Check Current Queue Status
Repeat sequence:
SW perc perc perc query position in query matching repeat position in repeat
score div. del. ins. sequence begin end (left) repeat class/family begin end (left) ID
606 16.8 0.0 4.4 embl:HS3112010 1380 1515 (4155) + FLAM_A SINE/Alu 25 142 (0) 1
311 28.9 28.4 1.5 embl:HS3112010 2783 2983 (2687) C MIR SINE/MIR (0) 262 8 3
459 26.1 0.0 2.6 embl:HS3112010 3984 4098 (1572) + MIR SINE/MIR 103 214 (48) 4
222 25.4 1.7 1.7 embl:HS3112010 5469 5527 (143) C MIR SINE/MIR (74) 134 76 5
213 31.1 0.0 5.4 embl:HS3112010 5569 5642 (28) C MIR SINE/MIR (187) 75 6 5
Masked Sequence:
>embl:HS3112010 U31120 Human interleukin-13 (IL-13) precursor gene, complete cds.
GGATCCCCGCTGACAATCTAGAAACAAGCAACAGACCCTCTGATGTAGCC
ATCTGTGCCGCGCCTCTCCGCACCGCCCGCCACGCCTTGGTCCCTGGAGA
CCACCCTCCAGGGCAGGGGCTGCCGCTCGGCCGGGCCCGCGGGGTCCCTC
GGCCTGACATGGCCGGTGCTGGAGCGGCACGTGCGCGCCTCGGCCCCTCG
GCCGCTCCCGCCCCTCGCCGGTGCGCACCGGCGCTCGGGGAGCCGCTGGC
CCGGGTGTCCAGCCGGCCCTTGCCCTGCCTGGCGCTCGGACCGCCACCTT
TGCCGCCCCCTCGCCAGCCTCCGCAGCTTCCAGACTGGCCGGTCTGCGCG
CCCACCCCTGCCTCCCGGACCGGCCACCGCCGGAGGCCGCGGAGGAGGGC
CCGGCCGCGCAGATCCCGCTTATCGGGCCCCATCTCCCGTTACATAAGGC
CACCCCCCTATCTCCGCGGGCCATCGCCGCCGCAACCGCCGCGCCAGCGC
CTTCTCCCACGCGCGGGGGCGCCCCTGCCCACCGCTCCCGGCAGGGCTTT
TGGTGGCCATGGGGGATAAGGGGCGTTGACTCACCCGGGCGGGGCTCCGG
GAGTTGCACAGACCAAGGTAGTTCCCCGCTCCTTCCCCCATCACGGAGAC
CCTGTGGGAGATGCCGTGGGCCCTCTACTACAGATTAGGAAACAGGCCCG
TAGAGGGGTCGCGCGGCCAAGTAGCGGCACTCCAGGCACTGGGGGCCCTC
GAGGGAAGGGGCAGACTTCTGGGAGTCAGAGCCAGCAGCTGGGCTGGGAA
GCTTCGAGTGTGGACAGAGAGGGTGGGAATGACGTTCCCTGTGGGAAGAG
AGGGTGGGCAAGCCTGGGATGCCTCTGAGCGGGAATCCAGCATGCCTTGT
GAGGAGGGTCACAAGCACACCCTTGTGAGGAGGTTGAGCCCCATCGAGGA
CAGGACGGAGGGAGCCTGAGCAGGCAGAGAGGGGGCCTGGGGAGGCGCTG
GTTCGGGGAGGAAGTGGGTAGGGGAGAAATCTTGACATCAACACCCAACA
GGCAAATGCCGTGGCCTCTGCTGTGGGGGTTTCTGGAGGACTTCTAGGAA
AACGAGGGAAGAGCAGGAAAAGGCGACATGGCTGTAGGGCCAAGCCCAGG
AGCCGCCCTCCACAGCACTCATTCTGCAGAAGGGAAATTTGAGGCCCCCA
GACGGCAGGGGTTGATCCTGCAGAGACTGGTGAGCAAAGGGGATCACCCC
AAGCCCCAGTGGCACTAGGAACACTTACAATCTCTGACCTGGACTAAGGC
TGCCAGCCTGGCCCAGTTAAGAGTTTCCCAGAAGGATGGCCCATACACTT
TAAATTAAAGGGGCCAGACACGTGCACACNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNGCTCCCAGAAAGACCTCTGAATCTTTCTGGATCTC
TCAGTGGAGACCTGGAAATCTGAACTTTGACAATCCCTCTCACAGTGGGG
CCAAGGAGGAATTAGGCAAGCCAAAAGAAGTGAACTTTACTCTTCTATTG
CCTGTTTGAATTTTGTATCCAAGCAAGTGTTACTTAAGTAATTTAAGAGA
CTGGTTCATCGAAAAAATAAAACTCCCCAAATTCCCATAGCTGGTAGACT
GTGGTCACAGCCACAGTGCACTAAGACTATCTGCTCAGCACTTCTGGTGA
