10 20 30 40 50 60 seq1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN seq2 CATATGTAATCTTTGAAGGACTGGTAATGGTTTTAATCACAGGGATAGCATCTTTTTTGA 10 20 30 40 50 60 70 80 90 100 110 seq1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-------- | seq2 CAGGCAGAACAGAGCAAAGAGCCGAACCACATTGGAAATATTAATGAGGCTATTATGGAG 70 80 90 100 110 120 seq1 ------------------------------------------------------------ seq2 CGATGGCTATTGCCTATGAACTCTCTCATCATGAGTCTATACTTAGAATTCAGTTGAACT 130 140 150 160 170 180 120 130 140 seq1 -------------------------GTGTTAATCCCCAGTTGTTTTTGAAGTTGCCTGGT ||||||||||||||||||||||||||||||||||| seq2 CTGGAGAGGGGGGAGGAGCAGGGCAGTGTTAATCCCCAGTTGTTTTTGAAGTTGCCTGGT 190 200 210 220 230 240 150 160 170 180 190 200 seq1 TAGCAGGTTAGTGTCGGAACTGTCCAAAATGGAAGCACCGAATGCTTTCGGCACTGTGAC ||||||||||||||| || || |||||||||| | | ||||||||| ||| ||| seq2 TAGCAGGTTAGTGTCTAAAGTGATCAAAATGGAAACGCACAATGCTTTCCCGGCTGCGAC 250 260 270 280 290 300 210 220 230 240 250 260 seq1 TATATGTGTGTATTTTTGTTTTTAACCTGTTTGTCTTATGGACGGTCACATTCACTCTCA | | || || | ||| ||||||||||||||||||| |||| |||| ||||||||| | seq2 --TCTCTGGGTCTATTTTGTTTTAACCTGTTTGTCTTAGGGACTGTCATATTCACTCTGA 310 320 330 340 350 270 280 290 300 310 320 seq1 GAGGTGATATTTCTCCGTTTTCTTTCAAACTAGATGTTCTAGGGAGCGCTCGCTGTAATC ||||||| ||||||||| |||||||||||||||||||||| |||||| || ||||||||| seq2 GAGGTGACATTTCTCCGATTTCTTTCAAACTAGATGTTCTGGGGAGCACTAGCTGTAATC 360 370 380 390 400 410 330 340 350 360 370 380 seq1 ACTTTGGGAGACTGATGCTCCATGACAGCTAGAAGTTGGATTGAGTTTCAGTAGCTACTA |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| seq2 ACTTTGGGAGACTGATGCTCCATGACAGCTAGAAGTTGGATTGAGTTTCAGTAGCTACTA 420 430 440 450 460 470 390 400 410 420 430 440 seq1 TATATAAAGCTGGGTCGACTTATGTCACCGCACTAATTAAATGCCATCTGGGTGGCTCCT ||||||||||||||||||||||| seq2 TATATAAAGCTGGGTCGACTTAT------------------------------------- 480 490 500 450 460 470 480 490 500 seq1 CTGGGTTTTTGAGTCCATCACCCAGATCAGATCAGTCAGAGGCCAAGGAGGAG seq2 -----------------------------------------------------