## date Wed May 20 17:55:45 2009 ## source-version: geneid_v1.3 -- geneid@imim.es # Sequence chrUn_gl000222 - Length = 186861 bps # Optimal Gene Structure. 7 genes. Score = 678.29 # Gene 1 (Forward). 3 exons. 905 aa. Score = 494.72 First 11792 11954 19.89 + 0 1 1.08 4.05 14.48 19.88 AA 1: 55 chrUn_gl000222_1 Internal 12196 12288 4.40 + 2 1 3.97 2.21 4.78 5.27 AA 55: 86 chrUn_gl000222_1 Terminal 14212 16670 470.42 + 2 0 5.06 0.00 229.68 844.56 AA 86:905 chrUn_gl000222_1 >chrUn_gl000222_1|SGP_v1.0_predicted_cDNA_1|2715_NN ATGCTGGAGACCTACAACAGCCTGGTATCATTACAGGAGTTGGTGTCCTTTGAGGAGGTA GCTGTGCACTTCACCTGGGAGGAGTGGCAGGACCTGGATGACGCTCAGAGGACCCTGTAC AGGGACGTGATGCTGGAGACCTACAGCAGCCTGGTATCATTGGGGCATTGCATTACCAAA CCTGAGATGATCTTCAAGCTAGAGCAAGGAGCAGAGCCATGGATAGTAGAAGAAACCCTA AACCTGAGACTTTCAGCTGTCCAGATCATTGATGACCTTATTGAAAGGAGCCATGAAAGT CATGATAGATTTTTCTGGCAAATTGTAATCACCAACAGCAACACATCAACTCAGGAGAGA GTTGAATTAGGAAAAACATTTAATTTGAACTCAAACCATGTTTTAAATCTGATTATAAAT AATGGAAACAGTTCAGGAATGAAGCCTGGGCAGTTTAATGATTGCCAGAACATGCTTTTC CCTATTAAGCCTGGGGAGACACAGTCTGGAGAGAAACCTCATGTCTGTGATATAACCAGG AGATCCCACAGACATCATGAACATCTTACTCAGCATCACAAGATTCAAACTCTGGTGCAG ACTTTTCAATGTAATGAACAAGGGAAAACCTTCAACACGGAGGCAATGTTCTTTATACAT AAGAGGGTTCATATAGTACAGACCTTTGGTAAATATAATGAATATGAGAAAGCCTGTAAT AACTCAGCTGTTATTGTCCAAGGGATAACTCAGGTAGGACAGCCAACTTGCTGTAGAAAG TCTGACTTCACTAAACATCAGCAGACACACACAGGAGAGAAACCCTATGAATGTGTTGAA TGTGAGAAACCCTCCATTAGCAAATCAGACCTTATGCTACAGTGCAAGATGCCTACTGAG GAAAAACCTTATGCCTGTAACTGGTGTGAAAAATTGTTCAGCTATAAGTCCAGCCTCATT ATCCATCAGAGAATTCACACAGGGGAAAAGCCCTATGGATGCAATGAATGTGGAAAAACC TTTCGCTGTAAGTCATTCCTCACTTTACATGAGAGAACTCACACAGGGGATAAACCCTAC AAATGTATTGAATGTGGAAAAACTTTTCACTGTAAGTCACTTCTCACTTTACATCACAGA ACTCACTCAGGGGAAAAGCCCTATCAGTGTAGTGAATGTGGAAAAACCTTTAGCCAGAAG TCATACCTCACAATACATCATAGAACTCACACAGGGGAAAAGCCCTATGCATGTGACCAT TGTGAAGAAGCATTTAGCCATAAGTCAAGGCTTACTGTCCATCAGAGAACACACACAGGG GAAAAACCGTATGAATGTAATGAGTGTGGAAAACCCTTTATCAATAAGTCGAACCTCAGG TTACATCAGAGAACTCACACAGGGGAAAAACCCTATGAATGCAATGAATGTGGGAAAACG TTTCACCGTAAGTCATTCCTCACTATCCATCAATGGACTCACACAGGGGAAAAACCCTAC GAATGCAATGAATGTGGGAAAACCTTTCGCTGTAAGTCATTCCTCACTGTCCATCAGAGA ACTCATGCTGGGGAAAAACCATACGCATGTAACGAATGTGGAAAAACATATAGCCACAAG