BLAST 2 SEQUENCES RESULTS VERSION BLASTN 2.2.6 [Apr-09-2003]
Sequence 1 gb|U43589.1|HSU43589:1922-2922 Human obese protein (ob)
gene, partial promoter sequence Length 1001 (1 .. 1001)
Sequence 2 gb|U36238.1|MMU36238:13-1013 Mus musculus leptin gene, exon
1 and flanking sequence Length 1001 (1 .. 1001)
Score = 90.4 bits (45), Expect = 6e-15
Identities = 135/1636 (8%), Gaps = 1498/1636 (91%)
Strand = Plus / Plus
Query: 16 aataggcctgggttcctagcccattgctattccttaccagctgtggattctaaggaaagt 75
||||||||||
Sbjct: 210 aataggcctg-------------------------------------------------- 219
Query: 76 catttaacctcgctggaccttagattcctcatccctgaagcccaagggtnnnnnnnnnnn 135
Sbjct: 219 ------------------------------------------------------------ 219
Query: 136 nnnnnnnnnnnnnnnnnncaacccatcatgtaaagcggggaactacaaacgatacaggtg 195
Sbjct: 219 ------------------------------------------------------------ 219
Query: 196 aaacatgcctaccacaccactcacaggctatgatgacaaaaacgtggctacatctgggac 255
Sbjct: 219 ------------------------------------------------------------ 219
Query: 256 cannnnnnnnnnnnnactttgtacgtaggaaatacggagttgaggatggagacccacagt 315
Sbjct: 219 ------------------------------------------------------------ 219
Query: 316 at---------------------------------------------------------- 317
||
Sbjct: 220 atccagttgtttcacacctggatccctggctatctctaatccttaacaactagctgaggt 279
Query: 317 ------------------------------------------------------------ 317
Sbjct: 280 tttaagacagaaagctgaactgttctgtatctgtttcctcccattaggaacccaatgata 339
Query: 317 ------------------------------------------------------------ 317
Sbjct: 340 ttcttgccttaatgaaaaaaaaaaaaaaaaaaaacaacaaccgaaaacaacaacaacaac 399
Query: 318 ----------------------------------------------------------gt 319
||
Sbjct: 400 aaaccaaacaaacattgtttgatcagggacaggcccttgccacctgcccctgggactggt 459
Query: 320 ccagag------------------------------------------------------ 325
||||||
Sbjct: 460 ccagagcatccctaaacacacttgcgaccttcgaagcaggtgcattctgtgatgtcacag 519
Query: 325 ------------------------------------------------------------ 325
Sbjct: 520 gatgaaatgagacgactgttcttcgggtaccaaaggaagacaagttgccctgagcttggg 579
Query: 325 ------------------------------------------------------------ 325
Sbjct: 580 accagtttctcctctgagcagccaggttaggtatgcaaagagctgtcggaaaaagcagct 639
Query: 326 ---------------------------tgtccccaaaggccacagtgcccgcctggagcc 358
|||||||||
Sbjct: 640 gggagagtcctggctcactggtctccctgtccccaa------------------------ 675
Query: 359 ctccagagagcgtgcactccctggggtgccagccagagacaacttgccctgaggcttgga 418
|||||||
Sbjct: 676 ---------------------------gccagcc-------------------------- 682
Query: 419 actcgattctccgcgtgccagagaaggggtgggacttcagaacccccaaccccgcaatct 478
Sbjct: 682 ------------------------------------------------------------ 682
Query: 479 gggtcggggagcctggcgcactgcgggccgctccctctaaccctgggcttccctggcgtc 538
Sbjct: 682 ------------------------------------------------------------ 682
Query: 539 cagggccgtcggggccgagtcccgattcgctcccaccccgaagccgcgccaggaccaacg 598
Sbjct: 682 ------------------------------------------------------------ 682
Query: 599 agggcgcagccgtatgccccagcccgctccgcggagcccctcacagccacccccgccccg 658
Sbjct: 682 ------------------------------------------------------------ 682
Query: 659 accgcgccccgagcggctc------------------------------gaagcaccttc 688
|||||||| ||
Sbjct: 683 -------------------ttctgtagcctcttgctccctgcggtgctggaagcaccatc 723
Query: 689 ccaaggg--------------------------------gctggtccttgcgccatagtc 716
||||||| |||||
Sbjct: 724 ccaagggacccgtccttaaactaccgctgctcagtagctgctgg---------------- 767
Query: 717 gcgccggagcctctggagggacatcaaggatttctcgctcctaccagccacccccaaatt 776
Sbjct: 767 ------------------------------------------------------------ 767
Query: 777 tttgggaggtacccaagggtgcgcgcgtggctcctggcgcgccgaggcc----------- 825
||
Sbjct: 768 -----------------------------------------------ccggacctcgagg 780
Query: 826 -------------------------------------------------------ctccc 830
|||||
Sbjct: 781 attaccggctataccaagcgcccccaaacttgcactcgagggcgcggctgaagttctccc 840
Query: 831 tcgaggccccgcgaggtgcacactgcgggcccagggctagcagccgcccggcacgtcgct 890
|||||||
Sbjct: 841 tcgaggc----------------------------------------------------- 847
Query: 891 accctgaggggc------------------------------------------------ 902
||
Sbjct: 848 ----------gcctagaatggagcactaggttgctgctgccactgttgctggcccgctgg 897
Query: 903 --ggggcgggagctggcgct----------------------agaaatgcgccggggcct 938
|||||||||| ||||||| |
Sbjct: 898 gtggggcgggagttggcgctcgcagggactggggctggccgga----------------- 940
Query: 939 gcggggcagttgcgcaagt-------------tgtgatcgggccgctataagaggggcgg 985
||||||||||||| | |||||||||||| |
Sbjct: 941 ------cagttgcgcaagtggcactggggcagt-------------tataagaggggcag 981
Query: 986 gcaggcatggagcccc 1001
||||||||||||||||
Sbjct: 982 gcaggcatggagcccc 997
CPU time: 0.10 user secs. 0.01 sys. secs 0.11 total secs.
Lambda K H
1.39 0.747 1.38
Gapped
Lambda K H
1.39 0.747 1.38
Matrix: blastn matrix:1 -5
Gap Penalties: Existence: 5, Extension: 0
Number of Hits to DB: 3
Number of Sequences: 0
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1
length of query: 1001
length of database: 9,567,374,405
effective HSP length: 21
effective length of query: 980
effective length of database: 9,567,374,384
effective search space: 9376026896320
effective search space used: 9376026896320
T: 0
A: 0
X1: 6 (12.0 bits)
X2: 25 (50.0 bits)
S1: 12 (24.4 bits)
S2: 20 (40.4 bits)