## date Wed Jul 28 12:54:35 2004 ## source-version: geneid v 1.2 -- geneid@imim.es # Sequence chr10_random - Length = 10622152 bps # Optimal Gene Structure. 6 genes. Score = 52.29 # Gene 1 (Forward). 6 exons. 490 aa. Score = 22.56 First 674604 674914 9.90 + 0 2 1.00 1.19 35.22 0.00 AA 1:104 chr10_random_1 Internal 677669 677838 0.94 + 1 1 0.58 0.96 13.78 0.00 AA 104:161 chr10_random_1 Internal 678277 678496 5.89 + 2 2 4.93 2.55 17.26 0.00 AA 161:234 chr10_random_1 Internal 683531 683777 2.82 + 1 0 2.65 0.60 15.92 0.00 AA 234:316 chr10_random_1 Internal 685453 685605 4.08 + 0 0 1.92 4.49 14.33 0.00 AA 317:367 chr10_random_1 Terminal 687103 687471 -1.07 + 0 0 -1.68 0.00 13.60 0.00 AA 368:490 chr10_random_1 >chr10_random_1|geneid_v1.2_predicted_cDNA_1|1470_NN ATGGAGCCAGAAACTCCAGAGAAGGTGGATTCTGCACAAGAGAAAGTCAGAGGCAAGACC CCGACAGCAGATGATTCAGATGACAGCCGAGAAAAGACTGGCATAGAAGAGAAAGGAGAA CTGACCGACGCCTATCAGCTGCAGGTAGCTGAAGAAATGGCAAAGGAGATCAAGAAGAAA ATAAGAAAGAAGCTAAAGGAACAGCTGACCTACTTTCCTCCAGACACTCTATTGCATGAC GACAAGCTGGCCAGTGAAAAAAGAAAGAAGAAGAAGAAGAAAGTGCCAGTGCCCACTAAG CCTGAGTCAAGTCCCTCAGATGTCTGTGACAGTGCAGTTGAAGGGGAACAAAAGAAAGAA GGTACCCCTGAGGACTCTCAGCACATGGAGGGAATCTGCTCGAGAGAGCAGGATGTGGAT GCCACTGTGCCAGAGAACGCAAAGCCCAAACCCAAGAAGACAAAGAAGAAGACTAAAGCA GTTTCAAATGATAATGAAGACACTAATGGAGATGGTGTTCATGAGATAACAAGCCGAGAC AGCCCAGTTCATCCCAAGTGCTTGCTGGATGATGACCTCGTCATGGGAGTCTACATTCAC CGAACCGATAGACTTAAATCTGACTTTATGATTTCTCACCCAATGGTAAAGATCCATGTG GTTGATGAGCACACTGGCCAGTACGTCAAGAAAGATGACAGAAACCTAACAAATCTCACC CTTTCAGAAAAGCTAATAATTTACACAAATTCTTACTTTAAGCTTCTGGGAGCCAATGGG AATGCAAACATCAACTCAAAACTTCGCCTGCAGCTCTACTACCCACCGACTAAGCCTCGA TCCCAGCTAAATGTCGTCGAGGTTTTTGAATGGTGGTCCAAGTGTCCAAGAAATCGTTAT CCATCAACATTGTATGTAACCGTACGAGGATTGAAAGTCCCGGACTGTATAAAGCCATCT TACCGCTCTATGATGGCTCTCCAGGAGGAAAGGGGTACACCAGTGTACTGTGAACGTCAC CGTGAAACAAGTTCCGTGGACACAGAACCTGGACTAGAAGATTCAAAGGAGGAAGTGAAG TGGAAACGTCTGCCTGGCCAGAGTTGTAATAAGGCTCTGAAGTCCCTCAAAGACAGTTCC CGTGGTGACAGGGGAGCCAGCAGAAAGGCTGAGACGGTTTCTGTTGCTTTGGAGAGTTTA AAAGCACTGCCGTACTGTTCTGGACTTCATGATCCCTTCTATCTCAGTGACGAAATGGAC TCCCCTGGGCAAGAAGCCAGTCAGTCCCTCTGGGTGTCTGCCCTGAGTGCTAGGCCACGC CGCACTTCACCCTACCTCACAGTTCATGTTCATGAGACACCTTCCCAGATGGCAACGCTC AGTTTTTGCTTCTGGGTAATGAACAGACTACTCTTGTCCCAATTTGTCTATGCTAAATGC TGTTACGTGCTTAAATCATCAGAGACTTAA >chr10_random_1|geneid_v1.2_predicted_protein_1|490_AA MEPETPEKVDSAQEKVRGKTPTADDSDDSREKTGIEEKGELTDAYQLQVAEEMAKEIKKK