## date Fri Sep 10 16:41:21 2004 ## source-version: geneid v 1.2 -- geneid@imim.es # Sequence chr10_random - Length = 10622152 bps # Optimal Gene Structure. 8 genes. Score = 258.23 # Gene 1 (Forward). 8 exons. 447 aa. Score = 91.10 First 674604 674914 19.41 + 0 2 1.00 1.19 35.22 -108.85 AA 1:104 chr10_random_1 Internal 677669 677838 -2.58 + 1 1 0.58 0.96 13.78 -59.50 AA 104:161 chr10_random_1 Internal 678277 678496 27.27 + 2 2 4.93 2.55 17.26 25.20 AA 161:234 chr10_random_1 Internal 680121 680313 12.44 + 1 0 0.30 2.45 12.23 21.09 AA 234:298 chr10_random_1 Internal 680530 680625 3.22 + 0 0 3.11 3.98 2.72 6.56 AA 299:330 chr10_random_1 Internal 683592 683777 13.65 + 0 0 0.34 0.60 14.95 22.34 AA 331:392 chr10_random_1 Internal 685453 685605 19.94 + 0 0 1.92 4.49 14.33 16.27 AA 393:443 chr10_random_1 Terminal 689146 689157 -2.25 + 0 0 5.57 0.00 1.76 -3.15 AA 444:447 chr10_random_1 >chr10_random_1|SGP_v1.0_predicted_cDNA_1|1341_NN ATGGAGCCAGAAACTCCAGAGAAGGTGGATTCTGCACAAGAGAAAGTCAGAGGCAAGACC CCGACAGCAGATGATTCAGATGACAGCCGAGAAAAGACTGGCATAGAAGAGAAAGGAGAA CTGACCGACGCCTATCAGCTGCAGGTAGCTGAAGAAATGGCAAAGGAGATCAAGAAGAAA ATAAGAAAGAAGCTAAAGGAACAGCTGACCTACTTTCCTCCAGACACTCTATTGCATGAC GACAAGCTGGCCAGTGAAAAAAGAAAGAAGAAGAAGAAGAAAGTGCCAGTGCCCACTAAG CCTGAGTCAAGTCCCTCAGATGTCTGTGACAGTGCAGTTGAAGGGGAACAAAAGAAAGAA GGTACCCCTGAGGACTCTCAGCACATGGAGGGAATCTGCTCGAGAGAGCAGGATGTGGAT GCCACTGTGCCAGAGAACGCAAAGCCCAAACCCAAGAAGACAAAGAAGAAGACTAAAGCA GTTTCAAATGATAATGAAGACACTAATGGAGATGGTGTTCATGAGATAACAAGCCGAGAC AGCCCAGTTCATCCCAAGTGCTTGCTGGATGATGACCTCGTCATGGGAGTCTACATTCAC CGAACCGATAGACTTAAATCTGACTTTATGATTTCTCACCCAATGGTAAAGATCCATGTG GTTGATGAGCACACTGGCCAGTACGTCAAGAAAGATGACAGTGAACGTCCTGTTTCATCT TATTATGAGAAAGACAACGTGGACTATATTCTCCCTATTATGACACAGCCATATGACTTT AAAAAGCTAAAGTCAAGGCTTCCGGAGTGGGAGGAGCAAGTTATTTTTAATGAAAATTTT CCCTATTTGCTTCGAGAGTTTGAAGAATGTCCAAAAGTCATCCTGTTCTTTGAGATTCTT GACTTTTTAAGCATGGATGAAATCAAGAATAACTCTGAGGTTCAAAACCAAGAGTGTGGC TTTCGGAAAATTGCCTGGGCGTTTCTTAAGCTTCTGGGAGCCAATGGGAATGCAAACATC AACTCAAAACTTCGCCTGCAGCTCTACTACCCACCGACTAAGCCTCGATCCCAGCTAAAT GTCGTCGAGGTTTTTGAATGGTGGTCCAAGTGTCCAAGAAATCGTTATCCATCAACATTG TATGTAACCGTACGAGGATTGAAAGTCCCGGACTGTATAAAGCCATCTTACCGCTCTATG