Information
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COMMAND LINE: /rubens/dsk4/jvanheld/rsa-tools/bin/patser -A a:t c:g -m /rubens/dsk4/jvanheld/rsa-tools/public_html/tmp/patser.2001_09_14.164535.matrix -f /rubens/dsk4/jvanheld/rsa-tools/public_html/tmp/gibbs.2001_09_14.164315.seq.wconsensus -ls 0 -M 0
File containing the matrix: /rubens/dsk4/jvanheld/rsa-tools/public_html/tmp/patser.2001_09_14.164535.matrix
File containing the sequence information: /rubens/dsk4/jvanheld/rsa-tools/public_html/tmp/gibbs.2001_09_14.164315.seq.wconsensus
Type of matrix: alignment
Total pseudo-counts added to the elements of the alignment matrix: 1
Range for approximating a weight matrix with integers: 10000
Minimum score for calculating p-values: 0
Treat unrecognized symbols as discontinuities in the sequence.
Print scores greater than or equal to 0.00
***** Information for the alphabet from the command line. *****
letter 1: A (complement: T) prior frequency = 0.250000
letter 2: C (complement: G) prior frequency = 0.250000
letter 3: G (complement: C) prior frequency = 0.250000
letter 4: T (complement: A) prior frequency = 0.250000
width of the alignment matrix: 6
A | 0 16 16 0 0 16
C | 21 0 0 10 0 0
G | 0 0 0 0 22 0
T | 0 0 0 0 0 0
Information content (base e): 8.318
Sample size adjusted information content
(information content minus the average information
expected from an arbitrary alignment of random sequences): 7.698
Information content after adding pseudo-counts: 6.940
maximum score: 8.044
minimum score: -17.124
range of scores: 8.044 - -17.124 = 25.168
minimum score for calculating p-values: 0.000
maximum ln(numerically calculated p-value): -4.489
minimum ln(numerically calculated p-value): -8.318
ln(cutoff p-value) based on sample size adjusted information content: -7.698
numerically calculated cutoff score: 8.043
ln(numerically calculated cutoff p-value): -8.318
average score above numerically calculated cutoff: 8.043
CG12789 position= 427 score= 0.16 ln(p-value)= -4.49
CG12789 position= 438 score= 4.33 ln(p-value)= -6.93
CG3376 position= 11 score= 0.16 ln(p-value)= -4.49
CG3376 position= 122 score= 0.16 ln(p-value)= -4.49
CG3376 position= 246 score= 4.33 ln(p-value)= -6.93
CG3376 position= 257 score= 0.16 ln(p-value)= -4.49
CG3376 position= 262 score= 0.16 ln(p-value)= -4.49
CG3376 position= 307 score= 0.16 ln(p-value)= -4.49
CG3376 position= 393 score= 3.87 ln(p-value)= -5.75
CG3376 position= 422 score= 0.16 ln(p-value)= -4.49
CG3376 position= 461 score= 0.16 ln(p-value)= -4.49
CG3534 position= 159 score= 0.16 ln(p-value)= -4.49
CG3534 position= 324 score= 8.04 ln(p-value)= -8.32
CG3534 position= 357 score= 3.87 ln(p-value)= -5.75
CG3534 position= 399 score= 3.56 ln(p-value)= -5.38
CG7816 position= 126 score= 8.04 ln(p-value)= -8.32
CG7816 position= 202 score= 0.16 ln(p-value)= -4.49
CG7816 position= 233 score= 0.16 ln(p-value)= -4.49
CG7816 position= 263 score= 0.16 ln(p-value)= -4.49
CG7816 position= 279 score= 0.16 ln(p-value)= -4.49
CG7816 position= 303 score= 8.04 ln(p-value)= -8.32
CG7816 position= 401 score= 0.16 ln(p-value)= -4.49
CG7816 position= 423 score= 4.33 ln(p-value)= -6.93
Hrb87F position= 62 score= 8.04 ln(p-value)= -8.32
Hrb87F position= 102 score= 0.16 ln(p-value)= -4.49
Hrb87F position= 124 score= 3.56 ln(p-value)= -5.38
Hrb87F position= 133 score= 0.16 ln(p-value)= -4.49
Hrb87F position= 196 score= 0.16 ln(p-value)= -4.49
Hrb87F position= 251 score= 0.16 ln(p-value)= -4.49
Hrb87F position= 334 score= 3.87 ln(p-value)= -5.75
Hrb87F position= 340 score= 3.87 ln(p-value)= -5.75
Hrb87F position= 382 score= 0.16 ln(p-value)= -4.49
Hrb87F position= 436 score= 0.16 ln(p-value)= -4.49
Hrb87F position= 469 score= 0.16 ln(p-value)= -4.49
grk position= 26 score= 8.04 ln(p-value)= -8.32
grk position= 196 score= 0.16 ln(p-value)= -4.49
grk position= 234 score= 0.16 ln(p-value)= -4.49
grk position= 376 score= 3.87 ln(p-value)= -5.75
grk position= 405 score= 0.16 ln(p-value)= -4.49
grk position= 414 score= 0.16 ln(p-value)= -4.49