CCCAAAAGGGTCTGAGGACAGGAGCTCAGAGTTGGGTCAGCTGTCCAGGT
ACTCAGGGTTGTCACAGGCAAAACTGCTGGAACTCAGGGCAGCATTGCAA
ATGCCACGCCGCTCTCAGGGCCCCTTGCCTGCCGCTGGAATTAAACCCAC
CCAGATCTTGGAAACTCTGCCCTGGACCCTTCTCAATAAGTCCATGAGAA
ATCAAACTCTTTCCTTTATGCGACACTGGATTTTCCACAAAGTAAAATCA
AGATGAGTAAAGATGTGGTTTCTAGATAGTGCCTGAAAAAGCAGAGACCA
TGGTGTCAGGCGTCACCACTTGGGCCTATAAAAGCTGCCACAAGACGCCA
AGGCCACAAGCCACCCAGCCTATGCATCCGCTCCTCAATCCTCTCCTGTT
GGCACTGGGCCTCATGGCGCTTTTGTTGACCACGGTCATTGCTCTCACTT
GCCTTGGCGGCTTTGCCTCCCCAGGCCCTGTGCCTCCCTCTACAGCCCTC
AGGGAGCTCATTGAGGAGCTGGTCAACATCACCCAGAACCAGAAGGTGAG
TGTCGGCTAGCCAGGGTCCTAGCTATGAGGGCTCCAGGGTGGGTGATTCC
CAAGATGAGGTCATGAGCAGGCTGGGCCTGGTCCTAAGATGCCTGTAGGT
CAGGAAAAATCTCCATGGACCAAGGCCCGGCCCAGCCATGAGGGAGAGAG
GAGCTGGGCTGGGGGGCTCAGCACTGTGGATGGACCTATGGAGGTGTCTG
GCAGACTCCCCAGGGACTACCTGCTCTCCTGGCCTGGCCTTGTCTGCCAC
TGCCAGCTCCTACTCAGCCATTCCTGAACAGAGGACAGCAGAGAAGGGCC
AGCACCCTCCCAGAACCATGTGGCATTTGCCAACTGGATTTTGACCATAA
CAATGCAGCCATTCTCCCCAGCACCATCATAGGCCCGCCCTTACAGGAGG
ATTCGTTAGTAGAGTCCGCTCCTTGCCCCACTNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTCACCATCAGAAGG
CAGGGCATTTAATACACCAGATCCCCACCGCCTCCCATCTGATTTGTCTT
GGTCAACAGTGGCCCAGGCCACTCCTACTTCACTCGTCCCCACCCTGGCC
CTTCCCGCAGGCCCCTGTCCTCCTGCCCTGACTATGGCAAGCCTTGCATG
CAGCTTGTCCCTTACTAGTGGTGTCAATTTTTTTCTCTCAGCTCCAAGAC
CCTAAACAGTGGGACCTCACCCCTATGCCTGCTGTTCAAAGCAGAAAACG
AAGCTCAGGAATGCTGAGGGGCTGCCAGGCCTGCCTCTGTGCCACACCAG
GGATGCTTGTGGGGCCTGTGCTGGGGCAGACCTGGCCTGGGCTGCCAGGG
CAGGCCCACAACCCCTGCCAGCACTCTGCTCACTGTCACTTTGCTCCCAC
AGGCTCCGCTCTGCAATGGCAGCATGGTATGGAGCATCAACCTGACAGCT
GGCATGGTAAGGACCTTTGGGTGCAGGGAGGATGGGGCAGAGGCTCCAGG
CCTTGGGCTTATCTTCTCTGAGCCTCCCTTCCATGGCTGGGGTTCCAAGC
AAGCTTCAAGTGCTCTCCTCCCTCCCGCCATAATCTGGCCCCTTCCCGCC
CACCACCCAGACTCACCTGCGCCAGGCATCTCAGCCCCATCTTCCTGCAG
ACTCACAAAAGGCAGCTGCCCAAGCAGGGCCTGACCCCTCGGTGTCCCCT
CCCCACAGTACTGTGCAGCCCTGGAATCCCTGATCAACGTGTCAGGCTGC
AGTGCCATCGAGAAGACCCAGAGGATGCTGAGCGGATTCTGCCCGCACAA
GGTCTCAGCTGGGGTAAGGCATCCCCCACCCTCTCACACCCACCCTGCAC
CCCCTCCTGCCAACCCTGGGCTCGCTGAAGGGAAGCTGGCTGAATATCCA
TGGTGTGTGTCCACCCAGGGGTGGGGCCATTGTGGCAGCAGGGACGTGGC
CTTCGGGATTTACAGGATCTGGGCTCAAGGGCTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
TGTGCGAGTCGTCCCGGCCTCTGGCGTTCTACTCACGTGCTGACCTCTTT
GTCCTGCAGCAGTTTTCCAGCTTGCATGTCCGAGACACCAAAATCGAGGT
GGCCCAGTTTGTAAAGGACCTGCTCTTACATTTAAAGAAACTTTTTCGCG
AGGGACGGTTCAACTGAAACTTCGAAAGCATCATTATTTGCAGAGACAGG
ACCTGACTATTGAAGTTGCAGATTCATTTTTCTTTCTGATGTCAAAAATG
TCTTGGGTAGGCGGGAAGGAGGGTTAGGGAGGGGTAAAATTCCTTAGCTT
