Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1048698416-011057-7743 Query= NP105048.prot (1275 letters) Database: Non-redundant SwissProt sequences 122,971 sequences; 44,872,980 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
RID: 1048698416-011057-7743
Query= NP105048.prot (1275 letters)
Database: Non-redundant SwissProt sequences 122,971 sequences; 44,872,980 total letters
If you have any problems or questions with the results of this search please refer to the BLAST FAQs
Taxonomy reports
Score E Sequences producing significant alignments: (bits) Value gi|130402|sp|P11369|POL2_MOUSE Retrovirus-related POL polyp... 1617 0.0 gi|1168468|sp|P43138|APE1_RAT DNA-(apurinic or apyrimidinic... 52 1e-06 gi|113985|sp|P28352|APE1_MOUSE DNA-(apurinic or apyrimidini... 52 1e-06 Alignments
Score E Sequences producing significant alignments: (bits) Value gi|130402|sp|P11369|POL2_MOUSE Retrovirus-related POL polyp... 1617 0.0 gi|1168468|sp|P43138|APE1_RAT DNA-(apurinic or apyrimidinic... 52 1e-06 gi|113985|sp|P28352|APE1_MOUSE DNA-(apurinic or apyrimidini... 52 1e-06
>gi|130402|sp|P11369|POL2_MOUSE Retrovirus-related POL polyprotein [Contains: Reverse transcriptase ; Endonuclease] Length = 1300 Score = 1617 bits (4188), Expect = 0.0 Identities = 792/1273 (62%), Positives = 1001/1273 (78%), Gaps = 3/1273 (0%) Query: 3 GSNSHITILTLNINGLNSAIKRHRLASWIKSQDPSVCCIQETHLTCRDTHRLKIKGWRKI 62 GSN++ ++++LNINGLNS IKRHRL W+ QDP+ CC+QETHL +D H L++KGW+ I Sbjct: 29 GSNNYFSLISLNINGLNSPIKRHRLTDWLHKQDPTFCCLQETHLREKDRHYLRVKGWKTI 88 Query: 63 YQANGKQKKAGVAILVSDKTDFKPTKIKRDKEGHYIMVKGSIQQEELTILNIYAPNTGAP 122 +QANG +K+AGVAIL+SDK DF+P IK+DKEGH+I++KG I QEEL+ILNIYAPN A Sbjct: 89 FQANGLKKQAGVAILISDKIDFQPKVIKKDKEGHFILIKGKILQEELSILNIYAPNARAA 148 Query: 123 RFIKQVLSDLQRDLDSHTLIMGDFNTPLSTLDRSTRQKVNKDTQELNSALHQADLIDIYR 182 FI+ L L+ + HT+I+GDFNTPLS+ DRS +QK+N+DT +L + Q DL DIYR Sbjct: 149 TFIRDTLVKLKAYIAPHTIIVGDFNTPLSSKDRSWKQKLNRDTVKLTEVMKQMDLTDIYR 208 Query: 183 TLHPKSTEYTFFSAPHHTYSKIDHIVGSKALLSKCKRTEIITNYLSDHSAIKLELRIKNL 242 T +PK+ YTFFSAPH T+SKIDHI+G K L++ K EI+ LSDH ++L N+ Sbjct: 209 TFYPKTKGYTFFSAPHGTFSKIDHIIGHKTGLNRYKNIEIVPCILSDHHGLRLIFN-NNI 267 Query: 243 TQSRST-TWKLNNLLLSDYWLHNEMKAEIKMFFETNENKDTTYQNLWDAFKAVCRGKFIA 301 + T TWKLNN LL+D + +K EIK F E NEN+ TTY NLWD KA RGK IA Sbjct: 268 NNGKPTFTWKLNNTLLNDTLVKEGIKKEIKDFLEFNENEATTYPNLWDTMKAFLRGKLIA 327 Query: 302 LNAYKRKQERSKIDTLTSQLKELEKQEQTHSKASSRQEITKIRAELKEIETQKTLQKINE 361 L+A K+K+E + +LT+ LK LEK+E K S RQEI K+R E+ ++ET++T+Q+IN+ Sbjct: 328 LSASKKKRETAHTSSLTTHLKALEKKEANSPKRSRRQEIIKLRGEINQVETRRTIQRINQ 387 Query: 362 SRIWFFERINKIDRPLARLIKKKREKNQIDTIKNDKGDITTDPTEIQTTIREYYKHLYAN 421 +R WFFE+INKID+PLARL K R+K I+ I+N+KGDITTDP EIQ TIR +YK LY+ Sbjct: 388 TRSWFFEKINKIDKPLARLTKGHRDKILINKIRNEKGDITTDPEEIQNTIRSFYKRLYST 447 Query: 422 KLENLEEMDTFLNTYTLPTLNQEEVESLNRPITGSEIVAIINSLPTKKSPGPDGFTAEFY 481 KLENL+EMD FL+ Y +P LNQ++V+ LN PI+ EI A+INSLPTKKSPGPDGF+AEFY Sbjct: 448 KLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSLPTKKSPGPDGFSAEFY 507 Query: 482 QRYKEELVPFLLKLFQSTEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAK 541 Q +KE+L+P L KLF E EG LPNSFYEA+I LIPKP +D TK ENFRPISLMNIDAK Sbjct: 508 QTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPTKIENFRPISLMNIDAK 567 Query: 542 ILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHINRAKDKNHMIISIDA 601 ILNKILANRIQ+HIK +IH DQVGFIPGMQGWFNIRKSINVI +IN+ KDKNHMIIS+DA Sbjct: 568 ILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHYINKLKDKNHMIISLDA 627 Query: 602 EKAFDKIQQPFMLKTLNKLGIDGTYFKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGC 661 EKAFDKIQ PFM+K L + GI G Y +I+AIY KP ANI +NG+KLEA PLK+GTRQGC Sbjct: 628 EKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNGEKLEAIPLKSGTRQGC 687 Query: 662 PLSPLLFNIVLEVLARAIRQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQNLLKL 721 PLSP LFNIVLEVLARAIRQ+KEIKGIQ+GKEEVK+SL ADDMIVY+ +P S + LL L Sbjct: 688 PLSPYLFNIVLEVLARAIRQQKEIKGIQIGKEEVKISLLADDMIVYISDPKNSTRELLNL 747 Query: 722 ISNFSKVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLTRDVKDLF 781 I++F +V GYKIN KS AFLYT N+Q E +I PF+I + IKYLG+ LT++VKDL+ Sbjct: 748 INSFGEVVGYKINSNKSMAFLYTKNKQAEKEIRETTPFSIVTNNIKYLGVTLTKEVKDLY 807 Query: 782 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMTFFTELE 841 +N+K L KEIKED +WK++PCSW+GRINIVKMAILPK IYRFNAIPIK+P FF ELE Sbjct: 808 DKNFKSLKKEIKEDLRRWKDLPCSWIGRINIVKMAILPKAIYRFNAIPIKIPTQFFNELE 867 Query: 842 KTTLKFIWNQKRARIAKAILSQKNKAGGITLPDFKLYYKATVTKTAWYWYQNRDIDQWNR 901 KF+WN K+ RIAK++L K +GGIT+PD KLYY+A V KTAWYWY++R +DQWNR Sbjct: 868 GAICKFVWNNKKPRIAKSLLKDKRTSGGITMPDLKLYYRAIVIKTAWYWYRDRQVDQWNR 927 Query: 902 TEPSEIMPHIYNYLIFDKPEKNKQWGKDSLFNKWCWENWLAICRKLKLDPFLTPYTKINS 961 E E+ PH Y +LIFDK K QW KDS+FN WCW NWL CR++++DP+L+P TK+ S Sbjct: 928 IEDPEMNPHTYGHLIFDKGAKTIQWKKDSIFNNWCWHNWLLSCRRMRIDPYLSPCTKVKS 987 Query: 962 RWIKDLNVRPKTIKTLEENLGITIQDIGVGKDFMSKTPKAMATKAKIDKWDLIKLKSFCT 1021 +WIK+L+++P+T+K +EE +G +++D+G G+ F+++T A A +++IDKWDL+KL+SFC Sbjct: 988 KWIKELHIKPETLKLIEEKVGKSLEDMGTGEKFLNRTAMACAVRSRIDKWDLMKLQSFCK 1047 Query: 1022 AKETTIRANRQPTTWEKIFATYSSDKGLISRIYNELKQIYKKKTNNPIKKWAKDMNRHFS 1081 AK+T + R PT WE+IF SD+GLIS IY ELK++ +K+NNPIKKW ++N+ FS Sbjct: 1048 AKDTVNKTKRPPTDWERIFTYPKSDRGLISNIYKELKKVDFRKSNNPIKKWGSELNKEFS 1107 Query: 1082 KEDIYAAKKHMKKCSSSLAIREMQIKTTMRCHFTPVRMAIIKKSGNNRCWRGCGEIGTLL 1141 E+ A+KH+KKCS+SL IREMQIKTT+R H TPVRMA IK SG++RCWRGCGE GTLL Sbjct: 1108 PEEYRMAEKHLKKCSTSLIIREMQIKTTLRFHLTPVRMAKIKNSGDSRCWRGCGERGTLL 1167 Query: 1142 HCWWDCKLVQPLWKSVWRFLRDLELEIPFDPAIPLLGIYPKDYKSCCYKDTCTRMFIAAL 1201 HCWW+C+LVQPLWKSVWRFLR L++ +P DPAIPLLGIYP+D + KDTC+ MFIAAL Sbjct: 1168 HCWWECRLVQPLWKSVWRFLRKLDIVLPEDPAIPLLGIYPEDAPT-GKKDTCSTMFIAAL 1226 Query: 1202 FTIAKTWNQPKCPTMIDWIKKMWHIYTMEYYAAIKNDEFMSFVGTWMKLETIILSKLSQE 1261 F IA++W +P+CP+ +WI+KMW+IYTMEYY+AIK +EFM F+ WM LE IILS+++ Sbjct: 1227 FIIARSWKEPRCPSTEEWIQKMWYIYTMEYYSAIKKNEFMKFLAKWMDLEGIILSEVTHS 1286 Query: 1262 QKTKHRIFSLIGG 1274 Q+ H ++SLI G Sbjct: 1287 QRNSHNMYSLISG 1299
