Information
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COMMAND LINE: /rubens/dsk4/jvanheld/rsa-tools/bin/patser -A a:t c:g -m /rubens/dsk4/jvanheld/rsa-tools/public_html/tmp/patser.2001_09_14.164743.matrix -f /rubens/dsk4/jvanheld/rsa-tools/public_html/tmp/gibbs.2001_09_14.164653.seq.wconsensus -ls 0 -M 0
File containing the matrix: /rubens/dsk4/jvanheld/rsa-tools/public_html/tmp/patser.2001_09_14.164743.matrix
File containing the sequence information: /rubens/dsk4/jvanheld/rsa-tools/public_html/tmp/gibbs.2001_09_14.164653.seq.wconsensus
Type of matrix: alignment
Total pseudo-counts added to the elements of the alignment matrix: 1
Range for approximating a weight matrix with integers: 10000
Minimum score for calculating p-values: 0
Treat unrecognized symbols as discontinuities in the sequence.
Print scores greater than or equal to 0.00
***** Information for the alphabet from the command line. *****
letter 1: A (complement: T) prior frequency = 0.250000
letter 2: C (complement: G) prior frequency = 0.250000
letter 3: G (complement: C) prior frequency = 0.250000
letter 4: T (complement: A) prior frequency = 0.250000
width of the alignment matrix: 8
A | 0 0 0 0 0 0 0 0
C | 21 0 0 10 0 0 0 0
G | 0 0 22 0 16 0 0 0
T | 0 14 0 0 0 10 10 14
Information content (base e): 11.090
Sample size adjusted information content
(information content minus the average information
expected from an arbitrary alignment of random sequences): 10.097
Information content after adding pseudo-counts: 9.017
maximum score: 10.663
minimum score: -21.670
range of scores: 10.663 - -21.670 = 32.332
minimum score for calculating p-values: 0.000
maximum ln(numerically calculated p-value): -5.466
minimum ln(numerically calculated p-value): -11.090
ln(cutoff p-value) based on sample size adjusted information content: -10.097
numerically calculated cutoff score: 10.664
ln(numerically calculated cutoff p-value): -11.090
average score above numerically calculated cutoff: 10.664
CG12789 position= 88 score= 6.95 ln(p-value)= -8.79
CG12789 position= 97 score= 2.05 ln(p-value)= -5.53
CG12789 position= 194 score= 2.00 ln(p-value)= -5.50
CG12789 position= 356 score= 2.00 ln(p-value)= -5.50
CG3376 position= 86 score= 2.46 ln(p-value)= -5.81
CG3376 position= 473 score= 10.66 ln(p-value)= -11.09
CG3534 position= 40 score= 6.49 ln(p-value)= -8.15
CG3534 position= 469 score= 6.95 ln(p-value)= -8.79
CG7816 position= 72 score= 6.49 ln(p-value)= -8.15
CG7816 position= 209 score= 2.46 ln(p-value)= -5.81
CG7816 position= 223 score= 2.77 ln(p-value)= -6.20
Hrb87F position= 188 score= 3.24 ln(p-value)= -7.14
grk position= 10 score= 10.66 ln(p-value)= -11.09
grk position= 447 score= 2.46 ln(p-value)= -5.81