##gff genbank X87344 genbank polya 879 884 0.5 - 2 "polyA site" #X87344 genbank text 879 884 0.5 - 2 "polyA site" X87344 genbank 3'-utr 885 915 0.5 - 2 LMP2:6 X87344 genbank Terminal 916 1043 0.500000 - 2 LMP2:6 X87344 genbank Internal 1943 2084 0.500000 - 2 LMP2:5 X87344 genbank Internal 2314 2443 0.500000 - 0 LMP2:4 X87344 genbank Internal 3054 3185 0.500000 - 1 LMP2:3 X87344 genbank Internal 4244 4311 0.500000 - 0 LMP2:2 X87344 genbank First 6160 6219 0.500000 - 0 LMP2:1 X87344 genbank First 6813 7410 0.500000 + 0 TAP1:1 X87344 genbank Internal 7947 8061 0.500000 + 2 TAP1:2 X87344 genbank Internal 8210 8340 0.500000 + 2 TAP1:3 X87344 genbank Internal 9300 9505 0.500000 + 1 TAP1:4 X87344 genbank Internal 9932 10129 0.500000 + 1 TAP1:5 X87344 genbank Internal 11331 11459 0.500000 + 0 TAP1:6 X87344 genbank Internal 11609 11797 0.500000 + 0 TAP1:7 X87344 genbank Internal 12357 12530 0.500000 + 0 TAP1:8 X87344 genbank Internal 12774 12936 0.500000 + 0 TAP1:9 X87344 genbank Internal 13245 13381 0.500000 + 2 TAP1:10 X87344 genbank Terminal 14664 14870 0.500000 + 1 TAP1:11 X87344 genbank First 16453 16599 0.500000 + 0 LMP7:1 X87344 genbank Internal 17360 17507 0.500000 + 0 LMP7:2 X87344 genbank Internal 17666 17777 0.500000 + 2 LMP7:3 X87344 genbank Internal 18186 18315 0.500000 + 2 LMP7:4 X87344 genbank Internal 18714 18918 0.500000 + 2 LMP7:5 X87344 genbank Terminal 19402 19490 0.500000 + 2 LMP7:6 X87344 genbank First 22217 22709 0.500000 + 1 TAP2:1 X87344 genbank Internal 22799 22913 0.500000 + 2 TAP2:2 X87344 genbank Internal 24677 24807 0.500000 + 2 TAP2:3 X87344 genbank Internal 25091 25296 0.500000 + 1 TAP2:4 X87344 genbank Internal 27626 27823 0.500000 + 1 TAP2:5 X87344 genbank Internal 27989 28117 0.500000 + 0 TAP2:6 X87344 genbank Internal 29644 29832 0.500000 + 0 TAP2:7 X87344 genbank Internal 30010 30183 0.500000 + 0 TAP2:8 X87344 genbank Internal 30361 30520 0.500000 + 0 TAP2:9 X87344 genbank Internal 30914 31050 0.500000 + 2 TAP2:10 X87344 genbank Terminal 31416 31544 0.500000 + 1 TAP2:11 ##gff genbank AF100956+AF027865 genbank Terminal 856 983 0.500000 - 2 H2lmp2:6 AF100956+AF027865 genbank Internal 1721 1862 0.500000 - 2 H2lmp2:5 AF100956+AF027865 genbank Internal 2247 2376 0.500000 - 0 H2lmp2:4 AF100956+AF027865 genbank Internal 2914 3045 0.500000 - 1 H2lmp2:3 AF100956+AF027865 genbank Internal 4362 4429 0.500000 - 0 H2lmp2:2 AF100956+AF027865 genbank First 5882 5941 0.500000 - 0 H2lmp2:1 AF100956+AF027865 genbank First 6512 7037 0.500000 + 0 H2tap1:1 AF100956+AF027865 genbank Internal 7815 7929 0.500000 + 2 H2tap1:2 AF100956+AF027865 genbank Internal 8067 8197 0.500000 + 2 H2tap1:3 AF100956+AF027865 genbank Internal 9200 9405 0.500000 + 1 H2tap1:4 AF100956+AF027865 genbank Internal 9966 10163 0.500000 + 1 H2tap1:5 AF100956+AF027865 genbank Internal 11474 11602 0.500000 + 0 H2tap1:6 AF100956+AF027865 genbank Internal 11765 11953 0.500000 + 0 H2tap1:7 AF100956+AF027865 genbank Internal 12125 12298 0.500000 + 0 H2tap1:8 AF100956+AF027865 genbank Internal 12521 12683 0.500000 + 0 H2tap1:9 AF100956+AF027865 genbank Internal 13484 13620 0.500000 + 2 H2tap1:10 AF100956+AF027865 genbank Terminal 15208 15414 0.500000 + 1 H2tap1:11 AF100956+AF027865 genbank First 17038 17184 0.500000 + 0 H2-lmp7:1 AF100956+AF027865 genbank Internal 17872 