GENE PREDICTIONS on WHOLE GENOMES


Summary

The predictions available on this page have been obtained by using the gene-finding software geneid and SGP2. SGP2 combines geneid predictions with tblastx comparison of a query genome from one species (i.e. human) against an informant genome of another species (i.e. from mouse).

Contents

Available precomputed whole-genome prediction data sets:

Vertebrates

Invertebrates

Forthcoming

 

Homo sapiens

geneid


Genome Version:goldenPath. March 2006 hg19 human genome assembly (GRCh37). Predictions were obtained on the masked version of the genome.
geneid Version:version_1.3.
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Version:goldenPath. March 2006 hg18 human genome assembly (NCBI Build 36). Predictions were obtained on the masked version of the genome.
geneid Version:version_1.2.
Parameter File:human3iso20060220.param
Predictions Set:Follow this link


Genome Version:goldenPath. May 2004 hg17 human genome assembly (NCBI Build 35). Predictions were obtained on the masked version of the genome.
geneid Version:version_1.2.
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Version:goldenPath. July 2003 hg16 human genome assembly (NCBI Build 34). Predictions were obtained on the masked version of the genome.
geneid Version:version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Version:goldenPath. April 2003 hg15 human genome assembly (NCBI Build 33). Predictions were obtained on the masked version of the genome.
geneid Version:version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Version:goldenPath (November 14, 2002). November 2002 hg13 human genome assembly (NCBI Build 31). Predictions were obtained on the masked version of the genome.
geneid Version:version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Version:goldenPath (June 28, 2002). June 2002 hg12 human genome assembly (NCBI Build 30). Predictions were obtained on the masked version of the genome.
geneid Version:version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Version:goldenPath (April 5, 2002). April 2002 hg11 human genome assembly (NCBI Build 29). Predictions were obtained on the masked version of the genome.
geneid Version:version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Version:goldenPath (December 22, 2001). Predictions were obtained on the masked version of the genome.
geneid Version:version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Version:Ensembl 8_30 (September 2, 2002). Predictions were obtained on the masked version of the genome.
geneid Version:version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Version:Ensembl 7_29 (July 1, 2002). Predictions were obtained on the masked version of the genome.
geneid Version:version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Version:Ensembl 4_28 (March 7, 2002). Predictions were obtained on the masked version of the genome.
geneid Version:version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link

 

sgp2 : Human vs Rat


Genome Versions: <Human> goldenPath (hg15, April 2003).
<Rat> goldenPath (rnJun2003, June, 2003).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the Human genome (hg15) against the Rat genome (rn3.1).
sgp2 Versiongeneid version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Versions: <Human> goldenPath (hg15, April 2003).
<Rat> goldenPath (rnJan2003, January, 2003).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the Human genome (hg15) against the Rat genome (rn2.1).
sgp2 Versiongeneid version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Versions: <Human> goldenPath (hg13, November 14, 2002).
<Rat> goldenPath (rnJan2003, January, 2003).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the Human genome (hg15) against the Rat genome (rn2.1).
sgp2 Versiongeneid version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Versions: <Human> goldenPath (hg12, June 28, 2002).
<Rat> goldenPath (rnNov2002, November, 2002).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the Human genome (hg12) against the Rat genome (rn2.0).
sgp2 Versiongeneid version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link

sgp2 : Human vs Mouse


Genome Versions: <Human> goldenPath (hg19, February 2009).
<Mouse> goldenPath (mm9, July 2007).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the Human genome (hg19) against the Mouse genome (mm9).
sgp2 Versiongeneid version_1.3
Parameter File:human3iso.sgp.Hs-Mm.param
Predictions Set:Follow this link


Genome Versions: <Human> goldenPath (hg18, March 2006).
<Mouse> goldenPath (mm9, July 2007).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the Human genome (hg18) against the Mouse genome (mm9).
sgp2 Versiongeneid version_1.2
Parameter File:human3iso.sgp.Hs-Mm.param
Predictions Set:Follow this link