IRKKLKEQLTYFPPDTLLHDDKLASEKRKKKKKKVPVPTKPESSPSDVCDSAVEGEQKKE GTPEDSQHMEGICSREQDVDATVPENAKPKPKKTKKKTKAVSNDNEDTNGDGVHEITSRD SPVHPKCLLDDDLVMGVYIHRTDRLKSDFMISHPMVKIHVVDEHTGQYVKKDDRNLTNLT LSEKLIIYTNSYFKLLGANGNANINSKLRLQLYYPPTKPRSQLNVVEVFEWWSKCPRNRY PSTLYVTVRGLKVPDCIKPSYRSMMALQEERGTPVYCERHRETSSVDTEPGLEDSKEEVK WKRLPGQSCNKALKSLKDSSRGDRGASRKAETVSVALESLKALPYCSGLHDPFYLSDEMD SPGQEASQSLWVSALSARPRRTSPYLTVHVHETPSQMATLSFCFWVMNRLLLSQFVYAKC CYVLKSSET* # Gene 2 (Forward). 5 exons. 303 aa. Score = 6.66 First 1042356 1042395 -4.79 + 0 1 1.84 1.04 -3.81 0.00 AA 1: 14 chr10_random_2 Internal 1042735 1043391 11.56 + 2 1 5.06 1.58 31.45 0.00 AA 14:233 chr10_random_2 Internal 1051080 1051111 -0.11 + 2 0 5.97 1.43 1.12 0.00 AA 233:243 chr10_random_2 Internal 1059249 1059286 0.34 + 0 2 1.65 4.82 4.89 0.00 AA 244:256 chr10_random_2 Terminal 1070151 1070292 -0.34 + 1 0 3.75 0.00 6.04 0.00 AA 256:303 chr10_random_2 >chr10_random_2|geneid_v1.2_predicted_cDNA_2|909_NN ATGGTCAATTATTTGGTACTTTGCCCACCCGTCAGAACAGGCAAGAAATGCACCTACGGG GTCAAGTGCAGATTCTACCACCCCGAGAGACCACACCATGGGCAGCTGTCTGTGGCCGAC GAACTCCGTGCCAAGACGCGGGCCTGGCTGGGTGGTGGCGCCGAGGAGCCGCGGACACCG AGCGCCCGGAGCCGTCCTACAACAGCCCGGCTGCTTCCCCAGGAGCCCGGCGAGCACGAC CTCCCGCCAGCCCCGCAGCCCGCGGTCCTGGCAGCTTTGAATAGGAGCTTCGCTCGGCTC ACCTTCAGCGACACCGCGGCCAGCGGCGTCGTGTCTCAGTCTCGTGGGCCGGACTGGATG CCCACGGGTGTCCCCACGTCCTGGGCCCCACCATCCCTTCGCGCGGGCAGCGCTGCCACC ATAGGGTTGCCAGGTATGCGGAGCCTCCGGACTCCGAACAACCCGCTTTCTCCGGGCGAT CTCGGGTCTCCAATCTGCCCACAGGCCCGGCTGTCGGAGAGACACCGTTCCAGGGACATG CACAGTGACCTGCCTCCCCAGCGCAGACCGCTGGAAGATCCGTGGGCTCTCCTGCCCAGC TCCTATTGTTATCTGAACCACTCGGTCTGGTCCGAGTCGGCTTGGGGTGAGGACATCTTT AGAGGACCTTCGGAGTCAGCACAACCTGTCGCCAATGGCACCAGCCTCTTCACTGCTGAC TGGCTGAGAGGAACACTTGATCGGACAACAGTTGATGATAGAACATGGGAACTGGCAGCT GTGCCTCTCATCAGCTCAGTAAAGCTTGGCTGTCTAGATTCACAAGGCATACGTGCTGCC CTGTTCCGAGACCACGATGGCAGGTTAGCACAAGGCCATGGCAAAGACTTAGTGAAACCA CAAAGGTAG >chr10_random_2|geneid_v1.2_predicted_protein_2|303_AA MVNYLVLCPPVRTGKKCTYGVKCRFYHPERPHHGQLSVADELRAKTRAWLGGGAEEPRTP SARSRPTTARLLPQEPGEHDLPPAPQPAVLAALNRSFARLTFSDTAASGVVSQSRGPDWM PTGVPTSWAPPSLRAGSAATIGLPGMRSLRTPNNPLSPGDLGSPICPQARLSERHRSRDM HSDLPPQRRPLEDPWALLPSSYCYLNHSVWSESAWGEDIFRGPSESAQPVANGTSLFTAD WLRGTLDRTTVDDRTWELAAVPLISSVKLGCLDSQGIRAALFRDHDGRLAQGHGKDLVKP QR* # Gene 3 (Reverse). 4 exons. 