TCATACCTTACAGTACATCACAGAACTCACACAGGGGAAAAACCCTATGAATGTAATGAA TGTGGAAAATCCTTTCACTGTAAGTCATTCCTAACTATACATCAGAGAACTCATGCTGGC AAAAAACCCTATGAATGTAATGAATGTGAGAAAACCTTTATCAATAAGTTAAACCTTGGG ATACACAAGATAACTCACACAGGGGAAAGACCCTATGAATGTAATGAATGTGGAAAAACC TTTCGTCAGAAGTCAAATCTCAGCACCCATCAGGGAACTCACACAGGAGAGAAACCTTAC GTATGTGGAAAAACCTTTCATCGCAAGTCATTCCTCACCATACACCAGAGAACTCACACG GGGAAAAACCATATGGATGTAATGAATGTGGAAAAACTTTTTGTCAGAAATCATACCTTA TTATACATCAGAGAACTCACACCGGGGAAAAGCCCTATGAATGTAATGAATGTGGAAAAT CCTTTCATCAGAAGGGAAATCTTCAGAAGCATCAAGGTATTCACACGGGGGAGAAACCCT ATGAATGTAGCAAATGTGGAAAAACCTTGTCAGAAGTCAGTCCTCACTGTACATCATAGA ACCCATACCGGAGAAAAACCTTATGAATGTAATGAGTGTGGGAAAACCTTTTGTCACAAG TCAAACCTCAGTACGCATCAGGGGACTCACTCAGGAGAGAAACCCTATGAATGTGATGAA TGTAGGAAAACTTTTTACGATAGGACAGTTCTCACCATACATCAGAGAACTCACACAGGT GAGAAGCCATTTGAATGTAAAGAATGTAGGAAAACCTTCTCCCAGAAGTCAAAACTCTTT GTACATCACAGAACTCACACAGGGGAAAAACCCTTTAGATGTAATGAATGTAGGAAAACT TTCTCCCAGAAGTCAGGCCTCAGTATACATCAGAGAACACACACAGGAGAAAAACCTTAT GAATGTAAGGAATGTGGGAAAACCTTTTGCCAGAAGTCACACCTCAGCAGGCATCAACAA ACCCATATAGGAGAGAAATCTGACGTAGCTGAGGCAGGCTATGTGTTCCCTCAAAATCAC TCTTTTTTCCCTTGA >chrUn_gl000222_1|SGP_v1.0_predicted_protein_1|905_AA MLETYNSLVSLQELVSFEEVAVHFTWEEWQDLDDAQRTLYRDVMLETYSSLVSLGHCITK PEMIFKLEQGAEPWIVEETLNLRLSAVQIIDDLIERSHESHDRFFWQIVITNSNTSTQER VELGKTFNLNSNHVLNLIINNGNSSGMKPGQFNDCQNMLFPIKPGETQSGEKPHVCDITR RSHRHHEHLTQHHKIQTLVQTFQCNEQGKTFNTEAMFFIHKRVHIVQTFGKYNEYEKACN NSAVIVQGITQVGQPTCCRKSDFTKHQQTHTGEKPYECVECEKPSISKSDLMLQCKMPTE EKPYACNWCEKLFSYKSSLIIHQRIHTGEKPYGCNECGKTFRCKSFLTLHERTHTGDKPY KCIECGKTFHCKSLLTLHHRTHSGEKPYQCSECGKTFSQKSYLTIHHRTHTGEKPYACDH CEEAFSHKSRLTVHQRTHTGEKPYECNECGKPFINKSNLRLHQRTHTGEKPYECNECGKT FHRKSFLTIHQWTHTGEKPYECNECGKTFRCKSFLTVHQRTHAGEKPYACNECGKTYSHK SYLTVHHRTHTGEKPYECNECGKSFHCKSFLTIHQRTHAGKKPYECNECEKTFINKLNLG IHKITHTGERPYECNECGKTFRQKSNLSTHQGTHTGEKPYVCGKTFHRKSFLTIHQRTHT GKNHMDVMNVEKLFVRNHTLLYIRELTPGKSPMNVMNVENPFIRREIFRSIKVFTRGRNP MNVANVEKPCQKSVLTVHHRTHTGEKPYECNECGKTFCHKSNLSTHQGTHSGEKPYECDE CRKTFYDRTVLTIHQRTHTGEKPFECKECRKTFSQKSKLFVHHRTHTGEKPFRCNECRKT FSQKSGLSIHQRTHTGEKPYECKECGKTFCQKSHLSRHQQTHIGEKSDVAEAGYVFPQNH SFFP* # Gene 2 (Reverse). 3 exons. 