Genome Versions: <Human> goldenPath (hg18, March 2006).
<Mouse> goldenPath (mm8, March 2006).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the Human genome (hg18) against the Mouse genome (mm8).
sgp2 Versiongeneid version_1.2
Parameter File:human3iso.sgp.Hs-Mm.param
Predictions Set:Follow this link


Genome Versions: <Human> goldenPath (hg18, March, 2006).
<Mouse> goldenPath (mm7, Aug 2005).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the Human genome (hg18) against the Mouse genome (mm7).
sgp2 Versiongeneid version_1.2
Parameter File:human3iso.sgp.Hs-Mm.param
Predictions Set:Follow this link


Genome Versions: <Human> goldenPath (hg17, May 2004).
<Mouse> goldenPath (mm7, Aug 2005).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the Human genome (hg17) against the Mouse genome (mm7).
sgp2 Versiongeneid version_1.2
Parameter File:human3iso.sgp.Hs-Mm.param
Predictions Set:Follow this link


Genome Versions: <Human> goldenPath (hg17, May 2004).
<Mouse> goldenPath (mm6, March 2005).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the Human genome (hg17) against the Mouse genome (mm6).
sgp2 Versiongeneid version_1.2
Parameter File:human3iso.sgp.Hs-Mm.param
Predictions Set:Follow this link


Genome Versions: <Human> goldenPath (hg17, May 2004).
<Mouse> goldenPath (mm5, May 2004).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the Human genome (hg17) against the Mouse genome (mm5).
sgp2 Versiongeneid version_1.2
Parameter File:human3iso.sgp.Hs-Mm.param
Predictions Set:Follow this link


Genome Versions: <Human> goldenPath (hg16, July 2003).
<Mouse> goldenPath (mm4, November 2003).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the Human genome (hg16) against the Mouse genome (mm4).
sgp2 Versiongeneid version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Versions: <Human> goldenPath (hg16, July 2003).
<Mouse> goldenPath (February, 2003).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the Human genome (hg16) against the Mouse genome (mm3.1).
sgp2 Versiongeneid version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Versions: <Human> goldenPath (hg15, April 2003).
<Mouse> goldenPath (February, 2003).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the Human genome (hg15) against the Mouse genome (mm3.1).
sgp2 Versiongeneid version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Versions: <Human> goldenPath (hg13, November 14, 2002).
<Mouse> goldenPath (February, 2003).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the Human genome (hg13) against the Mouse genome (mm3.1).
sgp2 Versiongeneid version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Versions: <Human> goldenPath (hg13, November 14, 2002).
<Mouse> goldenPath (February, 2002).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the Human genome (hg13) against the Mouse genome (mm3).
sgp2 Versiongeneid version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Versions: <Human> goldenPath (hg12, June 28, 2002).
<Mouse> goldenPath (February, 2002).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the Human genome (hg12) against the Mouse genome (mm3).
sgp2 Versiongeneid version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Versions: <Human> goldenPath (December 22, 2001).
<Mouse> goldenPath (February, 2002).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the Human genome against the Mouse genome.
sgp2 Versiongeneid version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Versions: <Human> goldenPath (August 6, 2001).
<Mouse> sanger_phusion_20011109 (9th of November 2001).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the Human genome against the Mouse genome.
sgp2 Versiongeneid version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link

 

Mus musculus

geneid


Genome Version:goldenPath (mm9, July 2007). Predictions were obtained on the masked version of the genome. These are the predictions for the mm9 version of the mouse genome assembly.
geneid Version:version_1.2
Parameter File:human3iso20060220.param
Predictions Set:Follow this link


Genome Version:goldenPath (mm8, March 2006). Predictions were obtained on the masked version of the genome. These are the predictions for the mm8 version of the mouse genome assembly.
geneid Version:version_1.2
Parameter File:human3iso20060220.param
Predictions Set:Follow this link