ATGGCTCTCCAGGAGGAAAGGGGTACACCAGTGTACTGTGAACGTCACCGTGAAACAAGT TCCGTGGACACAGAACCTGGACTAGAAGATTCAAAGGAGGAAGTGAAGTGGAAACGTCTG CCTGGCCAGGCCCTGGACTAG >chr10_random_1|SGP_v1.0_predicted_protein_1|447_AA MEPETPEKVDSAQEKVRGKTPTADDSDDSREKTGIEEKGELTDAYQLQVAEEMAKEIKKK IRKKLKEQLTYFPPDTLLHDDKLASEKRKKKKKKVPVPTKPESSPSDVCDSAVEGEQKKE GTPEDSQHMEGICSREQDVDATVPENAKPKPKKTKKKTKAVSNDNEDTNGDGVHEITSRD SPVHPKCLLDDDLVMGVYIHRTDRLKSDFMISHPMVKIHVVDEHTGQYVKKDDSERPVSS YYEKDNVDYILPIMTQPYDFKKLKSRLPEWEEQVIFNENFPYLLREFEECPKVILFFEIL DFLSMDEIKNNSEVQNQECGFRKIAWAFLKLLGANGNANINSKLRLQLYYPPTKPRSQLN VVEVFEWWSKCPRNRYPSTLYVTVRGLKVPDCIKPSYRSMMALQEERGTPVYCERHRETS SVDTEPGLEDSKEEVKWKRLPGQALD* # Gene 2 (Reverse). 5 exons. 194 aa. Score = 17.63 Terminal 752421 752546 0.51 - 0 0 0.00 4.57 5.40 -6.89 AA 153:194 chr10_random_2 Internal 752971 753050 3.89 - 2 0 3.84 2.02 4.49 7.16 AA 126:152 chr10_random_2 Internal 756977 757080 3.00 - 1 1 3.50 3.36 3.22 3.74 AA 91:126 chr10_random_2 Internal 759198 759403 16.15 - 0 2 3.06 5.53 8.87 18.28 AA 23: 91 chr10_random_2 First 760298 760363 -5.92 - 0 0 2.03 -0.69 1.89 5.05 AA 1: 22 chr10_random_2 >chr10_random_2|SGP_v1.0_predicted_cDNA_2|582_NN ATGGTTGGTGGACCACTTCTGGGCTTGTTTTCTTTGGGCATCTTGGTCCCCTTCGCCAAC TCGATTGGAGCACTCACTGGTCTGTTGGCTGGATTTGCCATTTCCTTATGGGTAGGAATT GGAGCCCAGCTTTATCCTCCGCTTCCTGAGAGAACCTTACCATTGCCCCTTGAAACCTAT GGCTGTAACATCACGCACAATGGGTCGGACTGGATGTCAACCACAGAAATGCCATTTTCT ACTAGCGCTTTTCAAATACATAATGCGGAAAGGACTCCACTGATGGACAATTGGTATTCA TTATCATATCTGTACTTCAGTACTATTGGAACGCTGACAACACTGTTTGTGGGGATACTT ATCAGCTTATCAACAGGAGGAAGAAAACAGAACTTAGATCCCCGATTCTTACTAACCAAA CAGGACTTTTTATCCAATTTTGATGTTTTTAAGAAAAGGAATCATGTTTTAAACTATAAA TTGCATCCTGTGGAAGTTGGTGGAACTGATAACCCTGCCTTCAACCATGTTGAGCTGAAC TTCACAGATCACAGTGGCAAGATCAATGGGACTCGCTTGTGA >chr10_random_2|SGP_v1.0_predicted_protein_2|194_AA MVGGPLLGLFSLGILVPFANSIGALTGLLAGFAISLWVGIGAQLYPPLPERTLPLPLETY GCNITHNGSDWMSTTEMPFSTSAFQIHNAERTPLMDNWYSLSYLYFSTIGTLTTLFVGIL ISLSTGGRKQNLDPRFLLTKQDFLSNFDVFKKRNHVLNYKLHPVEVGGTDNPAFNHVELN FTDHSGKINGTRL* # Gene 3 (Forward). 3 exons. 