18019 0.500000 + 0 H2-lmp7:2 AF100956+AF027865 genbank Internal 18210 18321 0.500000 + 2 H2-lmp7:3 AF100956+AF027865 genbank Internal 18774 18903 0.500000 + 2 H2-lmp7:4 AF100956+AF027865 genbank Internal 19344 19548 0.500000 + 2 H2-lmp7:5 AF100956+AF027865 genbank Terminal 19811 19899 0.500000 + 2 H2-lmp7:6 AF100956+AF027865 genbank First 23928 24417 0.500000 + 1 H2tap2:1 AF100956+AF027865 genbank Internal 24503 24617 0.500000 + 2 H2tap2:2 AF100956+AF027865 genbank Internal 27387 27517 0.500000 + 2 H2tap2:3 AF100956+AF027865 genbank Internal 27723 27928 0.500000 + 1 H2tap2:4 AF100956+AF027865 genbank Internal 30503 30700 0.500000 + 1 H2tap2:5 AF100956+AF027865 genbank Internal 30863 30991 0.500000 + 0 H2tap2:6 AF100956+AF027865 genbank Internal 32648 32836 0.500000 + 0 H2tap2:7 AF100956+AF027865 genbank Internal 32956 33129 0.500000 + 0 H2tap2:8 AF100956+AF027865 genbank Internal 33279 33438 0.500000 + 0 H2tap2:9 AF100956+AF027865 genbank Internal 33967 34103 0.500000 + 2 H2tap2:10 AF100956+AF027865 genbank Terminal 34547 34726 0.500000 + 1 H2tap2:11 ##gff-version 2 ##source-version ali2gff ##date Jun/03/2003 16:41:22 ## ## ali2gff -x X87344 -y AF100956+AF027865 hs-mm.sim #name1:name2 source feature beg1:beg2 end1:end2 score strand frame group comment X87344:AF100956+AF027865 sim96_LIN seqbounds 1:1 32000:35000 . . . X87344:AF100956+AF027865 sim96_LIN alignment 863:804 19762:20115 18340.000 +:+ .:. 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cumulative nmp: 0.015 X87344:AF100956+AF027865 sim96_LIN fragment 1414:1199 1435:1220 0.590 +:+ .:. ## cumulative nmp: 0.016 X87344:AF100956+AF027865 sim96_LIN fragment 1506:1221 1533:1248 0.570 +:+ .:. ## cumulative nmp: 0.017 X87344:AF100956+AF027865 sim96_LIN fragment 1696:1249 1773:1326 0.680 +:+ .:. ## cumulative nmp: 0.019 X87344:AF100956+AF027865 sim96_LIN fragment 1774:1330 1803:1359 0.670 +:+ .:. ## cumulative nmp: 0.020 X87344:AF100956+AF027865 sim96_LIN fragment 1804:1364 1830:1390 0.700 +:+ .:. ## cumulative nmp: 0.021 X87344:AF100956+AF027865 sim96_LIN fragment 1831:1456 1845:1470 0.670 +:+ .:. ## cumulative nmp: 0.022 X87344:AF100956+AF027865 sim96_LIN fragment 1846:1623 1916:1693 0.790 +:+ .:. ## cumulative nmp: 0.025 X87344:AF100956+AF027865 sim96_LIN fragment 1917:1695 2088:1866 0.830 +:+ .:. ## cumulative nmp: 0.032 X87344:AF100956+AF027865 sim96_LIN fragment 2089:1868 2108:1887 0.750 +:+ .:. ## cumulative nmp: 0.033 X87344:AF100956+AF027865 sim96_LIN fragment 2109:1891 2130:1912 0.640 +:+ .:. ## cumulative nmp: 0.034 X87344:AF100956+AF027865 sim96_LIN fragment 2131:1936 2163:1968 0.480 +:+ .:. ## cumulative nmp: 0.035 X87344:AF100956+AF027865 sim96_LIN fragment 2164:2011 2180:2027 0.760 +:+ .:. ## cumulative nmp: 0.035 X87344:AF100956+AF027865 sim96_LIN fragment 2181:2057 2194:2070 0.790 +:+ .:. ## cumulative nmp: 0.036 X87344:AF100956+AF027865 sim96_LIN fragment 2195:2134 2283:2222 0.670 +:+ .:. ## cumulative nmp: 0.039 X87344:AF100956+AF027865 sim96_LIN fragment 2290:2223 2482:2415 0.730 +:+ .:. ## cumulative nmp: 0.046 X87344:AF100956+AF027865 sim96_LIN fragment 2483:2419 2493:2429 0.910 +:+ .:. ## cumulative nmp: 0.047 X87344:AF100956+AF027865 sim96_LIN fragment 2501:2430 2509:2438 0.670 +:+ .:. ## cumulative nmp: 0.047 X87344:AF100956+AF027865 sim96_LIN fragment 2510:2444 