Genome Version:goldenPath (mm7, August 2005). Predictions were obtained on the masked version of the genome. These are the predictions for the mm7 version of the mouse genome assembly.
geneid Version:version_1.2
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Version:goldenPath (mm6, March 2005). Predictions were obtained on the masked version of the genome. These are the predictions for the mm6 version of the mouse genome assembly.
geneid Version:version_1.2
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Version:goldenPath (mm5, May 2004). Predictions were obtained on the masked version of the genome. These are the predictions for the mm5 version of the mouse genome assembly.
geneid Version:version_1.2
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Version:goldenPath (mm4, November 2003). Predictions were obtained on the masked version of the genome. These are the predictions for the mm4 version of the mouse genome assembly.
geneid Version:version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Version:goldenPath (February, 2003). Predictions were obtained on the masked version of the genome. These are the predictions for the mm3.1 version of the mouse genome assembly.
geneid Version:version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Version:goldenPath (February, 2002). Predictions were obtained on the masked version of the genome. These are the predictions for the mm2 version of the mouse genome assembly.
geneid Version:version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Version:Ensembl 5_3 (1st of May 2002). Predictions were obtained on the masked version of the genome.
geneid Version:version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Version:Ensembl 4_1 (7th of March 2002). Predictions were obtained on the masked version of the genome.
geneid Version:version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link

sgp2 : Mouse vs Human


Genome Versions: <Mouse> goldenPath (mm9, July 2007).
<Human> goldenPath. March 2006 hg18 human genome assembly (NCBI Build 36).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the mouse genome (mm9) against the Human genome (hg18).
sgp2 Versiongeneid version_1.2
Parameter File:human3iso.sgp.Hs-Mm.param
Predictions Set:Follow this link


Genome Versions: <Mouse> goldenPath (mm8, March 2006).
<Human> goldenPath. March 2006 hg18 human genome assembly (NCBI Build 36).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the mouse genome (mm8) against the Human genome (hg18).
sgp2 Versiongeneid version_1.2
Parameter File:human3iso.sgp.Hs-Mm.param
Predictions Set:Follow this link


Genome Versions: <Mouse> goldenPath (mm7, August 2005).
<Human> goldenPath. March 2006 hg18 human genome assembly (NCBI Build 36).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the mouse genome (mm7) against the Human genome (hg18).
sgp2 Versiongeneid version_1.2
Parameter File:human3iso.sgp.Hs-Mm.param
Predictions Set:Follow this link


Genome Versions: <Mouse> goldenPath (mm7, August 2005).
<Human> goldenPath. May 2004 hg17 human genome assembly (NCBI Build 35).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the mouse genome (mm7) against the Human genome (hg17).
sgp2 Versiongeneid version_1.2
Parameter File:human3iso.sgp.Hs-Mm.param
Predictions Set:Follow this link


Genome Versions: <Mouse> goldenPath (mm6, March 2005).
<Human> goldenPath. May 2004 hg17 human genome assembly (NCBI Build 35).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the mouse genome (mm6) against the Human genome (hg17).
sgp2 Versiongeneid version_1.2
Parameter File:human3iso.sgp.Hs-Mm.param
Predictions Set:Follow this link


Genome Versions: <Mouse> goldenPath (mm5, May 2004).
<Human> goldenPath. May 2004 hg17 human genome assembly (NCBI Build 35).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the mouse genome (mm5) against the Human genome (hg17).
sgp2 Versiongeneid version_1.2
Parameter File:human3iso.sgp.Hs-Mm.param
Predictions Set:Follow this link


Genome Versions: <Mouse> goldenPath (mm4, November 2003).
<Human> goldenPath. July 2003 hg16 human genome assembly (NCBI Build 34).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the mouse genome (mm4) against the Human genome (hg16).
sgp2 Versiongeneid version_1.1
Parameter File:human3iso.sgp.Hs-Mm.param
Predictions Set:Follow this link


