geneid output format (Description)

Gene extracted from human Chromosome 22 predictions (geneid format)
# Gene 10 (Forward). 5 exons. 787 aa. Score = 39.46
   First 13358069 13358945 18.58 + 0 1  5.78  3.15 45.54  0.00 AA   1:293 gene_10
Internal 13359480 13359693  1.17 + 2 2 -2.83  0.56 18.82  0.00 AA 293:364 gene_10
Internal 13359779 13360175  4.51 + 1 0  0.30 -1.47 26.77  0.00 AA 364:496 gene_10
Internal 13368380 13368662  8.38 + 0 1  3.02  2.87 25.87  0.00 AA 497:591 gene_10
Terminal 13370754 13371343  6.83 + 2 0  6.09  0.00 21.71  0.00 AA 591:787 gene_10

>chr22|geneid_v1.2_predicted_protein_10|787_AA
MALHSPQYIFGDFSPDEFNQFFVTPRSSVELPPCSGTVLCGTQAGDKLPDGQEYRRIEFG
VNEVIEPSDTLLRTPSYSISSTLNPQAPEFILGCTASKTTPDGITKEASYGSIDQYPGCA
LALDGSSSVEAEVLENDGVSGGLGQRERKKKKKQPPGYYSCLKDGGDDSISTEALVNGHA
NSAVPNSVSAEDAEFMGDMPPSVTPRTFDSPQNSTDSVSDIVPDSPFPGALGSDTGTAGQ
QEGGPGVDFGQSCFPAGAGRDTLSRTAGAQPCVGTDTTENLGVANGQILESSVNKSSLSE
KDRQEDAEEYLGFILNGLHEEMLNLKKLLSPNNEKRAISNGPKNQSMKKSKKNKVKEARM
NGNKSVVYQQSAKESATLQPFFTLQLDIQSDKIRTVQDALESLVARESVQGYTTKTEQEV
EKSRRVTLEKLPPVLVLHLKRFVYEKTGGARSLLNILWTWKLVKNCFLQGLKIRILNATE
PIGSLQWSTITATVRRRSVPWLASESPGLPQRPPRPPAAPALTTGPDVPAAAAGSACAMG
LPTLEFSDYYLDSPDFRERLQCHQIELERTNKFIKELIKDGSLLTGALRTEQNSTTKSAF
CQPREKSGGIPWIATQSSNGQKSLGLWTTNPESSSREDATKTDAESDCQSVASVTSPGDV
SPPIDLVKKGPYGLSGLKRASASSLRSISAAEGNISYSGSIQSLTSVGSKETPKASNPDL
PPKMCRRLRLDTTSSNGYQRPGSVVAAKAQLFENVGSPKPVSSGHQAKAMYSYKGEHSVS
FPSHKE*


Description of columns (geneid format)
Type Type of predicted exon: First, Internal, Terminal or Single
Positions Start and finish positions of current exon
Score Score (reliability) of this exon
Strand Reading sense: forward or reverse
Frame Left uncomplete codon length in this exon
Remainder Right uncomplete codon length in this exon
Partial scores: Scores (log likelihood) from:
  • Score for both signals defining exon
  • Protein coding potential (exon content)
  • Homology information score (blast HSPs): provided by user
AA Amino acids corresponding to the exon translation
Key Gene identifier



Enrique Blanco Garcia © 2003