160 aa. Score = 10.37 First 1042329 1042335 -10.12 + 0 1 2.59 -3.64 1.78 -2.45 AA 1: 3 chr10_random_3 Internal 1042735 1043127 25.49 + 2 1 5.06 3.29 21.42 -23.82 AA 3:134 chr10_random_3 Terminal 1064271 1064350 -5.00 + 2 0 1.84 0.00 6.81 -26.95 AA 134:160 chr10_random_3 >chr10_random_3|SGP_v1.0_predicted_cDNA_3|480_NN ATGTCGGGCAAGAAATGCACCTACGGGGTCAAGTGCAGATTCTACCACCCCGAGAGACCA CACCATGGGCAGCTGTCTGTGGCCGACGAACTCCGTGCCAAGACGCGGGCCTGGCTGGGT GGTGGCGCCGAGGAGCCGCGGACACCGAGCGCCCGGAGCCGTCCTACAACAGCCCGGCTG CTTCCCCAGGAGCCCGGCGAGCACGACCTCCCGCCAGCCCCGCAGCCCGCGGTCCTGGCA GCTTTGAATAGGAGCTTCGCTCGGCTCACCTTCAGCGACACCGCGGCCAGCGGCGTCGTG TCTCAGTCTCGTGGGCCGGACTGGATGCCCACGGGTGTCCCCACGTCCTGGGCCCCACCA TCCCTTCGCGCGGGCAGCGCTGCCACCATAGGGTTGCCAGCCTACCTCAACTACAGTAGC AACAGCAGCAACCGTGTCCAGCTAAAACTAGACCCAAAGCGACTAAAACTAAATTCTTGA >chr10_random_3|SGP_v1.0_predicted_protein_3|160_AA MSGKKCTYGVKCRFYHPERPHHGQLSVADELRAKTRAWLGGGAEEPRTPSARSRPTTARL LPQEPGEHDLPPAPQPAVLAALNRSFARLTFSDTAASGVVSQSRGPDWMPTGVPTSWAPP SLRAGSAATIGLPAYLNYSSNSSNRVQLKLDPKRLKLNS* # Gene 4 (Forward). 5 exons. 122 aa. Score = 9.48 First 1174757 1174779 -6.57 + 0 2 -1.00 2.48 2.71 -8.05 AA 1: 8 chr10_random_4 Internal 1203010 1203048 4.08 + 1 2 5.12 1.12 4.33 3.66 AA 8: 21 chr10_random_4 Internal 1210731 1210787 5.21 + 1 2 3.80 1.67 6.10 3.03 AA 21: 40 chr10_random_4 Internal 1213000 1213201 11.64 + 1 0 -1.37 1.06 15.79 12.93 AA 40:107 chr10_random_4 Terminal 1224207 1224251 -4.88 + 0 0 3.21 0.00 3.69 -14.70 AA 108:122 chr10_random_4 >chr10_random_4|SGP_v1.0_predicted_cDNA_4|366_NN ATGAAGATCATGAATGGAGTCAGCCTTCAGGATAATTCCTTCGGCAGCGCCGCTGTAACT GAGTGTGACGAAGATACAGTCTCTGTACATGAAGACGAAGACGACTGCTCTGGGCTCAGA GATGAAGACAATAAAGAGAATTACCCCCAGGTGGCAGCTCGCTTAGATGAGCTCGCCCTG CCCTCCCACGAGGCTCAGCAGCATGTAGAACAGACCCTGCCTGTGGATGGAGTGCTGAGA ACCAGTATGGGCAACTTCAAGTCCCGAAAGCCCAAATCCATCCTCAGAGCCGAGAGTGGT CGGAACCACGGAGAAAGCCAGGTGTTTGCCTGGAATGACTTCACAGTGACGAAAACGTCT GACTAG >chr10_random_4|SGP_v1.0_predicted_protein_4|122_AA MKIMNGVSLQDNSFGSAAVTECDEDTVSVHEDEDDCSGLRDEDNKENYPQVAARLDELAL PSHEAQQHVEQTLPVDGVLRTSMGNFKSRKPKSILRAESGRNHGESQVFAWNDFTVTKTS D* # Gene 5 (Reverse). 2 exons. 