AGACCTCAGCCTGTGCTGCCCGTCTTCAGCCTAGCCGACCTCAGCCTTCC
CCTTGCCCAGGGCTCAGCCTGGTGGGCCTCCTCTGTCCAGGGCCCTGAGC
TCGGTGGACCCAGGGATGACATGTCCCTACACCCCTCCCCTGCCCTAGAG
CACACTGTAGCATTACAGTGGGTGCCCCCCTTGCCAGACATGTGGTGGGA
CAGGGACCCACTTCACACACAGGCAACTGAGGCAGACAGCAGCTCAGGCA
CACTTCTTCTTGGTCTTATTTATTATTGTGTGTTATTTAAATGAGTGTGT
TTGTCACCGTTGGGGATTGGGGAAGACTGTGGCTGCTGGCACTTGGAGCC
AAGGGTTCAGAGACTCAGGGCCCCAGCACTAAAGCAGTGGACCCCAGGAG
TCCCTGGTAATAAGTACTGTGTACAGAATTCTGCTACCTCACTGGGGTCC
TGGGGCCTCGGAGCCTCATCCGAGGCAGGGTCAGGAGAGGGGCAGAACAG
CCGCTCCTGTCTGCCAGCCAGCAGCCAGCTCTCAGCCAACGAGTAATTTA
TTGTTTTTCCTCGTATTTAAATATTAAATATGTTAGCAAAGAGTTAATAT
ATAGAAGGGTACCTTGAACACTGGGGGAGGGGACATTGAACAAGTTGTTT
CATTGACTATCAAACTGAAGCCAGAAATAAAGTTGGTGACAGATAGGCCT
GATTGTATTTGTCTTTCATTTTGGCCTTTGGGGACACTGGTCTGTGGTCT
GAAGACTCTGAGGAGCTCTTCGGGAGGCTGGTGGGTTGGAGGAGGGGACT
GGGATGGATTACAGCGAGGGTAGGGTGCAGTGACCTGGGCTGAATGCAAG
CTAGCTCCCGAGGGTGGGGACATGGCCTGAAGGAAGCCCCACCTTCTGTC
TGCTGCACCAGCAAGGACGGAGAGGCTTGGGCCAGACTGTCAGGGTTCAA
GGAGGGCATCAGGAGCAGACGGAGACCCAGGAAGTCTCACAATCACATCT
CCTGAGGACTGGCCAGCTGTGTCTGGCACCACCCACACATCCATGTCTCC
CTCACAACCCAGGAGGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCCTCACTGGGGTCCTGGGGCCTC
AGAGCCTCATCTGAGGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTGTCC
AAATGTCACCTGTCCTGAAT
Summary:
==================================================
file name: RM2sequpload_11197
sequences: 1
total length: 5670 bp (5670 bp excl N-runs)
GC level: 57.46 %
bases masked: 585 bp ( 10.32 %)
==================================================
number of length percentage
elements* occupied of sequence
--------------------------------------------------
SINEs: 4 585 bp 10.32 %
ALUs 1 136 bp 2.40 %
MIRs 3 449 bp 7.92 %
LINEs: 0 0 bp 0.00 %
LINE1 0 0 bp 0.00 %
LINE2 0 0 bp 0.00 %
L3/CR1 0 0 bp 0.00 %
LTR elements: 0 0 bp 0.00 %
MaLRs 0 0 bp 0.00 %
ERVL 0 0 bp 0.00 %
ERV_classI 0 0 bp 0.00 %
ERV_classII 0 0 bp 0.00 %
DNA elements: 0 0 bp 0.00 %
MER1_type 0 0 bp 0.00 %
MER2_type 0 0 bp 0.00 %
Unclassified: 0 0 bp 0.00 %
Total interspersed repeats: 585 bp 10.32 %
Small RNA: 0 0 bp 0.00 %
Satellites: 0 0 bp 0.00 %
Simple repeats: 0 0 bp 0.00 %
Low complexity: 0 0 bp 0.00 %
==================================================
* most repeats fragmented by insertions or deletions
have been counted as one element
The sequence(s) were assumed to be of primate origin.
RepeatMasker version 07/07/2001 , default mode
run with cross_match version 0.990329
RepBase Update 6.3, vs 05152001