2533:2467 0.670 +:+ .:. ## cumulative nmp: 0.048 X87344:AF100956+AF027865 sim96_LIN fragment 2541:2468 2601:2528 0.640 +:+ .:. ## cumulative nmp: 0.050 X87344:AF100956+AF027865 sim96_LIN fragment 2602:2536 2637:2571 0.530 +:+ .:. ## 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cumulative nmp: 0.062 X87344:AF100956+AF027865 sim96_LIN fragment 3009:2869 3209:3069 0.820 +:+ .:. ## cumulative nmp: 0.070 X87344:AF100956+AF027865 sim96_LIN fragment 3210:3166 3265:3221 0.480 +:+ .:. ## cumulative nmp: 0.072 X87344:AF100956+AF027865 sim96_LIN fragment 3266:3231 3286:3251 0.670 +:+ .:. ## cumulative nmp: 0.073 X87344:AF100956+AF027865 sim96_LIN fragment 3319:3252 3331:3264 0.690 +:+ .:. ## cumulative nmp: 0.073 X87344:AF100956+AF027865 sim96_LIN fragment 3346:3265 3363:3282 0.610 +:+ .:. ## cumulative nmp: 0.074 X87344:AF100956+AF027865 sim96_LIN fragment 3364:3307 3385:3328 0.550 +:+ .:. ## cumulative nmp: 0.074 X87344:AF100956+AF027865 sim96_LIN fragment 3404:3329 3430:3355 0.590 +:+ .:. ## cumulative nmp: 0.075 X87344:AF100956+AF027865 sim96_LIN fragment 3437:3356 3455:3374 0.630 +:+ .:. ## cumulative nmp: 0.076 X87344:AF100956+AF027865 sim96_LIN fragment 3464:3375 3510:3421 0.510 +:+ .:. ## cumulative nmp: 0.077 X87344:AF100956+AF027865 sim96_LIN fragment 3518:3422 3527:3431 0.700 +:+ .:. ## 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cumulative nmp: 0.098 X87344:AF100956+AF027865 sim96_LIN fragment 4221:4339 4325:4443 0.810 +:+ .:. ## cumulative nmp: 0.102 X87344:AF100956+AF027865 sim96_LIN fragment 4328:4444 4357:4473 0.700 +:+ .:. ## cumulative nmp: 0.104 X87344:AF100956+AF027865 sim96_LIN fragment 4359:4474 4393:4508 0.570 +:+ .:. ## cumulative nmp: 0.105 X87344:AF100956+AF027865 sim96_LIN fragment 4398:4509 4415:4526 0.780 +:+ .:. ## cumulative nmp: 0.105 X87344:AF100956+AF027865 sim96_LIN fragment 4419:4527 4435:4543 0.590 +:+ .:. ## cumulative nmp: 0.106 X87344:AF100956+AF027865 sim96_LIN fragment 4440:4544 4455:4559 0.560 +:+ .:. ## cumulative nmp: 0.106 X87344:AF100956+AF027865 sim96_LIN fragment 4517:4560 4548:4591 0.560 +:+ .:. ## cumulative nmp: 0.107 X87344:AF100956+AF027865 sim96_LIN fragment 4572:4592 4583:4603 0.670 +:+ .:. ## cumulative nmp: 0.108 X87344:AF100956+AF027865 sim96_LIN fragment 4624:4604 4639:4619 0.690 +:+ .:. ## cumulative nmp: 0.108 X87344:AF100956+AF027865 sim96_LIN fragment 4678:4620 4720:4662 0.470 +:+ .:. ## 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cumulative nmp: 0.125 X87344:AF100956+AF027865 sim96_LIN fragment 5300:5118 5316:5134 0.710 +:+ .:. ## cumulative nmp: 0.126 X87344:AF100956+AF027865 sim96_LIN fragment 5319:5135 5347:5163 0.550 +:+ .:. ## cumulative nmp: 0.127 X87344:AF100956+AF027865 sim96_LIN fragment 5348:5165 5363:5180 0.810 +:+ .:. ## cumulative nmp: 0.127 X87344:AF100956+AF027865 sim96_LIN fragment 5376:5181 5393:5198 0.610 +:+ .:. ## cumulative nmp: 0.128 X87344:AF100956+AF027865 sim96_LIN fragment 5404:5199 5421:5216 0.560 +:+ .:. ## cumulative nmp: 0.129 X87344:AF100956+AF027865 sim96_LIN fragment 5422:5219 5442:5239 0.480 +:+ .:. ## cumulative nmp: 0.129 X87344:AF100956+AF027865 sim96_LIN fragment 5457:5240 5466:5249 0.800 +:+ .:. ## cumulative nmp: 0.129 X87344:AF100956+AF027865 sim96_LIN fragment 5469:5250 5486:5267 0.830 +:+ .:. ## cumulative nmp: 0.130 