156 aa. Score = 3.02 Terminal 49618 49627 -6.92 - 1 0 0.00 4.77 -0.86 -2.46 AA 153:156 chrUn_gl000222_2 Internal 84183 84617 13.87 - 1 2 -0.77 -6.27 21.58 33.95 AA 8:153 chrUn_gl000222_2 First 85182 85204 -3.93 - 0 2 -0.63 1.30 5.18 -8.09 AA 1: 8 chrUn_gl000222_2 >chrUn_gl000222_2|SGP_v1.0_predicted_cDNA_2|468_NN ATGAACGAGTTCCACACCACTGCCGAGGTCCTGCGAGCCTGCTTTGAGCGGAACCCGTAC CCGGGCATCGCCACCAGAGAACGGCTGGCCCAGGCCATCGGCATTCCGGAGCCCAGGGTC CAGATTTGGTTTCAGAATGAGAGGTCACGCCAGCTGAGGCAGCACCGGCGGGAATCTCGG CCCTGGCCCGGGAGACGCGGCCTGCAAGAAGGCAGGCGAAAGCGGACCGCCGTCACCGGA TCCCAGACCGCCCTGCTCCTCCGAGCCTTTGAGAAGGATCGCTTTCCAGGCATCGCCGCC AGGGAAGAGCTGGCCAGAGAGACGGGCCTCCCGGAGTCCAGGATTCAGATCTGGTTTCAG AATCGAAGGGCCAGGCACCCGGGACAGGGTGGCAGGGCGCCCGCGCACGCAGGCGGCCTG TGCAACGCGGCCCCCAGCGGGTGTCACCCTGCTCCCTCTTACTTATAA >chrUn_gl000222_2|SGP_v1.0_predicted_protein_2|156_AA MNEFHTTAEVLRACFERNPYPGIATRERLAQAIGIPEPRVQIWFQNERSRQLRQHRRESR PWPGRRGLQEGRRKRTAVTGSQTALLLRAFEKDRFPGIAAREELARETGLPESRIQIWFQ NRRARHPGQGGRAPAHAGGLCNAAPSGCHPAPSYL* # Gene 3 (Reverse). 3 exons. 207 aa. Score = 21.02 Terminal 87599 88113 24.47 - 2 0 0.00 4.11 28.86 -46.37 AA 36:207 chrUn_gl000222_3 Internal 88744 88821 1.00 - 2 1 4.27 2.41 5.90 -27.42 AA 10: 36 chrUn_gl000222_3 First 95069 95096 -4.45 - 0 1 1.41 2.68 1.62 -9.79 AA 1: 10 chrUn_gl000222_3 >chrUn_gl000222_3|SGP_v1.0_predicted_cDNA_3|621_NN ATGGCTGCGGATCTCGCTGGCCCAGTGGCAGGATCAGATCCCAATCCAAACAAGGAGAAT TCTGAGGAAACCAAGCTCAAGGCCGGGAACAGCACTGCTGGATCAGGGAACTGTCCAGAA GAGGAGTGCAACTTGACGTTGAATAAAAAATCAAGATCCTCCACTGCTGTGCACAACAGT GAAATCCAGGAGACCTGTGATGCCCACCATAGGGGAAGTTCCAGGGCTTGCACTGGGCGC AGCAAGCGGCATAGGTCTCGGGCCCTAGAAGTCCAAACACCGTCACTTCGAAAAAGCTTG GTGACCTCTGTGCGAGCTATGTCGGAGGCTGTTTATCAAGACCTAGCCCAGGTGTGGGCA CAGCAGATCCATTCTCCACTGACCTGTGAGCAGCTGACACTGCTCACTCGGCTCCGGGGG CCTCTGTGTGCCCAGGTGCAGACCTTGTATTCCATGGCCACTCAGGCAGCTTATGTCTTC CCTGCTGAGAGCTGGCTTGTCCCAGCCACACTGCCTGGTCCTGGGGATTCAGCCCTGGAT AGAGAAGCCCATCCCTTCCCTGGGCAGGAGATAACTGAGCCTGTCAGTGGATCAGATGAG GCTAAGCTGGGAGCACCCTGA >chrUn_gl000222_3|SGP_v1.0_predicted_protein_3|207_AA MAADLAGPVAGSDPNPNKENSEETKLKAGNSTAGSGNCPEEECNLTLNKKSRSSTAVHNS EIQETCDAHHRGSSRACTGRSKRHRSRALEVQTPSLRKSLVTSVRAMSEAVYQDLAQVWA QQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAESWLVPATLPGPGDSALD REAHPFPGQEITEPVSGSDEAKLGAP* # Gene 4 (Forward). 