170 180 190 200 210 220 seq1 GAGAACTAAATTGCAAACACCAAGAACTAAAATGTTCAAGTGGGAAATTACAGTTAAATA | ||| ||||| |||| ||||| | seq2 --------------------CCCACACTGAAATGCTCAAATGGGAGA------------- 210 220 230 230 240 250 260 270 280 seq1 CCATGGTAATGAATAAAAGGTACAAATCGTTTAAACTCTTATGTAAAATTTGATAAGATG |||| | |||| ||||||||||||||||| | | seq2 ----------------------CAAAGAGATTAAGCTCTTATGTAAAATTTGCT-----G 240 250 260 290 300 310 320 seq1 TTTTACACAACTTTAATACATTGACAAGGTCTTGTGGA---------------------- ||||||| ||||||||| || ||||| |||||||| | seq2 TTTTACATAACTTTAATGAATGGACAAAGTCTTGTGCATGGGGGTGGGGGTGGGGTTAGA 270 280 290 300 310 320 330 340 350 360 370 380 seq1 -GAAAACAGTTCCAGATGGTAAATATACACAAGGGATTTAGTCAAACAATTTTTTGGCAA | ||||| ||||||||| ||| |||| |||||||||||||||||||| |||||||||| seq2 GGGGAACAGCTCCAGATGGCAAACATACGCAAGGGATTTAGTCAAACAACTTTTTGGCAA 330 340 350 360 370 380 390 400 410 420 430 440 seq1 GAATATTATGAATTTTGTAATCGGTTGGCAGCCAATGAAATACAAAGATGAGTCTAGTTA || ||||| ||||||||| || | | | |||||||||| | | | | ||| | |||| seq2 AGATGGTATGA-TTTTGTAATGGGGTAGGAACCAATGAAATGCGAGG-TAAGTATGGTTA 390 400 410 420 430 440 450 460 470 480 490 500 seq1 ATAATCTACAATTATTGGTTAAAGAAGTATATTAGTGCTAATTTCCCTCCGTTTGTCCT || ||||||| |||||||||||||||||||||||| || | | | || | seq2 ATGATCTACAGTTATTGGTTAAAGAAGTATATTAGAGCGAGTCTTTCTGCACACAGATC 450 460 470 480 490 500