## date Fri Sep 21 17:35:13 2007 ## source-version: geneid v 1.2 -- geneid@imim.es # Sequence chr9_random - Length = 1146434 bps # Optimal Gene Structure. 9 genes. Score = 6964.72 # Gene 1 (Forward). 10 exons. 639 aa. Score = 136.59 Internal 2565 2901 37.97 + 0 1 4.07 2.57 45.11 -117.95 AA 1:113 chr9_random_1 Internal 3766 4138 33.31 + 2 2 3.51 2.80 43.82 -130.55 AA 113:237 chr9_random_1 Internal 9406 9503 3.28 + 1 1 4.55 2.12 8.17 -34.30 AA 237:270 chr9_random_1 Internal 14328 14454 2.88 + 2 2 2.02 2.09 12.11 -44.45 AA 270:312 chr9_random_1 Internal 15665 15878 26.71 + 1 0 0.08 5.16 32.46 -74.90 AA 312:383 chr9_random_1 Internal 15995 16150 4.02 + 0 0 2.10 3.15 13.09 -54.60 AA 384:435 chr9_random_1 Internal 16800 16970 7.30 + 0 0 5.34 3.65 12.07 -59.85 AA 436:492 chr9_random_1 Internal 17723 17899 14.47 + 0 0 0.87 3.82 22.35 -61.95 AA 493:551 chr9_random_1 Internal 21235 21379 2.73 + 0 1 2.23 3.99 10.54 -50.75 AA 552:600 chr9_random_1 Terminal 22138 22256 3.93 + 2 0 5.21 0.00 11.13 -40.60 AA 600:639 chr9_random_1 >chr9_random_1|SGP_v1.0_predicted_cDNA_1|1917_NN GTGTGGAACCAGAACGGCAAAAGCCCCTCCATCACCTTCGAGTACACGCTGCTGCAGCCG CCACACGAGAGCCGCCCCCAGCCCATCTACTATGGCTTCTCCGAGAGCGCTGAGAGCCAG GGCCTGGACGGGGCCGGGCTGATGGGCTTCATCCCGCACAACGGCTCCCTCTACGGCCAG GCCTCCTCAGAGCGGCTGGGCCTGGACAACCGGCTGTTCGGCCACCCGGGCCTGGACATG GAGCTGGGCCCCAGCCAGGGCCAGGAGACCAACGAGGTGTGCGAGCAGGCCGGCGGCGGG GCCTGCGAGGGGCCCCCCAGGGGCAAGGGCTTCCGAGACCGCAACGTCACGGGGACTCCT CTCACCGGGGACAAGGATGACGAAGAGGTTGACACCCACTTCGCCTCCCAGGAGTTCTTC TCGGCTAACGCCATCTCTGACCAGCTGCTGGGCGCAGGCTCTGACTTGAAGGACTTCACC CTCAATGAGACTGTGAACAGCATCTTTGCACAGGGCGCCCCAAGGAGCTCCCTGGCCGAG AGCTTCTTCGTGGATTATGAGGAGAACGAGGGGGCTGGCCCTTACCTGCTCAACGGGTCC TACCTGGAGCTGAGCAGCGACAGGGTTGCCAACAGCTCCTCCGAGGCCCCATTCCCCAAC GTTAGCACCAGCCTGCTCACCTCGGCCGGGAACAGGACTCACAAGGCCAGGACCAGGCCC AAGGCGCGCAAGCAAGGCGTGAGTCCCGCGGACATGTACCGGTGGAAGCTCTCGTCCCAC GAGCCCTGCAGTGCCACCTGCACCACAGGGGTCATGTCTGCGTACGCCATGTGTGTCCGC TATGATGGCGTCGAGGTGGATGACAGCTACTGTGACGCCCTGACCCGTCCCGAGCCTGTC CACGAGTTCTGCGCTGGGAGGGAGTGCCAGCCCAGGTGGGAGACGAGCAGCTGGAGCGAG