214 aa. Score = 1.92 Terminal 1207865 1208051 0.03 - 1 0 0.00 3.67 8.32 0.00 AA 152:214 chr10_random_3 Internal 1210832 1211032 2.28 - 1 2 0.04 3.71 12.59 0.00 AA 85:152 chr10_random_3 Internal 1211545 1211632 0.22 - 2 2 4.37 1.56 4.14 0.00 AA 56: 85 chr10_random_3 First 1218927 1219092 -0.61 - 0 1 1.97 1.03 7.72 0.00 AA 1: 56 chr10_random_3 >chr10_random_3|geneid_v1.2_predicted_cDNA_3|642_NN ATGGCAGGAATTGAAGTAAAATATCTACACGGTGCTGAGAAATCATACGTGAGAGGTCGG CTAACAGAAGCTGTGAGTGAAATCAATGACCCAAACAAGTGCGGGAACCACAGTGTGTCC ATGTTCTCAACTGACTCAGGAAGGAAGAAAAAGAACCGCATTCAAGATGATCAGTATCGG ATAACTGTGTGGCGATTCGCTGAGAGCGGCTGCTTCCCAGATGTTTTCATATGTGCACCC AAAACAACGCTCTGGAATCTGAAACCCTCGATAACAAAGTCTGACACGTTCAATGTGGTG AATAACGAAGGGCATGTTATCGAATTTAACGGAGACGTTTCCAATACAAGGCTCTCTTCT GAGGATCTCAAAGCTGACAAGCGGGAAACTTCCCTGAGGAGAAAGAACCTCAGAGAGAGG ATGTTTGGATTCAAAAACCGGGATGCCAGATCCAGGAGGGCCTTACAAAAGGACAATACC AGCCCACTTATGAAACTGGATTCTGCCATGCAGAGCTATGAGCTTGGCTCTCCATGTCTG GAAGGCCATCAAGTCAGACCAAGAGGCTTCCTGACGGAGCACAGGGTTCTCTTACAACCC TGGAGTGCTGAACGGAAGCTTAAGAGCCCATCCGTTTTCTGA >chr10_random_3|geneid_v1.2_predicted_protein_3|214_AA MAGIEVKYLHGAEKSYVRGRLTEAVSEINDPNKCGNHSVSMFSTDSGRKKKNRIQDDQYR ITVWRFAESGCFPDVFICAPKTTLWNLKPSITKSDTFNVVNNEGHVIEFNGDVSNTRLSS EDLKADKRETSLRRKNLRERMFGFKNRDARSRRALQKDNTSPLMKLDSAMQSYELGSPCL EGHQVRPRGFLTEHRVLLQPWSAERKLKSPSVF* # Gene 4 (Forward). 2 exons. 134 aa. Score = 3.24 First 5721534 5721543 -3.11 + 0 1 0.17 3.03 1.17 0.00 AA 1: 4 chr10_random_4 Terminal 5724885 5725276 6.36 + 2 0 1.77 0.00 26.98 0.00 AA 4:134 chr10_random_4 >chr10_random_4|geneid_v1.2_predicted_cDNA_4|402_NN ATGCTAAAAGCAATTAGAGGATGCCAGAAAAAAATATATGAAAAAGTGTTAGAACTGGAA CCAGATAACTTTGAAGCAACAAATGAACTCAGGAAAATTGATCAGGCATTAACGCTCAAG GAAAACTCACATCCCAAAGAAGCTGCTACAGTGAGTAAGCCAGCTGCAAGAGAGAAAAAA CCCACCAAAGATCAGCCGGGCAGGCAGAAGGTCATCGCAGAGAAAGACCTGGGCAATGGA TTTTTCAAAGAGGGGAAATATAAGCAAGCACTTGAATGCTACATCGAGGGATGGCAGCAG ACAGCACCAATGCTCTACTACCAGCTAACAGAGCGATGGTCTATCTCAATATTCAGAAAT ATGAAGAAGCTGAAAGAGTCTGCACACAAGATATCTTACTAG >chr10_random_4|geneid_v1.2_predicted_protein_4|134_AA MLKAIRGCQKKIYEKVLELEPDNFEATNELRKIDQALTLKENSHPKEAATVSKPAAREKK PTKDQPGRQKVIAEKDLGNGFFKEGKYKQALECYIEGWQQTAPMLYYQLTERWSISIFRN MKKLKESAHKISY* # Gene 5 (Forward). 2 exons. 