X87344:AF100956+AF027865 sim96_LIN fragment 5503:5268 5514:5279 0.920 +:+ .:. ## cumulative nmp: 0.131 X87344:AF100956+AF027865 sim96_LIN fragment 5516:5280 5542:5306 0.520 +:+ .:. ## 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X87344:AF100956+AF027865 sim96_LIN fragment 19046:3724 19081:3759 0.670 +:+ .:. ## cumulative nmp: 0.395 X87344:AF100956+AF027865 sim96_LIN fragment 19083:3760 19107:3784 0.880 +:+ .:. ## cumulative nmp: 0.756 X87344:AF100956+AF027865 sim96_LIN alignment 8422:33675 8541:33738 248.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8422:33675 8449:33702 0.930 +:+ .:. ## cumulative nmp: 0.283 X87344:AF100956+AF027865 sim96_LIN fragment 8506:33703 8541:33738 0.750 +:+ .:. ## cumulative nmp: 0.577 X87344:AF100956+AF027865 sim96_LIN alignment 8424:33675 8541:33736 248.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8424:33675 8449:33700 0.960 +:+ .:. ## cumulative nmp: 0.277 X87344:AF100956+AF027865 sim96_LIN fragment 8506:33701 8541:33736 0.750 +:+ .:. ## cumulative nmp: 0.577 X87344:AF100956+AF027865 sim96_LIN alignment 10848:26928 10917:27004 246.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 10848:26928 10876:26956 0.790 +:+ .:. ## cumulative nmp: 0.314 X87344:AF100956+AF027865 sim96_LIN fragment 10877:26964 10917:27004 0.680 +:+ .:. ## cumulative nmp: 0.696 X87344:AF100956+AF027865 sim96_LIN alignment 10639:26917 10729:26993 242.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 10639:26917 10679:26957 0.730 +:+ .:. ## cumulative nmp: 0.356 X87344:AF100956+AF027865 sim96_LIN fragment 10694:26958 10729:26993 0.690 +:+ .:. ## cumulative nmp: 0.652 X87344:AF100956+AF027865 sim96_LIN alignment 13143:13194 13208:13259 240.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13143:13194 13208:13259 0.680 +:+ .:. ## cumulative nmp: 0.680 X87344:AF100956+AF027865 sim96_LIN alignment 13982:26951 14035:27004 240.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13982:26951 14035:27004 0.720 +:+ .:. ## cumulative nmp: 0.720 X87344:AF100956+AF027865 sim96_LIN alignment 8504:33673 8541:33710 240.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8504:33673 8541:33710 0.820 +:+ .:. ## cumulative nmp: 0.820 X87344:AF100956+AF027865 sim96_LIN alignment 8508:33675 8541:33708 240.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8508:33675 8541:33708 0.850 +:+ .:. ## cumulative nmp: 0.850 X87344:AF100956+AF027865 sim96_LIN alignment 8510:33675 8541:33706 240.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8510:33675 8541:33706 0.880 +:+ .:. ## cumulative nmp: 0.880 X87344:AF100956+AF027865 sim96_LIN alignment 8419:33674 8448:33703 240.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8419:33674 8448:33703 0.900 +:+ .:. ## cumulative nmp: 0.900 X87344:AF100956+AF027865 sim96_LIN alignment 3488:8955 3537:9004 240.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 3488:8955 3537:9004 0.740 +:+ .:. ## cumulative nmp: 0.740 X87344:AF100956+AF027865 sim96_LIN alignment 2:26921 61:26980 240.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 2:26921 61:26980 0.700 +:+ .:. ## cumulative nmp: 0.700 X87344:AF100956+AF027865 sim96_LIN alignment 20521:22071 20665:22164 238.