org.embl.ebi.escience.scuflworkers.java.DecodeBase64 content Outputs a report of simple protein sequence information. http://moby.ucalgary.ca/moby/MOBY-Central.pl runEmbossPepstatsFromSequence inb.bsc.es Translates the GeneID gene predictions, given in GFF format, into a set of aminoacid sequences http://moby.ucalgary.ca/moby/MOBY-Central.pl translateGeneIDGFFPredictions genome.imim.es Standard (1) Converts a collection of generic sequences into FASTA sequences http://moby.ucalgary.ca/moby/MOBY-Central.pl fromGenericSequenceCollectionToFASTA genome.imim.es Query an Amino Acid sequence against InterPro. http://moby.ucalgary.ca/moby/MOBY-Central.pl searchInterPro inb.bsc.es no yes yes no no no yes no no no no yes no no no Searches a HMM profile database (Pfam) with a query sequence. Use this if you are trying to annotate an unknown sequence. http://moby.ucalgary.ca/moby/MOBY-Central.pl runHMMPfam inb.bsc.es on 10 59021 10.0 Converts a DNA FASTA sequence into a DNA sequence http://moby.ucalgary.ca/moby/MOBY-Central.pl fromFASTAToDNASequence genome.imim.es Ab initio gene prediction tool that returns the gene predictions in GFF format (GFF version 2). http://moby.ucalgary.ca/moby/MOBY-Central.pl runGeneIDGFF genome.imim.es Both Homo sapiens (suitable for mammals) Normal None None Runs gff2ps software to vizualize a set of GFF annotations maps. It returns an encoded image in JPEG format. http://moby.ucalgary.ca/moby/MOBY-Central.pl runGFF2JPEG genome.imim.es Processor to parse the datatype Pepstats_Text http://moby.ucalgary.ca/moby/MOBY-Central.pl Pepstats_Text pepstats_report Processor to parse the datatype Pepstats_Text Compares a protein sequence against a protein database and calculates the statistical significance of matches using the Basic Local Alignment Tool (BLAST). http://moby.ucalgary.ca/moby/MOBY-Central.pl runNCBIBlastp inb.bsc.es Swiss-Prot true 11 BLOSUM62 15 2 true 0.00001 0 25 Processor to parse the datatype GFF http://moby.ucalgary.ca/moby/MOBY-Central.pl GFF geneid_predictions Processor to parse the datatype GFF a string http://moby.ucalgary.ca/moby/MOBY-Central.pl String Processor to parse the datatype b64_encoded_jpeg http://moby.ucalgary.ca/moby/MOBY-Central.pl b64_encoded_jpeg image Processor to parse the datatype b64_encoded_jpeg NA sequence in FASTA format http://moby.ucalgary.ca/moby/MOBY-Central.pl FASTA_NA Processor to parse the datatype BLAST-Text http://moby.ucalgary.ca/moby/MOBY-Central.pl BLAST-Text blast_report Processor to parse the datatype BLAST-Text Processor to parse the datatype FASTA http://moby.ucalgary.ca/moby/MOBY-Central.pl FASTA sequences Processor to parse the datatype FASTA Processor to parse the datatype HMMPfam_Report http://moby.ucalgary.ca/moby/MOBY-Central.pl HMMPfam_Report hmmpfam_report Processor to parse the datatype HMMPfam_Report image/*