Genome Versions: <Mouse> goldenPath (February, 2003).
<Human> goldenPath. April 2003 hg15 human genome assembly (NCBI Build 33).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the mouse genome (mm3.1) against the Human genome (hg15).
sgp2 Versiongeneid version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Versions: <Mouse> goldenPath (February, 2003).
<Human> goldenPath (November 14, 2002). November 2002 hg13 human genome assembly (NCBI Build 31).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the mouse genome (mm3.1) against the Human genome (hg13).
sgp2 Versiongeneid version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Versions: <Mouse> goldenPath (February, 2002).
<Human> goldenPath (November 14, 2002). November 2002 hg13 human genome assembly (NCBI Build 31).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the mouse genome (mm3) against the Human genome (hg13).
sgp2 Versiongeneid version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Versions: <Mouse> goldenPath (February, 2002).
<Human> goldenPath (28th of June 2002). June 2002 hg12 human genome assembly (NCBI Build 30).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the Mouse genome (mm3) against the Human genome (hg12).
sgp2 Versiongeneid version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Versions: <Mouse> goldenPath (February, 2002).
<Human> goldenPath (22nd of December 2001).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the Mouse genome against the Human genome. NOTE: For SGP-evid predictions, coordinates of RefSeq genes were considered so that SGP2 (geneid) would not make any predictions in those regions. This allows for SGP2 to make predictions between already known (RefSeq) genes with higher accuracy.
sgp2 Versiongeneid version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Versions: <Mouse> goldenPath (February, 2002).
<Human> goldenPath (22nd of December 2001).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the mouse genome against the Human genome.
sgp2 Versiongeneid version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link

 

Rattus norvegicus

geneid


Genome Version:goldenPath (rnNov2004, Nov, 2004). Predictions were obtained on the masked version of the genome. These are the predictions for the Nov 2004 version (rn4) of the rat genome assembly.
geneid Version:version_1.2
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Version:goldenPath (rnJun2003, June, 2003). Predictions were obtained on the masked version of the genome. These are the predictions for the Jun 2003 version (3.1) of the rat genome assembly.
geneid Version:version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Version:goldenPath (rnJan2003, January, 2003). Predictions were obtained on the masked version of the genome. These are the predictions for the Jan2003 version (2.1) of the rat genome assembly.
geneid Version:version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Version:goldenPath (rnNov2002, November, 2002). Predictions were obtained on the masked version of the genome. These are the predictions for the Nov2002 version (2.0) of the rat genome assembly.
geneid Version:version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link

sgp2 : Rat vs Human


Genome Versions: <Rat> goldenPath (rnNov2004, November, 2004).
<Human> goldenPath. March 2006 hg18 human genome assembly (NCBI Build 36).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the Rat genome (rn4) against the Human (hg18) genome.
sgp2 Versiongeneid version_1.2
Parameter File:human3iso.sgp.Hs-Mm.param
Predictions Set:Follow this link


Genome Versions: <Rat> goldenPath (rnJun2003, June, 2003).
<Human> goldenPath (April 10, 2003). Predictions were obtained on the masked version of both genomes. tblastx comparison of the Rat genome against the Human genome.
sgp2 Versiongeneid version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Versions: <Rat> goldenPath (rnJan2003, January, 2003).
<Human> goldenPath (10th of April 2003).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the Rat genome against the Human genome.
sgp2 Versiongeneid version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Versions: <Rat> goldenPath (rnJan2003, January, 2003).
<Human> goldenPath (November 14, 2002).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the Rat genome against the Human genome.
sgp2 Versiongeneid version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Versions: <Rat> goldenPath (rnNov2002, November, 2002).
<Human> goldenPath (June 28, 2002).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the Rat genome against the Human genome.
sgp2 Versiongeneid version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link