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 20521:22071 20556:22106 0.810 +:+ .:. ## cumulative nmp: 0.245 X87344:AF100956+AF027865 sim96_LIN fragment 20593:22107 20621:22135 0.620 +:+ .:. ## cumulative nmp: 0.396 X87344:AF100956+AF027865 sim96_LIN fragment 20637:22136 20665:22164 0.790 +:+ .:. ## cumulative nmp: 0.589 X87344:AF100956+AF027865 sim96_LIN alignment 13138:13384 13202:13447 238.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13138:13384 13185:13431 0.730 +:+ .:. ## cumulative nmp: 0.548 X87344:AF100956+AF027865 sim96_LIN fragment 13187:13432 13202:13447 0.750 +:+ .:. ## cumulative nmp: 0.735 X87344:AF100956+AF027865 sim96_LIN alignment 22:7484 61:7525 236.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 22:7484 36:7498 0.870 +:+ .:. ## cumulative nmp: 0.318 X87344:AF100956+AF027865 sim96_LIN fragment 37:7501 61:7525 0.880 +:+ .:. ## cumulative nmp: 0.855 X87344:AF100956+AF027865 sim96_LIN alignment 1:22942 39:22980 230.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1:22942 39:22980 0.790 +:+ .:. ## cumulative nmp: 0.790 X87344:AF100956+AF027865 sim96_LIN alignment 21191:26946 21247:27002 230.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 21191:26946 21247:27002 0.700 +:+ .:. ## cumulative nmp: 0.700 X87344:AF100956+AF027865 sim96_LIN alignment 20124:20375 20164:20415 230.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 20124:20375 20164:20415 0.780 +:+ .:. ## cumulative nmp: 0.780 X87344:AF100956+AF027865 sim96_LIN alignment 13146:13368 13198:13420 230.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13146:13368 13198:13420 0.720 +:+ .:. ## cumulative nmp: 0.720 X87344:AF100956+AF027865 sim96_LIN alignment 13146:13129 13198:13181 230.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13146:13129 13198:13181 0.720 +:+ .:. ## cumulative nmp: 0.720 X87344:AF100956+AF027865 sim96_LIN alignment 13146:12859 13190:12903 230.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13146:12859 13190:12903 0.760 +:+ .:. ## cumulative nmp: 0.760 X87344:AF100956+AF027865 sim96_LIN alignment 8505:33676 8541:33712 230.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8505:33676 8541:33712 0.810 +:+ .:. ## cumulative nmp: 0.810 X87344:AF100956+AF027865 sim96_LIN alignment 3:22919 41:22957 230.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 3:22919 41:22957 0.790 +:+ .:. ## cumulative nmp: 0.790 X87344:AF100956+AF027865 sim96_LIN alignment 1542:26928 1621:27033 228.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1542:26928 1575:26961 0.760 +:+ .:. ## cumulative nmp: 0.278 X87344:AF100956+AF027865 sim96_LIN fragment 1576:26978 1590:26992 0.670 +:+ .:. ## cumulative nmp: 0.386 X87344:AF100956+AF027865 sim96_LIN fragment 1591:27003 1621:27033 0.770 +:+ .:. ## cumulative nmp: 0.643 X87344:AF100956+AF027865 sim96_LIN alignment 3225:26925 3279:26993 222.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 3225:26925 3250:26950 0.880 +:+ .:. ## cumulative nmp: 0.369 X87344:AF100956+AF027865 sim96_LIN fragment 3251:26963 3257:26969 1.000 +:+ .:. ## cumulative nmp: 0.482 X87344:AF100956+AF027865 sim96_LIN fragment 3258:26972 3279:26993 0.730 +:+ .:. ## cumulative nmp: 0.741 X87344:AF100956+AF027865 sim96_LIN alignment 8484:33673 8541:33730 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8484:33673 8541:33730 0.690 +:+ .:. ## cumulative nmp: 0.690 X87344:AF100956+AF027865 sim96_LIN alignment 8488:33675 8541:33728 