TGTTCGCGCACCTGCGGAGAGGGCTACCAGTTCCGCGTCGTGCGCTGCTGGAAGATGCTC TCGCCCGGCTTCGACAGCTCCGTGTACAGCGACCTGTGCGAGGCAGCCGAGGCCGTGCGG CCCGAGGAACGCAAGACCTGCCGGAACCCCGCCTGCGGGCCCCAGTGGGAGATGTCGGAG TGGTCCGAGTGCACTGCCAAGTGTGGGGAGCGCAGTGTGGTGACCAGGGACATCCGCTGC TCGGAGGATGAGAAGCTGTGTGACCCCAACACCAGGCCTGTAGGGGAGAAGAACTGCACG GGCCCGCCCTGTGACCGGCAGTGGACCGTCTCCGACTGGGGACCGTGCAGTGGAAGCTGC GGGCAAGGCCGCACCATCAGGCACGTGTACTGCAAGACCAGCGACGGACGGGTAGTACCT GAGTCCCAGTGCCAGATGGAGACCAAGCCTCTGGCCATCCACCCCTGTGGGGACAAAAAC TGTCCCGCCCACTGGCTGGCCCAGGACTGGGAGCGGTGCAACACCACCTGCGGGCGCGGG GTCAAGAAGCGGCTGGTGCTCTGCATGGAGCTGGCCAACGGGAAGCCGCAGACGCGCAGT GGCCCCGAGTGCGGGCTCGCCAAGAAGCCTCCCGAGGAGAGCACGTGTTTCGAGAGGCCC TGCTTCAAGTGGTACACCAGCCCCTGGTCAGAGTGCACCAAGACCTGCGGGGTGGGCGTG AGGATGCGAGACGTCAAGTGCTACCAGGGGACCGACATCGTCCGTGGTTGCGATCCGTTG GTGAAGCCCGTTGGCAGACAGGCCTGTGATCTGCAGCCCTGCCCCACGGAGCCCCCAGAT GACAGCTGCCAGGACCAGCCAGGCACCAACTGTGCCCTGGCCATCAAAGTGAACCTCTGC GGGCACTGGTACTACAGCAAGGCGTGCTGCCGCTCCTGCAGGCCCCCCCACTCCTAG >chr9_random_1|SGP_v1.0_predicted_protein_1|639_AA VWNQNGKSPSITFEYTLLQPPHESRPQPIYYGFSESAESQGLDGAGLMGFIPHNGSLYGQ ASSERLGLDNRLFGHPGLDMELGPSQGQETNEVCEQAGGGACEGPPRGKGFRDRNVTGTP LTGDKDDEEVDTHFASQEFFSANAISDQLLGAGSDLKDFTLNETVNSIFAQGAPRSSLAE SFFVDYEENEGAGPYLLNGSYLELSSDRVANSSSEAPFPNVSTSLLTSAGNRTHKARTRP KARKQGVSPADMYRWKLSSHEPCSATCTTGVMSAYAMCVRYDGVEVDDSYCDALTRPEPV HEFCAGRECQPRWETSSWSECSRTCGEGYQFRVVRCWKMLSPGFDSSVYSDLCEAAEAVR PEERKTCRNPACGPQWEMSEWSECTAKCGERSVVTRDIRCSEDEKLCDPNTRPVGEKNCT GPPCDRQWTVSDWGPCSGSCGQGRTIRHVYCKTSDGRVVPESQCQMETKPLAIHPCGDKN CPAHWLAQDWERCNTTCGRGVKKRLVLCMELANGKPQTRSGPECGLAKKPPEESTCFERP CFKWYTSPWSECTKTCGVGVRMRDVKCYQGTDIVRGCDPLVKPVGRQACDLQPCPTEPPD DSCQDQPGTNCALAIKVNLCGHWYYSKACCRSCRPPHS* # Gene 2 (Reverse). 2 exons. 167 aa. Score = 60.74 Terminal 26413 26820 61.41 - 0 0 0.00 3.65 68.82 -141.75 AA 32:167 chr9_random_2 First 27522 27614 -0.67 - 0 0 0.59 0.80 10.15 -32.55 AA 1: 31 chr9_random_2 >chr9_random_2|SGP_v1.0_predicted_cDNA_2|501_NN ATGACAGCCGGGACCGTGGTCATCACCGGGGGCATCTTGGCGACTGTGATTTTGCTCTGC ATCATCGCTGTTCTGTGCTACTGCCGGCTCCAGTACTACTGCTGCAAGAAGGACGAGTCG