154 aa. Score = 4.52 First 5900955 5901300 4.54 + 0 1 2.76 2.86 15.42 0.00 AA 1:116 chr10_random_5 Terminal 5901657 5901772 -0.02 + 2 0 4.52 0.00 5.68 0.00 AA 116:154 chr10_random_5 >chr10_random_5|geneid_v1.2_predicted_cDNA_5|462_NN ATGGACCAAACAGACCCAGTTGTGCCGCCAGACATGACCCGAGAACAGGCATGGGCATGG GCCATGGATAATTTTGAGGCCCTGAGCCGTCACTCCTGCCAGCACCCCTGGTGCTGTGGA CCTGGGAACCCCAGCATAGCCACACTGATGGATGGAGCTGCATTTGAAGATGAGAGGGGA CAGAAACGCTGTAGAGAGTCATTTGTTGAAGATCCAATGGCTGAAACATCAGTGAGACTT TGGGGTCCTCAAGAAGTAGGAGCCACTTCCAGGACAAGGGTCCAATGGGCTCTGAATCAG CCCGAAGATGGCAGTGCCCACAGCAGTGGAGACATGCTTTATCCAGGGGCAAAATCTAAG CCTTGTCTGTTTCAGATGTTACTGAGTGAGTTTGACTGCAAGGTCCAAAAACGGGGTCCA AGGAATGGATCCAAGAAACAGCAAAAGGTTTATAGCCTCTAA >chr10_random_5|geneid_v1.2_predicted_protein_5|154_AA MDQTDPVVPPDMTREQAWAWAMDNFEALSRHSCQHPWCCGPGNPSIATLMDGAAFEDERG QKRCRESFVEDPMAETSVRLWGPQEVGATSRTRVQWALNQPEDGSAHSSGDMLYPGAKSK PCLFQMLLSEFDCKVQKRGPRNGSKKQQKVYSL* # Gene 6 (Reverse). 2 exons. 319 aa. Score = 13.38 Terminal 8263715 8263743 -2.24 - 2 0 0.00 5.88 -0.67 0.00 AA 310:319 chr10_random_6 Internal 8264497 8265424 15.62 - 0 1 5.66 6.05 35.23 0.00 AA 1:310 chr10_random_6 >chr10_random_6|geneid_v1.2_predicted_cDNA_6|957_NN TTTATTGCTTTTGCTTCTTTGTTCTTCATTTTGGTTTCCATCACAACCTTTTGCCTGGAG ACACATGAAGCTTTCAATATTGTTAAAAACAAGACGGAGCCCGTCATCAATGGCACCAGC CCGGTCCTCCAGTACGAAATCGAAACGGATCCCGCCCTGACGTACGTGGAAGGAGTATGT GTGGTGTGGTTTACGTTTGAATTTTTAGTCCGAATTGTTTTCTCACCCAATAAACTTGAA TTCATCAAAAATCTCTTGAACATCATTGACTTTGTGGCCATCCTCCCCTTCTACCTAGAG GTGGGACTCAGCGGGCTGTCCTCCAAAGCGGCCAAAGATGTGCTCGGCTTTCTCAGGGTG GTTAGGTTTGTGAGGATCCTGAGAATCTTCAAGCTCACCCGCCATTTCGTAGGTCTGAGG GTGCTCGGACATACTCTTCGGGCGAGCACCAACGAATTTTTGTTGCTGATCATCTTCCTG GCGCTGGGAGTTTTGATATTCGCTACGATGATCTACTACGCTGAGAGAGTAGGGGCTCAG CCCAATGACCCTTCAGCTAGTGAGCACACGCAGTTCAAAAACATCCCCATTGGTTTCTGG TGGGCCGTAGTGACCATGACTACCTTAGGTTACGGGGATATGTACCCCCAAACATGGTCA GGGATGTTGGTGGGGGCCTTGTGTGCCCTGGCCGGAGTGCTGACAATAGCCATGCCTGTG CCTGTCATTGTCAACAATTTTGGAATGTACTACTCCTTGGCAATGGCGAAGCAGAAACTT CCAAGAAAGAGAAAGAAGCATATTCCTCCTGCCCCTCTGGCAAGCTCGCCTACATTTTGC AAGACAGAATTGAACATGGCTTGCAACAGTACCCAGAGTGACACATGTCTGGGCAAAGAA AACCGGCTTCTGGAACATAACAGATCAGAACCGAGTATTGAACATTTTAATACTTGA >chr10_random_6|geneid_v1.2_predicted_protein_6|319_AA FIAFASLFFILVSITTFCLETHEAFNIVKNKTEPVINGTSPVLQYEIETDPALTYVEGVC VVWFTFEFLVRIVFSPNKLEFIKNLLNIIDFVAILPFYLEVGLSGLSSKAAKDVLGFLRV VRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERVGAQ PNDPSASEHTQFKNIPIGFWWAVVTMTTLGYGDMYPQTWSGMLVGALCALAGVLTIAMPV PVIVNNFGMYYSLAMAKQKLPRKRKKHIPPAPLASSPTFCKTELNMACNSTQSDTCLGKE NRLLEHNRSEPSIEHFNT*