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8488:33675 8541:33728 0.700 +:+ .:. ## cumulative nmp: 0.700 X87344:AF100956+AF027865 sim96_LIN alignment 8490:33675 8541:33726 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8490:33675 8541:33726 0.710 +:+ .:. ## cumulative nmp: 0.710 X87344:AF100956+AF027865 sim96_LIN alignment 8492:33675 8541:33724 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8492:33675 8541:33724 0.720 +:+ .:. ## cumulative nmp: 0.720 X87344:AF100956+AF027865 sim96_LIN alignment 13146:13049 13211:13114 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13146:13049 13211:13114 0.670 +:+ .:. ## cumulative nmp: 0.670 X87344:AF100956+AF027865 sim96_LIN alignment 13147:13176 13190:13219 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13147:13176 13190:13219 0.750 +:+ .:. ## cumulative nmp: 0.750 X87344:AF100956+AF027865 sim96_LIN alignment 13146:12987 13189:13030 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13146:12987 13189:13030 0.750 +:+ .:. ## cumulative nmp: 0.750 X87344:AF100956+AF027865 sim96_LIN alignment 21188:1978 21314:2121 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 21188:1978 21203:1993 0.750 +:+ .:. ## cumulative nmp: 0.089 X87344:AF100956+AF027865 sim96_LIN fragment 21207:1994 21224:2011 0.830 +:+ .:. ## cumulative nmp: 0.200 X87344:AF100956+AF027865 sim96_LIN fragment 21225:2013 21249:2037 0.720 +:+ .:. ## cumulative nmp: 0.333 X87344:AF100956+AF027865 sim96_LIN fragment 21250:2058 21285:2093 0.640 +:+ .:. ## cumulative nmp: 0.504 X87344:AF100956+AF027865 sim96_LIN fragment 21287:2094 21314:2121 0.680 +:+ .:. ## cumulative nmp: 0.645 X87344:AF100956+AF027865 sim96_LIN alignment 21212:7539 21313:7630 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 21212:7539 21252:7579 0.710 +:+ .:. ## cumulative nmp: 0.300 X87344:AF100956+AF027865 sim96_LIN fragment 21260:7580 21280:7600 0.670 +:+ .:. ## cumulative nmp: 0.445 X87344:AF100956+AF027865 sim96_LIN fragment 21284:7601 21313:7630 0.700 +:+ .:. ## cumulative nmp: 0.662 X87344:AF100956+AF027865 sim96_LIN alignment 13146:28666 13183:28703 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13146:28666 13183:28703 0.790 +:+ .:. ## cumulative nmp: 0.790 X87344:AF100956+AF027865 sim96_LIN alignment 13137:28653 13184:28700 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13137:28653 13184:28700 0.730 +:+ .:. ## cumulative nmp: 0.730 X87344:AF100956+AF027865 sim96_LIN alignment 10647:22928 10698:22979 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 10647:22928 10698:22979 0.710 +:+ .:. ## cumulative nmp: 0.710 X87344:AF100956+AF027865 sim96_LIN alignment 10634:22934 10683:22983 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 10634:22934 10683:22983 0.720 +:+ .:. ## cumulative nmp: 0.720 X87344:AF100956+AF027865 sim96_LIN alignment 10645:26927 10678:26960 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 10645:26927 10678:26960 0.820 +:+ .:. ## cumulative nmp: 0.820 X87344:AF100956+AF027865 sim96_LIN alignment 10636:26922 10673:26959 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 10636:26922 10673:26959 0.790 +:+ .:. ## cumulative nmp: 0.790 X87344:AF100956+AF027865 sim96_LIN alignment 9929:30500 10040:30611 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 9929:30500 10040:30611 0.600 +:+ .:. ## cumulative nmp: 