## date Wed Jul 28 15:36:06 2004 ## source-version: geneid v 1.2 -- geneid@imim.es # Sequence chr9_random - Length = 9437411 bps # Optimal Gene Structure. 8 genes. Score = 45.46 # Gene 1 (Forward). 2 exons. 62 aa. Score = 2.50 Internal 215140 215193 1.90 + 0 0 1.29 5.48 7.09 0.00 AA 1: 18 chr9_random_1 Terminal 241987 242118 0.60 + 0 0 4.38 0.00 7.44 0.00 AA 19: 62 chr9_random_1 >chr9_random_1|geneid_v1.2_predicted_cDNA_1|186_NN CACGTCTACTCAGTATTGGTGACCAAAAAGGAGCCCGATGTGAGCGTTCTGAAGGATGAT GATCAGTCCCCAAACCATCATCTTTCAACCATCACCATCAAAAGGCCCCAGTATCTGGAG CCACACCTACCTCCTATCACATCCTACCTGCTACTCACTCCTGTGAATACCAGCCTAATG CTATAG >chr9_random_1|geneid_v1.2_predicted_protein_1|62_AA HVYSVLVTKKEPDVSVLKDDDQSPNHHLSTITIKRPQYLEPHLPPITSYLLLTPVNTSLM L* # Gene 2 (Forward). 1 exons. 67 aa. Score = 0.04 Single 379060 379260 0.04 + 0 0 2.18 0.00 10.57 0.00 AA 1: 67 chr9_random_2 >chr9_random_2|geneid_v1.2_predicted_cDNA_2|201_NN ATGGGCCATGTGGTGAGAATCTGGAGCTCACGGCGTGTCCGCAGGGGCTCTACTGATGCC ATCAAAGACCTGAGTAAAGACAGTGACAATTCTACTTCATCTCCAGCAGAGCTTGTTAGA GTCTCAAGAGAAGAAGGGACATGTCTCTGGTGTGGCCACCTGCCCCTCATGGCTTTGACT CACAATCACTATGTACCTTAG >chr9_random_2|geneid_v1.2_predicted_protein_2|67_AA MGHVVRIWSSRRVRRGSTDAIKDLSKDSDNSTSSPAELVRVSREEGTCLWCGHLPLMALT HNHYVP* # Gene 3 (Forward). 1 exons. 233 aa. Score = 18.69 Single 842404 843102 18.69 + 0 0 9.24 0.00 45.35 0.00 AA 1:233 chr9_random_3 >chr9_random_3|geneid_v1.2_predicted_cDNA_3|699_NN ATGGCCGAGACCGAGGAGCGGAGCCTGGACAACTTCTTCGCCAAGAGAGACAAGAAGAAG AAGGAACGGAGCAGTCCGGCGGCCAACGCGGCGAGCGGCATGGACGGGAGCAGTGCGGCG GCGGGCTCCAGGCCGGGCGATGGCTGGAGCTCCGGCTCTGGTGCCAGGTCGGACGACAGC GGGAGCTCGGGCTCTGGTGCTAGGTCCTTAGACAGCGGGAGAACGGGCCCCGCCGGCAAG GCCATAACGAAGGATGAAAATGAGTGGAAAGAATTTGAGCAAAGAGAGGTTGATTACAGC GGATTAAGAGTTCAGGCAATGCGAATAAGTGGAAAGGAAGATGATGATAATGAGAAGAGA GAAGATCCAGGAGATATTTGGGAAGAAGGTGGAGGTGGCAGTGGAGCAGAAAACTCTTCA GGTCCCTGGAATAAAACCGTTCGGGTACAAGCGCCTCCTGCTCCAGTAACAGTTACAGAA ACCCCGGGGCCAGCAATGCCCAGTGGTGTATTTAGGCCTCCTGAGGCAAGGCTAACCACA ACAAGGAAAACACCACAAGGACCACCGGAAATATACAGTGACACACAGTTCCCATCCCTG CAGTCCACTGCCAAGCATGTAGAGAGCCGGAAGGATAAAGAAATGGAGAAGAGCTTTGAA GTAGTAAGATACAAAAATAGAGATAGGGAGGAGGTTTAA >chr9_random_3|geneid_v1.2_predicted_protein_3|233_AA MAETEERSLDNFFAKRDKKKKERSSPAANAASGMDGSSAAAGSRPGDGWSSGSGARSDDS GSSGSGARSLDSGRTGPAGKAITKDENEWKEFEQREVDYSGLRVQAMRISGKEDDDNEKR EDPGDIWEEGGGGSGAENSSGPWNKTVRVQAPPAPVTVTETPGPAMPSGVFRPPEARLTT TRKTPQGPPEIYSDTQFPSLQSTAKHVESRKDKEMEKSFEVVRYKNRDREEV* # Gene 4 (Reverse). 2 exons. 