
jabril @ ub.edu
Current Address
Planarian Lab
Dept. Genètica
Facultat de Biologia
Universitat de Barcelona
Av Diagonal, 645
08028 - Barcelona
Catalonia (Spain)
Phone: +34.934.034.795
Fax: +34.934.110.969
Previous Address
Genome Bioinformatics Lab
GRIB @ UPF/IMIM/CRG
Passeig Marítim, 37-49
08003 - Barcelona
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I graduated on 1998 in Biology (Bachelor's degree) by
Universitat de Barcelona (UB). I've spent my last years as undergraduate
collaborating with the laboratory of genome analysis at the
Grup de
Recerca en Informàtica Biomèdica (GRIB), under
Dr. Roderic Guigó supervision. I obtained the Research
competence and Advanced Studies Diploma (Diploma d'Estudis Avançats,
DEA) on 2002 by
Department of Experimental Sciences and Health (CEXS)
of Universitat Pompeu Fabra
(UPF). From late 1998, I stayed as a PhD student,
under supervision of Dr. Roderic Guigó
within the Genome Bioinformatics Lab at GRIB. I defended my PhD thesis,
entitled "Comparative Analysis of Eukaryotic Gene Sequence Features",
on May 18, 2005. On January 2006, I received a "Juan de la Cierva" post-doctoral
fellowship and I moved to the lab of Dr. Emili Saló
at the Genetics Department
of the Faculty of Biology of the Universitat de Barcelona.
On October 2006, I've got a lector position
at that department.
Although I have a degree in Biology, I also like computers, so I
have been introduced into Bioinformatics. Therefore, I consider
myself as a Computational Biologist. My main research interest focuses
on the computational analysis of the exonic structure of eukaryotic
genes, its definition, evolution and association with genetic
disorders. Gene-finding and the visualization of genomic annotations,
along with the iIntegration of highthroughput ("omics") evidences
are also within those interests.
I program in GNUawk, bash, PostScript,
Perl and a little of C and R. Now I am also learning
mySQL and PHP. I have also
skills in LaTeX and HTML, including a little bit of
Javascript and CSS. From 2000 to 2006, I've been in charge
of the
Genome Bioinformatics Lab web site. Nowadays, I'm running the
Planarian Lab web site.
I have developed several scripts and PostScript code to obtain graphical
representations from genomic annotation data-sets. The most advanced
are gff2ps and gff2aplot, both reading input as GFF
format and producing a PS output plot. gff2ps was used to
visualize different whole genome maps, including those for human, the
fruitfly and the malaria mosquito. You can now access to their web pages from
here.
I have been teaching assistant for the practicals of the
Bioinformatics course
taught at the fourth year of the curricula of the Faculty of Biology
at the Universitat Pompeu Fabra, between 2001 and
2006. Additionally, I have taught an introductory perl course for the
MSc on Bioinformatics for Health Sciences, co-directed by Universitat
Pompeu Fabra and Universitat de Barcelona, in 2004. I've also lectured seminars
on computational genomics for the
training node of the Instituto Nacional de Bioinformatica (INB).
I've participated
in the organization and presentation of the Bioinformatics stand
"Desxifrem i comparem Genomes" (Deciphering and comparing genomes)
for the Fira Viu la Ciència Contemporània
(FVCC'03, a popular science fair) organized by the Societat Catalana de Biologia,
in Barcelona in May 2003. I was also one of the organizers and
lecturers of the workshops on
"Computational Analysis of DNA Sequences" by La Caixa,
held in Barcelona (November 2003 and 2004, July 2005)
and in Madrid (June 2004). I was invited speaker on the
4th meeting
of the Sociedad Española de Genética held in El Escorial
on October 2003.
As part of the Local Organizing Committee, I have been involved in
the editorial management of paper contributions to the
Computational Biology 2005 meeting (ECCB/JBI'05), held in
Madrid, Spain (Sep. 28 to Oct. 1, 2005). I have also participated in
the organization of the
ENCODE Genome Annotation Assessment Project
(EGASP'05) workshop, held at the Wellcome Trust Sanger Institute (May
6-7, 2005).
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