224 aa. Score = 27.01 Terminal 5718972 5719155 18.25 - 1 0 0.00 2.97 6.33 92.51 AA 163:224 chr10_random_5 First 5719423 5719910 8.76 - 0 2 -0.21 -0.17 9.00 44.77 AA 1:163 chr10_random_5 >chr10_random_5|SGP_v1.0_predicted_cDNA_5|672_NN ATGAAAAACCACTCTGTTATCACCGAGTTTCTGCTCTTGGGCATATCAGACACACCAGAA CTTCAGTTTGTGATTTTTATCTTTTTATTCATTGCTTACATATTAAGTGTCACTGGAAAC CTAACCATCATCATCCTCACATTGCTAGACTCTCAGTTAAAGACTCCTATGTACTTTTTC CTCCGGAATTTCTCCTTCTTAGAAATTATATTCACCAGTGTTTCAATCCCTAGATTTTTG GAGTCAATAATTACTAAAGTTAAGACTATTTCCTATAACAACTGTTTGGCTCAGTTATTT TTCTTCATCTCCATGGGAGTGTCTGAGTTCTTTCTTCTAACTGCTATGTCTTATGATCGC TATGTAGCCATCTGCAAGCCTCTGCACTACACCCTCATCATGAATCAGAAAGTCTGCACC CTTCTTGTCCTCACCTCATGGCTGGGAGGGTTTCTGACCATCTTTCCATTGCTCATGCTG TTTCTCAACTGCATTTTCATGTATGTCAAACCTTCTGCAAATGAAAGAGCATCACTGACC AAAGGGGTGGCTCTTCTCAATACTTCAATTGCTCCCATGCTGAACCCTTTTATTTACACC TTGAGAAATCAACAAGTAAAACAAGCCTTCAAGGATTTGATTAATAAACTAATGTTTAAT AGAAACAAATGA >chr10_random_5|SGP_v1.0_predicted_protein_5|224_AA MKNHSVITEFLLLGISDTPELQFVIFIFLFIAYILSVTGNLTIIILTLLDSQLKTPMYFF LRNFSFLEIIFTSVSIPRFLESIITKVKTISYNNCLAQLFFFISMGVSEFFLLTAMSYDR YVAICKPLHYTLIMNQKVCTLLVLTSWLGGFLTIFPLLMLFLNCIFMYVKPSANERASLT KGVALLNTSIAPMLNPFIYTLRNQQVKQAFKDLINKLMFNRNK* # Gene 6 (Forward). 1 exons. 115 aa. Score = 15.69 Single 5725150 5725494 15.69 + 0 0 -2.96 0.00 21.92 13.84 AA 1:115 chr10_random_6 >chr10_random_6|SGP_v1.0_predicted_cDNA_6|345_NN ATGCTACATCGAGGGATGGCAGCAGACAGCACCAATGCTCTACTACCAGCTAACAGAGCG ATGGTCTATCTCAATATTCAGAAATATGAAGAAGCTGAAAGAGTCTGCACACAAGATATC TTACTAGATGGTTCATACTCAAAAGTGTTTGCCGGAAAAGGAACCACAAGATCATTTTGG GGAAAGATCAGTGAGGCCAAGCAAGATTTTGAAACTGTTTTACTTCCGAAACCTGGAAAT AAACAAGCAGTGACCGAGCTTTCCAGAACTAACACGGAATTAATTGAGAAAGGACATTGG GATGATGTCTTTCTTGACTCCACACAGAGACGTGCAATTGGATAG >chr10_random_6|SGP_v1.0_predicted_protein_6|115_AA MLHRGMAADSTNALLPANRAMVYLNIQKYEEAERVCTQDILLDGSYSKVFAGKGTTRSFW GKISEAKQDFETVLLPKPGNKQAVTELSRTNTELIEKGHWDDVFLDSTQRRAIG* # Gene 7 (Forward). 1 exons. 135 aa. Score = 18.50 Single 5900955 5901359 18.50 + 0 0 2.76 0.00 18.76 3.13 AA 1:135 chr10_random_7 >chr10_random_7|SGP_v1.0_predicted_cDNA_7|405_NN ATGGACCAAACAGACCCAGTTGTGCCGCCAGACATGACCCGAGAACAGGCATGGGCATGG GCCATGGATAATTTTGAGGCCCTGAGCCGTCACTCCTGCCAGCACCCCTGGTGCTGTGGA CCTGGGAACCCCAGCATAGCCACACTGATGGATGGAGCTGCATTTGAAGATGAGAGGGGA CAGAAACGCTGTAGAGAGTCATTTGTTGAAGATCCAATGGCTGAAACATCAGTGAGACTT