2008-07-10 11:01  talioto

        * software/geneid/param/human3isoU12.param: Updated
          human3isoU12.param

2008-07-10 10:45  talioto

        * software/geneid/: include/geneid.h, src/BuildAcceptors.c,
          src/PrintExons.c: Made filename length longer. Improved GFF3
          output

2008-03-10 16:31  talioto

        * software/geneid/: include/geneid.h, src/CookingGenes.c,
          src/PrintExons.c, src/ReadExonsGFF.c, src/SortExons.c,
          src/genamic.c: modified evidence gff format, takes gff3
          optionally

2008-02-11 18:07  talioto

        * software/geneid/src/PrintExons.c: Fixed printing of forward
          strand branch point and ppt scores/positions in GFF3 output

2008-02-07 14:30  talioto

        * software/geneid/src/: BuildAcceptors.c, PrintExons.c,
          PrintSites.c, ReadExonsGFF.c: Fixed so that U2 branch points
          scoring less than 0 are used. afactor and bfactor for U2 branch
          points now used.

2007-10-19 15:26  talioto

        * software/geneid/src/: PrintExons.c, PrintSites.c: Added field 9
          tags (donor score, acceptor score, branch point and ppt scores
          and positions, and coding potential) to GFF3 output for exons,
          introns and sites.