 

Gallus gallus

geneid


Genome Version:goldenPath (February, 2004). Predictions were obtained on the masked version of the genome. These are the predictions for the Feb.2004 version of the Chicken genome assembly produced at the Genome Sequencing Center at Washington University in St. Louis.
geneid Version:version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link

 

sgp2 : Chicken vs Human


Genome Versions: <Chicken> goldenPath (February, 2004). These are the predictions for the Feb.2004 version of the Chicken genome assembly produced at the Genome Sequencing Center at Washington University in St. Louis.
<Human> goldenPath. May 2004 hg17 human genome assembly (NCBI Build 35).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the Chicken genome (ggalFeb2004) against the Human genome (hg17).
sgp2 Versiongeneid version_1.2
Parameter File:human3iso.sgp.Gg-Hs.param
Predictions Set:Follow this link


Genome Versions: <Chicken> goldenPath (February, 2004). These are the predictions for the Feb.2004 version of the Chicken genome assembly produced at the Genome Sequencing Center at Washington University in St. Louis.
<Human> goldenPath. July 2003 hg16 human genome assembly (NCBI Build 34).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the Chicken genome (ggalFeb2004) against the Human genome (hg16).
sgp2 Versiongeneid version_1.2
Parameter File:human3iso.sgp.Gg-Hs.param
Predictions Set:Follow this link

sgp2 : Chicken vs Human+Cow


Genome Versions: <Chicken> goldenPath (February, 2004). Predictions were obtained on the masked version of the genome. These are the predictions for the Feb.2004 version of the Chicken genome assembly produced at the Genome Sequencing Center at Washington University in St. Louis.
<Cow + Human>
Cow: goldenPath (Btau2, March 2005).
Human: goldenPath (hg17-ncbi 35-May 2004).
NOTE: These SGP2 predictions combine geneid predictions with tblastx comparison of the Chicken genome (ggalFeb2004) against the Human and Cow genomes (SRs -similarity regions- i.e. homology evidences from both species to G.gallus were combined).
sgp2 Versiongeneid version_1.2
Parameter File:human3iso.sgp.Gg-Bt_Hs.param
Predictions Set:Follow this link

 

sgp2 : Chicken vs Cow


Genome Versions: <Chicken> goldenPath (February, 2004). These are the predictions for the Feb.2004 version of the Chicken genome assembly produced at the Genome Sequencing Center at Washington University in St. Louis.
<Cow> goldenPath (Btau2, March 2005).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the Chicken genome (ggalFeb2004) against the Cow genome (Btau2).
sgp2 Versiongeneid version_1.2
Parameter File:human3iso.sgp.Gg-Bt.param
Predictions Set:Follow this link

 

Pan troglodytes

geneid


Genome Version:goldenPath (November, 2003). Predictions were obtained on the masked version of the genome. These are the predictions for the Nov. 13 2003 version of the ARACHNE assembly of the chimpanzee genome, produced by the Chimpanzee Sequencing Consortium.
geneid Version:version_1.1
Parameter File:human3iso.param
Predictions Set:Follow this link

sgp2

Sorry, no sgp2 results
available for this species.

 

Felis catus

geneid


Genome Version:goldenPath (March, 2006). Predictions were obtained on the masked version of the genome. These are the predictions for the March 2006 version of the BROAD release 3 assembly of the cat genome, produced by the Broad Institute.
geneid Version:version_1.2
Parameter File:human3iso.param
Predictions Set:Follow this link

sgp2 Cat vs Mouse


Genome Versions: <Cat> goldenPath (felCat3, March 2006).
<Mouse> goldenPath (mm8, March, 2006).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the Cat (felCat3) genome against the Mouse genome (mm8).
sgp2 Versiongeneid version_1.2
Parameter File:human3iso.sgp.Hs-Bt_NEW.param
Predictions Set:Follow this link

 

