Gene Prediction and Identification

Jan-Jaap Wesselink

jjwesselink at cnio.es

Madrid, 2007

This course is based on a combination of course materials from the Genome Bioinformatics Laboratory at the PRBB

The materials have contributions from: Enrique Blanco, Josep Francesc Abril, Sergi Castellano, Robert Castelo, Genis Parra, Charles Chapple, Eduardo Eyras and Roderic Guigo

Practical exercise 1: Learning to use a genome browser

Lecture: Gene prediction in eukaryotes handout:[PDF]

Practical exercise 2: Gene finding, annotation of genomic DNA seqeunces

Web based version of this practical here

Practical exercise 3: Finding coding regions in DNA using Perl

Practical exercise 4: Comparative gene prediction using SGP

Additional info: General overview