46 aa. Score = 0.63 Terminal 1119797 1119903 -0.72 - 2 0 0.00 -0.14 10.92 0.00 AA 11: 46 chr9_random_4 First 1121582 1121612 1.34 - 0 1 2.25 4.47 5.78 0.00 AA 1: 11 chr9_random_4 >chr9_random_4|geneid_v1.2_predicted_cDNA_4|138_NN ATGGAGGACGATCGGAAGGACGCAGTCTATGCCCCAGGCCCCCAGGAATTTAACGAACCT TTCTCAGGCAAAGGTCTGACTGGGAACGCAGCAGTCCACCGAGGAGAGAAAGGCGTAGAC CGCCAGAAGGACCAGTGA >chr9_random_4|geneid_v1.2_predicted_protein_4|46_AA MEDDRKDAVYAPGPQEFNEPFSGKGLTGNAAVHRGEKGVDRQKDQ* # Gene 5 (Forward). 7 exons. 288 aa. Score = 7.91 First 5476473 5476673 -0.67 + 0 0 -1.20 4.65 6.91 0.00 AA 1: 67 chr9_random_5 Internal 5478117 5478216 -0.43 + 0 1 -0.51 1.41 11.33 0.00 AA 68:101 chr9_random_5 Internal 5483433 5483563 3.64 + 2 0 5.40 3.84 8.98 0.00 AA 101:144 chr9_random_5 Internal 5485271 5485378 0.37 + 0 0 3.79 1.42 6.86 0.00 AA 145:180 chr9_random_5 Internal 5487168 5487311 2.08 + 0 0 4.28 0.81 11.30 0.00 AA 181:228 chr9_random_5 Internal 5489708 5489852 4.05 + 0 1 4.07 4.05 11.71 0.00 AA 229:277 chr9_random_5 Terminal 5494542 5494576 -1.13 + 2 0 4.43 0.00 4.28 0.00 AA 277:288 chr9_random_5 >chr9_random_5|geneid_v1.2_predicted_cDNA_5|864_NN ATGGCATTGAATGTAGTGAATAATATAATAGCAATAGAGACAGAGTCTGTCTTTAGTGCT GGGGAGGGCACTGAGTACAAGGAAAGTGGAGAGGAAAAACTCCCCAAGGCTTGCTGTCAG CTGGGAGAGACTGGGGGAAGGGCAGCAGAGCTACAACTTTTCCCAGGCCATCCTCCTGCC ATAGAGCGGAAAGCAGATGAGAAGCCAGCGCAGACTCTTACAGAAGAAACTATATCCCTC GACCCAGAGTTAGAAGAAGCTTTGACAAGTGCTTCAGACACAGAGCTGTGCGACCTTGCA GATGTGGTTAAAGGGGAAAAGATTCTTCCAGTGTTTGATGAGCCACCAAATCCAACCAAC GTTGAAGAGAGTTTAAAGAGAATTAGGGAAAACGATGCCCGTCTTGTTGAAGTTAATTTG AATAATATAAAAAATATCCCAATTCCAACTCTAAAAGATTTTGCAAAGACTTTGGAAGCC AACACGCATGTGAAACATTTCAGTCTCGCGGCCACCAGGAGCAATGACCCCGTGGCTGTT GCTTTTGCAGATATGCTGAAAGTGAACAAAACTTTGAAGAGCTTAAATATGGAGTCCAAC TTCATCACAGGCGCAGGGGTTTTAGCACTGATTGATGCTTTGAGAGATAATGAGACCCTG ATGGAGCTCAAGATTGACAATCAGAGACAGCAGTTGGGCACCTCAGTAGAATTAGAAATG GCCAAGATGCTTGAGGAAAATACAAATATCCTTAAATTTGGATATCAGTTCACGCAGCAG GGACCCCGAACCAGGGCAGCCAACGCGATAACGAAGAACAATGACTTAGTGCGCAAGAGG CGAATTGAAGGAGACCACCAGTAA >chr9_random_5|geneid_v1.2_predicted_protein_5|288_AA MALNVVNNIIAIETESVFSAGEGTEYKESGEEKLPKACCQLGETGGRAAELQLFPGHPPA IERKADEKPAQTLTEETISLDPELEEALTSASDTELCDLADVVKGEKILPVFDEPPNPTN VEESLKRIRENDARLVEVNLNNIKNIPIPTLKDFAKTLEANTHVKHFSLAATRSNDPVAV AFADMLKVNKTLKSLNMESNFITGAGVLALIDALRDNETLMELKIDNQRQQLGTSVELEM AKMLEENTNILKFGYQFTQQGPRTRAANAITKNNDLVRKRRIEGDHQ* # Gene 6 (Reverse). 4 exons. 