Equus caballus

geneid


Genome Version:goldenPath (equCab1, January, 2007). Predictions were obtained on the masked version of the genome. These are the predictions for the January 2007 version of the BROAD assembly of the horse genome, produced by the Broad Institute.
geneid Version:version_1.2
Parameter File:human3iso.param
Predictions Set:Follow this link

sgp2 Horse vs Mouse


Genome Versions: <Horse> goldenPath (equCab1, January 2007).
<Mouse> goldenPath (mm8, March, 2006).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the Horse (equCab1) genome against the Mouse genome (mm8).
sgp2 Versiongeneid version_1.2
Parameter File:human3iso.sgp.Hs-Mm_NEW.param
Predictions Set:Follow this link

 

Macaca mulatta

geneid


Genome Version:goldenPath (rheMac2, January, 2006). Predictions were obtained on the masked version of the genome. These are the predictions for the January 2006 version of the Baylor assembly of the rhesus monkey genome, produced by the Baylor College of Medicine Human Genome Sequencing Center.
geneid Version:version_1.2
Parameter File:human3iso.param
Predictions Set:Follow this link

sgp2 Rhesus Monkey vs Mouse


Genome Versions: <Monkey> goldenPath (rheMac2, January, 2006).
<Mouse> goldenPath (mm8, March, 2006).
Predictions were obtained on the masked version of both genomes. tblastx comparison of the Monkey (rheMac2) genome against the Mouse genome (mm8).
sgp2 Versiongeneid version_1.2
Parameter File:human3iso.sgp.Hs-Mm_NEW.param
Predictions Set:Follow this link

 

Cavia porcellus

geneid


Genome Version:goldenPath (February, 2008). Predictions were obtained on the masked version of the genome. These are the predictions for the Feb 2008 assembly of the guinea pig genome (cavPor3) obtained from the Broad Institute.
geneid Version:version_1.3
Parameter File:human3iso.param
Predictions Set:Follow this link

sgp2

Sorry, no sgp2 results
available for this species.

 

Loxodonta africana

geneid


Genome Version:goldenPath (May, 2005). Predictions were obtained on the masked version of the genome. These are the predictions for the May 2005 assembly of the elephant genome (loxAfr1) obtained from the Broad Institute.
geneid Version:version_1.2
Parameter File:human3iso20060220.param
Predictions Set:Follow this link

sgp2

Sorry, no sgp2 results
available for this species.

 

Oryctolagus cuniculus

geneid


Genome Version:goldenPath (May, 2005). Predictions were obtained on the masked version of the genome. These are the predictions for the May 2005 assembly of the rabbit genome (oryCun1) obtained from the Broad Institute.
geneid Version:version_1.2
Parameter File:human3iso20060220.param
Predictions Set:Follow this link

sgp2

Sorry, no sgp2 results
available for this species.

 

Dasypus novemcinctus

geneid


Genome Version:goldenPath (May, 2005). Predictions were obtained on the masked version of the genome. These are the predictions for the May 2005 assembly of the armadillo genome (dasNov1) obtained from the Broad Institute.
geneid Version:version_1.2
Parameter File:human3iso20060220.param
Predictions Set:Follow this link

sgp2

Sorry, no sgp2 results
available for this species.

 

Echinops telfairi

geneid


Genome Version:goldenPath (July, 2005). Predictions were obtained on the masked version of the genome. These are the predictions for the July 2005 assembly of the tenrec genome (echTel1) obtained from the Broad Institute.
geneid Version:version_1.2
Parameter File:human3iso20060220.param
Predictions Set:Follow this link

sgp2

Sorry, no sgp2 results
available for this species.

 

Petromyzon marinus

geneid


Genome Version:goldenPath (March, 2007). Predictions were obtained on the masked version of the genome. These are the predictions for the March 2007 assembly of the lamprey genome (petMar1) obtained from the Genome Sequencing Center at the Washington University School of Medicine in St. Louis.
geneid Version:version_1.3
Parameter File:human3iso20060220.param
Predictions Set:Follow this link

sgp2

Sorry, no sgp2 results
available for this species.