0.600 X87344:AF100956+AF027865 sim96_LIN alignment 8494:33675 8541:33722 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8494:33675 8541:33722 0.730 +:+ .:. ## cumulative nmp: 0.730 X87344:AF100956+AF027865 sim96_LIN alignment 8498:33673 8541:33716 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8498:33673 8541:33716 0.750 +:+ .:. ## cumulative nmp: 0.750 X87344:AF100956+AF027865 sim96_LIN alignment 8502:33675 8541:33714 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8502:33675 8541:33714 0.780 +:+ .:. ## cumulative nmp: 0.780 X87344:AF100956+AF027865 sim96_LIN alignment 8518:33675 8541:33698 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8518:33675 8541:33698 0.960 +:+ .:. ## cumulative nmp: 0.960 X87344:AF100956+AF027865 sim96_LIN alignment 1375:7484 1426:7535 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1375:7484 1426:7535 0.710 +:+ .:. ## cumulative nmp: 0.710 X87344:AF100956+AF027865 sim96_LIN alignment 2:22949 39:22986 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 2:22949 39:22986 0.790 +:+ .:. ## cumulative nmp: 0.790 X87344:AF100956+AF027865 sim96_LIN alignment 2:22940 41:22979 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 2:22940 41:22979 0.780 +:+ .:. ## cumulative nmp: 0.780 X87344:AF100956+AF027865 sim96_LIN alignment 2:22927 41:22966 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 2:22927 41:22966 0.780 +:+ .:. ## cumulative nmp: 0.780 X87344:AF100956+AF027865 sim96_LIN alignment 1:22930 38:22967 220.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1:22930 38:22967 0.790 +:+ .:. ## cumulative nmp: 0.790 X87344:AF100956+AF027865 sim96_LIN alignment 13604:26933 13663:26993 218.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13604:26933 13633:26962 0.700 +:+ .:. ## cumulative nmp: 0.350 X87344:AF100956+AF027865 sim96_LIN fragment 13634:26964 13663:26993 0.770 +:+ .:. ## cumulative nmp: 0.735 X87344:AF100956+AF027865 sim96_LIN alignment 1553:1969 1621:2037 216.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1553:1969 1576:1992 0.710 +:+ .:. ## cumulative nmp: 0.247 X87344:AF100956+AF027865 sim96_LIN fragment 1578:1993 1596:2011 0.840 +:+ .:. ## cumulative nmp: 0.478 X87344:AF100956+AF027865 sim96_LIN fragment 1597:2013 1621:2037 0.720 +:+ .:. ## cumulative nmp: 0.739 X87344:AF100956+AF027865 sim96_LIN alignment 20873:22422 20972:22517 212.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 20873:22422 20909:22458 0.680 +:+ .:. ## cumulative nmp: 0.257 X87344:AF100956+AF027865 sim96_LIN fragment 20911:22459 20936:22484 0.620 +:+ .:. ## cumulative nmp: 0.421 X87344:AF100956+AF027865 sim96_LIN fragment 20940:22485 20972:22517 0.730 +:+ .:. ## cumulative nmp: 0.667 X87344:AF100956+AF027865 sim96_LIN alignment 8485:33676 8541:33732 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8485:33676 8541:33732 0.680 +:+ .:. ## cumulative nmp: 0.680 X87344:AF100956+AF027865 sim96_LIN alignment 28187:33557 28228:33613 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 28187:33557 28205:33575 0.840 +:+ .:. ## cumulative nmp: 0.326 X87344:AF100956+AF027865 sim96_LIN fragment 28206:33591 28228:33613 0.870 +:+ .:. ## cumulative nmp: 0.734 X87344:AF100956+AF027865 sim96_LIN alignment 13146:12883 13194:12931 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13146:12883 13194:12931 