3 exons. 228 aa. Score = 49.70 First 98157 98237 -3.14 + 0 0 2.79 -1.98 8.77 -28.32 AA 1: 27 chrUn_gl000222_4 Internal 99066 99344 18.50 + 0 0 2.03 0.24 23.27 -22.84 AA 28:120 chrUn_gl000222_4 Terminal 128646 128969 34.35 + 0 0 -3.92 0.00 33.53 33.34 AA 121:228 chrUn_gl000222_4 >chrUn_gl000222_4|SGP_v1.0_predicted_cDNA_4|684_NN ATGGCCTCGCACAGGACGGCTGCTCAGAGCGACAGGAGCAACCGCCAGGAGCTCCGCACG CAGCTGGAAGAACTCAGTAATGATGAGAAAATCACAGAGACTGATAGTGAACCAGAAGAA GGTGAAATTACAGACTCTCAGACCGAGGGTAGTTATGATGAAGGCATTACCAGTAAAGGC AATGCAACTGCAAAAGATACTGAGGAGGCAGATGAGGAAAAAGTGTGGCCCTCATATATG AGAGTAATTGTCATTAGATCACCTGTGTTACAGACAGGATCATTCTTCATCATTACTGCT GTAAAATCTGCTACAATTGGAAGAGAAAATGACATGGAGCATACTCTTCGAATCCCTGAA AGGCAGCCCAGATATCCTCGGAAGAACACCCCCAGGAGAAACAAGCTTGACCACTATGCT ATCATCAAGTTTCCGCTGACCACTGAGTCGGCCGTGAAGAAGACAGAAGAAAACTACACA CTTGTGTTCATTGTGGATGTTAAAGCCAACAAGCACCAGATCAAACTGGCTGTGAAGAAG CTCTATGACAGTGATGTGGCCAAGGTCACCACCCTGATTTGTCCTGATAAAGAGAAAAAG GCATATGTTCGACTCGCTCCTGATTATGATGCTTTGGATGTTGCAACAAAATTGGGATCA TCTAAACTGAGTCCAGCTGGCTAA >chrUn_gl000222_4|SGP_v1.0_predicted_protein_4|228_AA MASHRTAAQSDRSNRQELRTQLEELSNDEKITETDSEPEEGEITDSQTEGSYDEGITSKG NATAKDTEEADEEKVWPSYMRVIVIRSPVLQTGSFFIITAVKSATIGRENDMEHTLRIPE RQPRYPRKNTPRRNKLDHYAIIKFPLTTESAVKKTEENYTLVFIVDVKANKHQIKLAVKK LYDSDVAKVTTLICPDKEKKAYVRLAPDYDALDVATKLGSSKLSPAG* # Gene 5 (Forward). 5 exons. 240 aa. Score = 67.10 First 129556 129564 -3.10 + 0 0 5.15 0.17 -0.04 -3.16 AA 1: 3 chrUn_gl000222_5 Internal 129786 130059 17.83 + 0 1 6.99 2.23 7.94 23.55 AA 4: 95 chrUn_gl000222_5 Internal 131890 132008 26.23 + 2 0 2.66 3.69 19.40 8.03 AA 95:134 chrUn_gl000222_5 Internal 133836 134110 32.93 + 0 2 1.62 0.86 33.17 -25.15 AA 135:226 chrUn_gl000222_5 Terminal 134536 134578 -6.80 + 1 0 2.80 0.00 2.28 -14.06 AA 226:240 chrUn_gl000222_5 >chrUn_gl000222_5|SGP_v1.0_predicted_cDNA_5|720_NN ATGCGGGGTGGCTATGGTGTGTGCTCGGTGGGGCTGGAGTGGCTGGCTTACCTCCTCGTG CCTTACAGCCTGGGCGCCTCAGCCACCTCACTCCTGGGCCTGCTGGGCCTGTGGCTGCCA CGCCCTGTGCCCCTGGTGGCTGGAGCAGGGGTGCACCTGCTGCTCACCTTCATCCTCTTT TTCTGGGCCCCTGTGCCTCGGGTCCTGCAACACAGCTGGATCCTCTATGTGGCAGCCGCC CTTTGGGTTGTGGGCAGCTCCCTGAACAAGACTGGACTCAGCACACTCCTGGGAATCTTG