TGGGGTCCTCAAGAAGTAGGAGCCACTTCCAGGACAAGGGTCCAATGGGCTCTGAATCAG CCCGAAGATGGCAGTGCCCACAGCAGTGGAGACATGCTTTATCCAGGTGAATTCTGGAGC CAAGGGGGCTCCCAGAAACGACTAAAGACAGAATCTTCCATGTGA >chr10_random_7|SGP_v1.0_predicted_protein_7|135_AA MDQTDPVVPPDMTREQAWAWAMDNFEALSRHSCQHPWCCGPGNPSIATLMDGAAFEDERG QKRCRESFVEDPMAETSVRLWGPQEVGATSRTRVQWALNQPEDGSAHSSGDMLYPGEFWS QGGSQKRLKTESSM* # Gene 8 (Reverse). 2 exons. 365 aa. Score = 68.46 Terminal 8263937 8264103 -5.83 - 2 0 0.00 1.30 2.15 9.24 AA 310:365 chr10_random_8 Internal 8264497 8265424 74.28 - 0 1 5.66 6.05 35.23 109.26 AA 1:310 chr10_random_8 >chr10_random_8|SGP_v1.0_predicted_cDNA_8|1095_NN TTTATTGCTTTTGCTTCTTTGTTCTTCATTTTGGTTTCCATCACAACCTTTTGCCTGGAG ACACATGAAGCTTTCAATATTGTTAAAAACAAGACGGAGCCCGTCATCAATGGCACCAGC CCGGTCCTCCAGTACGAAATCGAAACGGATCCCGCCCTGACGTACGTGGAAGGAGTATGT GTGGTGTGGTTTACGTTTGAATTTTTAGTCCGAATTGTTTTCTCACCCAATAAACTTGAA TTCATCAAAAATCTCTTGAACATCATTGACTTTGTGGCCATCCTCCCCTTCTACCTAGAG GTGGGACTCAGCGGGCTGTCCTCCAAAGCGGCCAAAGATGTGCTCGGCTTTCTCAGGGTG GTTAGGTTTGTGAGGATCCTGAGAATCTTCAAGCTCACCCGCCATTTCGTAGGTCTGAGG GTGCTCGGACATACTCTTCGGGCGAGCACCAACGAATTTTTGTTGCTGATCATCTTCCTG GCGCTGGGAGTTTTGATATTCGCTACGATGATCTACTACGCTGAGAGAGTAGGGGCTCAG CCCAATGACCCTTCAGCTAGTGAGCACACGCAGTTCAAAAACATCCCCATTGGTTTCTGG TGGGCCGTAGTGACCATGACTACCTTAGGTTACGGGGATATGTACCCCCAAACATGGTCA GGGATGTTGGTGGGGGCCTTGTGTGCCCTGGCCGGAGTGCTGACAATAGCCATGCCTGTG CCTGTCATTGTCAACAATTTTGGAATGTACTACTCCTTGGCAATGGCGAAGCAGAAACTT CCAAGAAAGAGAAAGAAGCATATTCCTCCTGCCCCTCTGGCAAGCTCGCCTACATTTTGC AAGACAGAATTGAACATGGCTTGCAACAGTACCCAGAGTGACACATGTCTGGGCAAAGAA AACCGGCTTCTGGAACATAACAGATCAGTTTCACCTCTGCCACACAGCACTCTGCATCTC GACCTTGTTCACGAGAAGCAGCTACTGAGGGAAAACGGATGCTTGCACCTCAAAGGCATA GGCACTAATGAGGTGATGTGGAAGACAGACCTTGCAATAAGAAAGCACATTACTAGTGTT ATTCTAGTGAACTAA >chr10_random_8|SGP_v1.0_predicted_protein_8|365_AA FIAFASLFFILVSITTFCLETHEAFNIVKNKTEPVINGTSPVLQYEIETDPALTYVEGVC VVWFTFEFLVRIVFSPNKLEFIKNLLNIIDFVAILPFYLEVGLSGLSSKAAKDVLGFLRV VRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERVGAQ PNDPSASEHTQFKNIPIGFWWAVVTMTTLGYGDMYPQTWSGMLVGALCALAGVLTIAMPV PVIVNNFGMYYSLAMAKQKLPRKRKKHIPPAPLASSPTFCKTELNMACNSTQSDTCLGKE NRLLEHNRSVSPLPHSTLHLDLVHEKQLLRENGCLHLKGIGTNEVMWKTDLAIRKHITSV ILVN*