0.710 +:+ .:. ## cumulative nmp: 0.710 X87344:AF100956+AF027865 sim96_LIN alignment 13147:13054 13189:13096 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13147:13054 13189:13096 0.740 +:+ .:. ## cumulative nmp: 0.740 X87344:AF100956+AF027865 sim96_LIN alignment 13147:28659 13189:28701 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13147:28659 13189:28701 0.740 +:+ .:. ## cumulative nmp: 0.740 X87344:AF100956+AF027865 sim96_LIN alignment 13146:28664 13184:28702 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 13146:28664 13184:28702 0.770 +:+ .:. ## cumulative nmp: 0.770 X87344:AF100956+AF027865 sim96_LIN alignment 10634:22920 10692:22978 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 10634:22920 10692:22978 0.680 +:+ .:. ## cumulative nmp: 0.680 X87344:AF100956+AF027865 sim96_LIN alignment 8499:33676 8541:33718 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8499:33676 8541:33718 0.740 +:+ .:. ## cumulative nmp: 0.740 X87344:AF100956+AF027865 sim96_LIN alignment 3225:22917 3251:22943 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 3225:22917 3251:22943 0.890 +:+ .:. ## cumulative nmp: 0.890 X87344:AF100956+AF027865 sim96_LIN alignment 3218:22909 3250:22941 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 3218:22909 3250:22941 0.820 +:+ .:. ## cumulative nmp: 0.820 X87344:AF100956+AF027865 sim96_LIN alignment 3213:26907 3249:26943 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 3213:26907 3249:26943 0.780 +:+ .:. ## cumulative nmp: 0.780 X87344:AF100956+AF027865 sim96_LIN alignment 1546:22946 1576:22976 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1546:22946 1576:22976 0.840 +:+ .:. ## cumulative nmp: 0.840 X87344:AF100956+AF027865 sim96_LIN alignment 1:22938 41:22978 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1:22938 41:22978 0.760 +:+ .:. ## cumulative nmp: 0.760 X87344:AF100956+AF027865 sim96_LIN alignment 1:22932 41:22972 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1:22932 41:22972 0.760 +:+ .:. ## cumulative nmp: 0.760 X87344:AF100956+AF027865 sim96_LIN alignment 1:22920 41:22960 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1:22920 41:22960 0.760 +:+ .:. ## cumulative nmp: 0.760 X87344:AF100956+AF027865 sim96_LIN alignment 1:22949 37:22985 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1:22949 37:22985 0.780 +:+ .:. ## cumulative nmp: 0.780 X87344:AF100956+AF027865 sim96_LIN alignment 1:22927 37:22963 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1:22927 37:22963 0.780 +:+ .:. ## cumulative nmp: 0.780 X87344:AF100956+AF027865 sim96_LIN alignment 1:22953 33:22985 210.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 1:22953 33:22985 0.820 +:+ .:. ## cumulative nmp: 0.820 X87344:AF100956+AF027865 sim96_LIN alignment 8418:33675 8541:33742 208.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8418:33675 8449:33706 0.810 +:+ .:. ## cumulative nmp: 0.270 X87344:AF100956+AF027865 sim96_LIN fragment 8506:33707 8541:33742 0.750 +:+ .:. ## cumulative nmp: 0.551 X87344:AF100956+AF027865 sim96_LIN alignment 8426:33675 8541:33734 208.000 +:+ .:. X87344:AF100956+AF027865 sim96_LIN fragment 8426:33675 8449:33698 0.920 +:+ .:. ## cumulative nmp: 0.251 X87344:AF100956+AF027865 sim96_LIN fragment 8506:33699 8541:33734 0.750 +:+ .:. ## cumulative nmp: 0.558