TATGAAGACAAGGAGAGACAGGACTTCATCTTCACCATCTACCACTGGTGGCAGGCTGTG GCCATCTTCACCGTGTACCTGGGCTCGAGCCTGCACATGAAGGCTAAGCTGGCGTTGCTG CTGGTGACGCTGGTGGCGGCCACGGTCTCCTACCTGCGGATGGAGCAGAAGCTGCGGCGG GGCGTGGCCCCGCGGCAGCCCCGCATCCCGCGGCCCCAGCACAAGGTGCGCGGTTACCGC TACTTGGAGGAGGACAACTCGGACGAGAGCGACGCGGAGGGCGATCTTGGGGACGGCGAG GAGGCGGAGGCGGAGGCTCCGCCCGCAGGGCCCAGGCCTGGCCCCGAGCCCGCTGGACTC GGCCGCCGGCCCTGCCCGGTCCGCCGAGAGCCACGATTTTTTACAGAAAATGAGCAATAA >chrUn_gl000222_5|SGP_v1.0_predicted_protein_5|240_AA MRGGYGVCSVGLEWLAYLLVPYSLGASATSLLGLLGLWLPRPVPLVAGAGVHLLLTFILF FWAPVPRVLQHSWILYVAAALWVVGSSLNKTGLSTLLGILYEDKERQDFIFTIYHWWQAV AIFTVYLGSSLHMKAKLALLLVTLVAATVSYLRMEQKLRRGVAPRQPRIPRPQHKVRGYR YLEEDNSDESDAEGDLGDGEEAEAEAPPAGPRPGPEPAGLGRRPCPVRREPRFFTENEQ* # Gene 6 (Reverse). 2 exons. 165 aa. Score = 36.51 Terminal 154053 154478 42.65 - 0 0 0.00 -1.08 34.71 48.43 AA 24:165 chrUn_gl000222_6 First 154790 154858 -6.14 - 0 0 -1.05 1.81 2.67 2.90 AA 1: 23 chrUn_gl000222_6 >chrUn_gl000222_6|SGP_v1.0_predicted_cDNA_6|495_NN ATGGGGGTGACCACAGCATACATCACTGACACCACCACACCATTCCTGGGGGGTGGTGAC ACAGCTGAACTGGGAATCCAACGGGCTAAGGAAAAAGGACACCAAGACGAAGAAGACACA GAGGTGAGGATTCACGATGACTGGGTAGTGCAGAGGGCGACAGATGGCTACAAAGCAGTC ATAGGCCATCACAGTCAGGAGCATGTCTTCCATGCATGCAAAAAGGACAAAGAAAGACAT CCGTGTCAGGCAGCCCTCATAAGAGATGACTCTGCTATGCGACTGCATGTTCACAATCAT CTTGGGAACCATGGCCAAGGTGAAACCGATGTCAGCTCAGCAGAGTTTGGAGAGGAAGAA GCACATGGGGGTGTGGAGCGGGGAGTCAGAGCTGACAGCCAGGATGCTGAGCAGGTTCCT CAGCACCGTGACCATATACATGGACAGGGACAGGGACAGCAAAGCGAGGACCGGCTGCAG TTCTGGATCCTCTGA >chrUn_gl000222_6|SGP_v1.0_predicted_protein_6|165_AA MGVTTAYITDTTTPFLGGGDTAELGIQRAKEKGHQDEEDTEVRIHDDWVVQRATDGYKAV IGHHSQEHVFHACKKDKERHPCQAALIRDDSAMRLHVHNHLGNHGQGETDVSSAEFGEEE AHGGVERGVRADSQDAEQVPQHRDHIHGQGQGQQSEDRLQFWIL* # Gene 7 (Forward). 1 exons. 55 aa. Score = 6.22 First 163127 163291 6.22 + 0 0 1.22 -3.16 12.50 15.88 AA 1: 55 chrUn_gl000222_7 >chrUn_gl000222_7|SGP_v1.0_predicted_cDNA_7|165_NN ATGGGGCCTAACCCCCTGGACCCCACTGATCTGAACGGGGCGCATTTCGACCCGGAAGTT TACCTAGACAAGCTGCATAGAGAGTGCCCTCTGGCCCAGCTGATGGACAGTGAGACAGAC ATGGTGCGGCAGATCCAGGCTCTAGACAGCGACATGCAGACCCTG >chrUn_gl000222_7|SGP_v1.0_predicted_protein_7|55_AA MGPNPLDPTDLNGAHFDPEVYLDKLHRECPLAQLMDSETDMVRQIQALDSDMQTL