 

Branchiostoma floridae

geneid


Genome Version:goldenPath (March, 2006). Predictions were obtained on the masked version of the genome. These are the predictions for the March 2006 assembly of the lancelet genome (braFlo1) obtained from the US DOE Joint Genome Institute (JGI).
geneid Version:version_1.3
Parameter File:human3iso20060220.param
Predictions Set:Follow this link

sgp2

Sorry, no sgp2 results
available for this species.

 

Bos taurus

geneid


Genome Version:hgsc (August, 2006). Predictions were obtained on the masked version of the genome. These are the predictions for the August 2006 Cow genome assembly (bosTau3) produced by the Baylor College of Medicine Human Genome Sequencing Center.
geneid Version:version_1.2
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Version:goldenPath (March, 2005). Predictions were obtained on the masked version of the genome. These are the predictions for the March 2005 Cow genome assembly (bosTau2) produced by the Baylor College of Medicine Human Genome Sequencing Center.
geneid Version:version_1.2
Parameter File:human3iso.param
Predictions Set:Follow this link


Genome Version:goldenPath (September, 2004). Predictions were obtained on the masked version of the genome. These are the predictions for the September 2004 Cow genome assembly (bosTau1) produced by the Baylor College of Medicine Human Genome Sequencing Center.
geneid Version:version_1.2
Parameter File:human3iso.param
Predictions Set:Follow this link

sgp2 : Cow vs Mouse


Genome Versions: <Cow> hgsc (August, 2006).
<Mouse> goldenPath (July, 2007). Predictions obtained on the masked version of both genomes.
tblastx comparison of the Mouse genome against the Cow (Btau3) genome.
sgp2 Versiongeneid version_1.2
Parameter File:human3iso.sgp.Hs-Bt.param
Predictions Set:Follow this link


Genome Versions: <Cow> hgsc (August, 2006).
<Mouse> goldenPath (March, 2006). Predictions obtained on the masked version of both genomes.
tblastx comparison of the Mouse genome against the Cow (Btau3) genome.
sgp2 Versiongeneid version_1.2
Parameter File:human3iso.sgp.Hs-Bt.param
Predictions Set:Follow this link


Genome Versions: <Cow> goldenPath (March, 2005).
<Mouse> goldenPath (March, 2005). Predictions obtained on the masked version of both genomes.
tblastx comparison of the Mouse genome against the Cow (Btau2) genome.
sgp2 Versiongeneid version_1.2
Parameter File:human3iso.sgp.Hs-Bt.param
Predictions Set:Follow this link

 

Drosophila melanogaster

geneid


Genome Version:goldenPath (April 2004). Release 4 (Apr. 2004, UCSC version dm2) assembly of the Drosophila melanogaster genome. Predictions were obtained on the unmasked version of the genome.
geneid Version:version_1.2
Parameter File:drosophilaENS.param
Predictions Set:Follow this link


Genome Version:Ensembl 4_3 (7th of March 2002). Predictions were obtained on the masked version of the genome.
geneid Version:version_1.1
Parameter File:dros.param
Predictions Set:Follow this link

sgp2

Sorry, no sgp2 results
available for this species.

 

Drosophila simulans

geneid


Genome Version:goldenPath Apr. 2005 freeze of the D. simulans genome (droSim1) from the Genome Sequencing Center at Washington University School of Medicine in St. Louis. Predictions were obtained on the unmasked version of the genome.
geneid Version:version_1.2
Parameter File:drosophilaENS.param
Predictions Set:Follow this link

sgp2

Sorry, no sgp2 results
available for this species.