160 aa. Score = 12.62 Terminal 9094724 9094861 0.26 - 0 0 0.00 5.78 5.72 0.00 AA 115:160 chr9_random_6 Internal 9096839 9096979 3.78 - 0 0 1.75 5.74 11.98 0.00 AA 68:114 chr9_random_6 Internal 9097193 9097297 1.03 - 0 0 3.02 5.23 3.95 0.00 AA 33: 67 chr9_random_6 First 9133932 9134027 7.55 - 0 0 3.00 6.49 17.14 0.00 AA 1: 32 chr9_random_6 >chr9_random_6|geneid_v1.2_predicted_cDNA_6|480_NN ATGCCGGGCGAGGTGAAGGCCGACCCCGCCGCGCTCATGGCCTCGCTGCAGCTCCTGCCG TCGCCCACGCCCAACCTCGAGATCAAGTACACCAAGATCTTTATTAACAATGAATGGCAG AACTCAGAGAGTGGGAGAGTGTTCCCTGTCTGTAATCCAGCCACAGGAGAGCAAGTGTGT GAAGTTCAAGAAGCAGACAAGGTGGATATAGACAAGGCAGTGCAAGCAGCCCGCCTTGCC TTCTCTCTTGGTTCTGTGTGGAGAAGGATGGATGCGTCTGAAAGAGGACGTCTGTTGGAC AAGCTTGCAGACTTGGTGGAACGGGACAGGGCAACTCTTGCAACTATGGAATCCCTAAAT GGCGGTAAGCCATTCCTGCAAGCTTTTTACATCGATTTGCAGGGAGTCATCAAAACCCTG AGGTATTATGCAGGCTGGGCTGATAAAATTCACGGAATGACCATTCCTGTAGGTACGTGA >chr9_random_6|geneid_v1.2_predicted_protein_6|160_AA MPGEVKADPAALMASLQLLPSPTPNLEIKYTKIFINNEWQNSESGRVFPVCNPATGEQVC EVQEADKVDIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRATLATMESLN GGKPFLQAFYIDLQGVIKTLRYYAGWADKIHGMTIPVGT* # Gene 7 (Forward). 2 exons. 115 aa. Score = 2.16 First 9135862 9135906 -1.74 + 0 0 2.40 2.54 2.01 0.00 AA 1: 15 chr9_random_7 Terminal 9136058 9136357 3.90 + 0 0 2.93 0.00 19.10 0.00 AA 16:115 chr9_random_7 >chr9_random_7|geneid_v1.2_predicted_cDNA_7|345_NN ATGCTGGAGGTCACTTTAAGACAAGATGAAGAGCCTTGCTCCTGGGGAAGTGAAACTTCA CTGGTAGAGGTGGGAGCACTGCTGCCTCCGCAGAGGCTGCTGCAGCAGCAGCAGCTGAAC AGAACTGTTTGGGAATGTTTCAGGGAGCATCGGCTGCAGCTGGAAGAGCAGCAAACGAGG CTGGTAAGTCAGTTAACTCCAGGTTGTGGGAACCTTAATGCTTCTGGGGAACTTAATGAT GGAAGTACCGAAAAGCCATTAGAAGTCTTTGAGGAAGAAAGAAAAGGGGGAATCTTGTGG GCCGGATGGCTGAAAATGGTCTGGAAGGAGTGTCTGAAAGCATAA >chr9_random_7|geneid_v1.2_predicted_protein_7|115_AA MLEVTLRQDEEPCSWGSETSLVEVGALLPPQRLLQQQQLNRTVWECFREHRLQLEEQQTR LVSQLTPGCGNLNASGELNDGSTEKPLEVFEEERKGGILWAGWLKMVWKECLKA* # Gene 8 (Reverse). 2 exons. 121 aa. Score = 0.92 Terminal 9138563 9138746 -1.85 - 1 0 0.00 4.16 2.89 0.00 AA 60:121 chr9_random_8 Internal 9139417 9139595 2.76 - 0 2 3.92 4.25 8.39 0.00 AA 1: 60 chr9_random_8 >chr9_random_8|geneid_v1.2_predicted_cDNA_8|363_NN TGGCTCCGAATATGGGTCTTTATCCCCAACAGTACTGATGTTCCCATGAGAACACCTTAT TCCCCCCAAGGATCCTTGGAGGTGAATGTCTACAAAAAGCCAGCACTTGGGAGGAAGTGT GTGCAGAGGAATGACAGAGCTCTACAGAAAGCAACAAGAGCTAAGAACTCTGTATCGAGG GTGGTTACTGATAAAACACAAAGCTCAACTGTATACCTTGATGACTCACTGTCATGTGTA TATGAAGTAGAAATGGGTATTACAAAACCCACTTTTAAAATCATCTCCTGGAGTCCCCCA AACATGGAGGACCCTTTTCAAAAGGAAAGTATTGTGCTCTGTATTGAAGTCATAACCAGC TAG >chr9_random_8|geneid_v1.2_predicted_protein_8|121_AA WLRIWVFIPNSTDVPMRTPYSPQGSLEVNVYKKPALGRKCVQRNDRALQKATRAKNSVSR VVTDKTQSSTVYLDDSLSCVYEVEMGITKPTFKIISWSPPNMEDPFQKESIVLCIEVITS *