>gi|1168468|sp|P43138|APE1_RAT DNA-(apurinic or apyrimidinic site) lyase (AP endonuclease 1) (APEX nuclease) (APEN) Length = 317 Score = 51.6 bits (122), Expect = 1e-06 Identities = 63/268 (23%), Positives = 114/268 (42%), Gaps = 35/268 (13%) Query: 2 TGSNSHITILTLNINGLNSAIKRHRLASWIKSQDPSVCCIQETHLTCRD--THRLKIKGW 59 +G ++ + I + N++GL + IK+ L W+K + P + C+QET + ++ G Sbjct: 55 SGKSATLKICSWNVDGLRAWIKKKGL-DWVKEEAPDILCLQETKCSENKLPAELQELPGL 113 Query: 60 RKIYQA--NGKQKKAGVAILVSD---KTDFKPTKIKRDKEGHYIMVKGSIQQEELTILNI 114 Y + + K+ +GV +L K + + + D+EG I+ + E ++ Sbjct: 114 THQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVA----EFESFILVTA 169 Query: 115 YAPNTGA-------PRFIKQVLSDLQRDLDSHT--LIMGDFNTPLSTLDRSTRQKVNKDT 165 Y PN G + + +DL S ++ GD N +D + K+ Sbjct: 170 YVPNAGRGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNA 229 Query: 166 -------QELNSALHQADLIDIYRTLHPKST-EYTFFSAPHHTYSK-----IDHIVGSKA 212 Q L L D +R L+P + YTF++ + SK +D+ + S + Sbjct: 230 GFTPQERQGFGEMLQAVPLADSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHS 289 Query: 213 LLSKCKRTEIITNYL-SDHSAIKLELRI 239 LL ++I + L SDH I L L + Sbjct: 290 LLPALCDSKIRSKALGSDHCPITLYLAL 317
>gi|113985|sp|P28352|APE1_MOUSE DNA-(apurinic or apyrimidinic site) lyase (AP endonuclease 1) (APEX nuclease) (APEN) Length = 317 Score = 51.6 bits (122), Expect = 1e-06 Identities = 63/268 (23%), Positives = 114/268 (42%), Gaps = 35/268 (13%) Query: 2 TGSNSHITILTLNINGLNSAIKRHRLASWIKSQDPSVCCIQETHLTCRD--THRLKIKGW 59 +G ++ + I + N++GL + IK+ L W+K + P + C+QET + ++ G Sbjct: 55 SGKSATLKICSWNVDGLRAWIKKKGL-DWVKEEAPDILCLQETKCSENKLPAELQELPGL 113 Query: 60 RKIYQA--NGKQKKAGVAILVSD---KTDFKPTKIKRDKEGHYIMVKGSIQQEELTILNI 114 Y + + K+ +GV +L K + + + D+EG I+ + E ++ Sbjct: 114 THQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVA----EFESFVLVTA 169 Query: 115 YAPNTGA-------PRFIKQVLSDLQRDLDSHT--LIMGDFNTPLSTLDRSTRQKVNKDT 165 Y PN G + + +DL S ++ GD N +D + K+ Sbjct: 170 YVPNAGRGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNA 229 Query: 166 -------QELNSALHQADLIDIYRTLHPKST-EYTFFSAPHHTYSK-----IDHIVGSKA 212 Q L L D +R L+P + YTF++ + SK +D+ + S + Sbjct: 230 GFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHS 289 Query: 213 LLSKCKRTEIITNYL-SDHSAIKLELRI 239 LL ++I + L SDH I L L + Sbjct: 290 LLPALCDSKIRSKALGSDHCPITLYLAL 317
Database: Non-redundant SwissProt sequences Posted date: Mar 26, 2003 12:57 AM Number of letters in database: 44,872,980 Number of sequences in database: 122,971 Lambda K H 0.320 0.135 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,790,155 Number of Sequences: 122971 Number of extensions: 515132 Number of successful extensions: 1523 Number of sequences better than 1.0e-05: 3 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 1519 Number of HSP's gapped (non-prelim): 3 length of query: 1275 length of database: 4,702,838 effective HSP length: 105 effective length of query: 1170 effective length of database: 3,627,953 effective search space: 4244705010 effective search space used: 4244705010 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 115 (48.9 bits)