 

Drosophila mojavensis

geneid


Genome Version:goldenPath. Drosophila mojavensis 11 August 2004 assembly from Agencourt. Predictions were obtained on the unmasked version of the genome.
geneid Version:version_1.2
Parameter File:drosophilaENS.param
Predictions Set:Follow this link

sgp2

Sorry, no sgp2 results
available for this species.

 

Drosophila pseudoobscura

geneid


Genome Version:goldenPath. Drosophila pseudoobscura Flybase Release 1.0 assembly (Nov. 2004). Predictions were obtained on the unmasked version of the genome.
geneid Version:version_1.2
Parameter File:drosophilaENS.param
Predictions Set:Follow this link

sgp2

Sorry, no sgp2 results
available for this species.

 

Drosophila ananassae

geneid


Genome Version:goldenPath. Drosophila ananassae 15 July 2004 assembly from TIGR. Predictions were obtained on the unmasked version of the genome.
geneid Version:version_1.2
Parameter File:drosophilaENS.param
Predictions Set:Follow this link

sgp2

Sorry, no sgp2 results
available for this species.

 

Drosophila yakuba

geneid


Genome Version:goldenPath. Apr. 2004 freeze of the D. yakuba genome (droYak1) from the Genome Sequencing Center at Washington University School of Medicine in St. Louis. Predictions were obtained on the unmasked version of the genome.
geneid Version:version_1.2
Parameter File:drosophilaENS.param
Predictions Set:Follow this link

sgp2

Sorry, no sgp2 results
available for this species.

 

Drosophila virilis

geneid


Genome Version:goldenPath. Drosophila virilis 12 July 2004 assembly from Agencourt Bioscience Corporation. Predictions were obtained on the unmasked version of the genome.
geneid Version:version_1.2
Parameter File:drosophilaENS.param
Predictions Set:Follow this link

sgp2

Sorry, no sgp2 results
available for this species.

 

Anopheles gambiae

geneid


Genome Version:goldenPath. Feb. 2003 assembly of the A. gambiae genome (anoGam1) from the International Anopheles Genome Project (version MOZ2). Predictions were obtained on the masked version of the genome.
geneid Version:version_1.2
Parameter File:drosophilaENS.param
Predictions Set:Follow this link

sgp2

Sorry, no sgp2 results
available for this species.

 

Apis mellifera

geneid


Genome Version:goldenPath. Jan. 2005 assembly of the A. mellifera genome (apiMel2) from the Baylor College of Medicine HGSC Honey Bee Genome Project. Predictions were obtained on the unmasked version of the genome.
geneid Version:version_1.2
Parameter File:BeeENS.param
Predictions Set:Follow this link

sgp2

Sorry, no sgp2 results
available for this species.

 

Tetraodon nigroviridis

geneid


Genome Version:tetNig1 (February 2004). February 2004 freeze of the Tetraodon nigroviridis version 7 (V7) genome assembly (UCSC version tetNig1) provided by Genoscope. Predictions were obtained on the masked version of the genome.
geneid Version:version_1.2
Parameter File:tetramarkov4d.param
Predictions Set:Follow this link

sgp2

Sorry, no sgp2 results
available for this species.

 

Caenorhabditis elegans

geneid


Genome Version:WS120 (March 2004). C. elegans version WS120 deposited into Wormbase as of 1 March 2004. Predictions were obtained on the masked version of the genome.
geneid Version:version_1.2
Parameter File:celegans1.2.param
Predictions Set:Follow this link

sgp2

Sorry, no sgp2 results
available for this species.

 

Fugu rubripes

geneid

Sorry, no geneid results
available for this species.

sgp2

Sorry, no sgp2 results
available for this species.

 

Dictyostelium discoideum

geneid

Sorry, no geneid results
available for this species.

sgp2

Sorry, no sgp2 results
available for this species.

 


http://genome.crg.es/genepredictions/index.php
Last updated Friday, May 22nd, 2009, 12:34:33 pm  © Genome BioInformatics Research Lab