GAGGAGGACGAGGAGGAACCAGACTTCGCCGTTCACTCGCACCTGCCCCCGCTGCACTCC AACCGCAACCTGGTGCTGACCAACGGGCCGGCGCTCTACCCCACCGCCTCCACCTCCTTC AGCCAGAAGTCCCCGCAGGCCCGCGCCCTCTGCCGCAGCTGCTCCCACTGCGAGCCCCCC ACCTTCTTCCTGCAGGAGCCGCCGGAGGAGGAAGAGGACGTGCTGAACGGCGGGGAGCGC GTGCTCTACAAGAGCGTGAGCCAGGAGGACGTGGAGCTGCCCCGGGGGGCTTTCGGGGGC CTGCAGGCGCTCAACCCCAACCGCCTCTCAGCCATGCGGGAGGCCTTCGCCAGGAGCCGC AGCATCAGCACCGACGTGTGA >chr9_random_2|SGP_v1.0_predicted_protein_2|167_AA MTAGTVVITGGILATVILLCIIAVLCYCRLQYYCCKKDESEEDEEEPDFAVHSHLPPLHS NRNLVLTNGPALYPTASTSFSQKSPQARALCRSCSHCEPPTFFLQEPPEEEEDVLNGGER VLYKSVSQEDVELPRGAFGGLQALNPNRLSAMREAFARSRSISTDV* # Gene 3 (Reverse). 3 exons. 173 aa. Score = 11.48 Terminal 106148 106488 12.04 - 2 0 0.00 2.27 31.80 -118.30 AA 60:173 chr9_random_3 Internal 135573 135716 5.53 - 2 1 4.60 4.28 10.32 -50.40 AA 12: 60 chr9_random_3 First 140739 140772 -6.09 - 0 1 1.79 1.81 1.62 -11.90 AA 1: 12 chr9_random_3 >chr9_random_3|SGP_v1.0_predicted_cDNA_3|519_NN ATGGAGCTCAAGGGTATTCCTTGTATATGGGAAGGTGCTGGATTAAACGATGGGCAGTGG CACTCTGTGTCCTTCTCTGCCAAGTGGAGCCATATGAATGTGGTGGTGGACGATGACACA GCTGTTCAGCCCCTGGTGGCTGTGCTCATTGATTCAGGTGACACCTATTATTTTGGAGAG AAAGACCAAGAGTCACCCCGAGATTTTCCTTATGAAGAGGATTCAAGACCTCAGTCACGG TCTTCCAAAGCAGCCATTCCTCCCCCAGTGAAGGAGGAACAGGACAGACTGAGATCTCCA AACCGTCCTAGCAGCTCCTTCCTCGCTAACGTGGTGGGAACGGTGGTGCACAACATCATG CAGAAGCGCAGCTTCCGGGAAGGCTGGGGCCTCGGGGAGCACCTGCAGGGGCTTCGAGAC GCCTTTCCGGTGGGGAAGACTAGCAAATCAGGCGGCAAGATCATCGTGGGCGACGCCGCA GAGAAAGATGCATTGAAAGATCAGGTACAAATCCACTGA >chr9_random_3|SGP_v1.0_predicted_protein_3|173_AA MELKGIPCIWEGAGLNDGQWHSVSFSAKWSHMNVVVDDDTAVQPLVAVLIDSGDTYYFGE KDQESPRDFPYEEDSRPQSRSSKAAIPPPVKEEQDRLRSPNRPSSSFLANVVGTVVHNIM QKRSFREGWGLGEHLQGLRDAFPVGKTSKSGGKIIVGDAAEKDALKDQVQIH* # Gene 4 (Reverse). 4 exons. 93 aa. Score = 6654.38 Terminal 179998 180006 6634.07 - 0 0 0.00 -2.41 0.40 34998.25 AA 91: 93 chr9_random_4 Internal 180555 180580 -3.44 - 2 0 1.38 4.77 1.08 -9.10 AA 82: 90 chr9_random_4 Internal 188697 188900 23.35 - 2 1 5.43 2.01 27.84 -71.40 AA 14: 82 chr9_random_4 First 212493 212532 0.40 - 0 1 1.01 1.66 7.67 -14.00 AA 1: 14 chr9_random_4 >chr9_random_4|SGP_v1.0_predicted_cDNA_4|279_NN ATGGAAGGAGATAATGACGGCGATGCAGAAAAACGAGACTCAGACTCCGCGTGGACGGTG GTGCGGCACGGTGGCCCCGACGCGGTGACCCTCCGAGGTGCCCCCAGCGGGCACCCGCGC TCGGCTGTGTCCTTCGCGTACGCAGCGGGCGCGGGGCAGCTGCGGGCCGCGGTGAACCTG GCGGAGCGCTGCGAGCAGCGGCTGGCTCTGCGCTGCGGGACAGCGCGGCGCCCGGACTCA CGAGCTTCCAGTAGACAGGTCTATCCAACAGCACTATAA >chr9_random_4|SGP_v1.0_predicted_protein_4|93_AA MEGDNDGDAEKRDSDSAWTVVRHGGPDAVTLRGAPSGHPRSAVSFAYAAGAGQLRAAVNL AERCEQRLALRCGTARRPDSRASSRQVYPTAL* # Gene 5 (Reverse). 2 exons. 73 aa. Score = 4.73 Terminal 347852 347869 -6.74 - 0 0 0.00 3.34 0.87 -5.25 AA 68: 73 chr9_random_5 First 348576 348776 11.47 - 0 0 4.38 2.00 18.74 -70.35 AA 1: 67 chr9_random_5 >chr9_random_5|SGP_v1.0_predicted_cDNA_5|219_NN ATGGGAGAGAAGAAGGAGAGCGGTGGAGGGGGTGACGCGGCTATTGCGGAGGGAGGCGCA GGGGCCGCAGCCAGCCGGGTGCTGCAGCAGTGCGGGCAGCTCCAGAAGCTCATTGGCATC TCCTTTGGCAGCCTGCGTTGGCTGCGCACCAAGTGCGCTGAGTCCAAAGACCTCACCCAG CAGGAGATACGGACCGTGCAGATGTCTGTGTACTTTTAA >chr9_random_5|SGP_v1.0_predicted_protein_5|73_AA MGEKKESGGGGDAAIAEGGAGAAASRVLQQCGQLQKLIGISFGSLRWLRTKCAESKDLTQ QEIRTVQMSVYF* # Gene 6 (Reverse). 2 exons. 223 aa. Score = 16.71 Terminal 799097 799486 4.40 - 0 0 0.00 -1.28 32.15 -135.45 AA 94:223 chr9_random_6 First 800135 800413 12.32 - 0 0 1.51 3.00 25.57 -97.65 AA 1: 93 chr9_random_6 >chr9_random_6|SGP_v1.0_predicted_cDNA_6|669_NN ATGAAGGCGACCGAGAGTGCGGCGCAGCCGGTGCCGCTGCCCAAGAAGGAAGTGGATGTC AGCCCCAAACAGGATGAAGGAGTGCTGAAAGTCATCAAGACAGAGGGCACAGGTACAGAG ATGCCCATGACTGGGGACCTAGTCTTTGTCCACTACACTGGCTGGCTGTTAGAGGGCACA AAGTTTGACTCCAGTGTGGATCGCAAGGACAAATTCTCCTTTGACCTGGGAAAAGGGGAG GTCATCAAGGCTTGGGACATTGCCGTAGCAACCATGAAGCTGAAACTACAGGCCTTCTCT GCTGCCATTGAAAGCTGTAACAAGGCCCTAGAACTGGACAGCAACAACGAGAAGGGCCCC TTCCGCCGGGGAGAGGCCCACCTGGCGGTGAATGACTTTGAACTGGCATGGGCTGACTTC CAGAAGGTCCTGCAGCTCTACCCCAACAACAAAGCCGCCAGGGCCCAGCTGGCTGTGTGT CAGCAGCGGATCCACAGGCAGCTTGCCCGGAAGAAGTTCTATGCCAAAATGTTTGAGAGG CTGGCTGAGGAGGAGAACAAGGCCAAGGCAGAGGCTTGCTCAGGAGACCATCCCACTGAC ACAGAGATGAAGGCGGAGTGGAAGAGCAACACGGCAGGGAGCCAGTCTCAGGTGGAGACA GAAGCATAG >chr9_random_6|SGP_v1.0_predicted_protein_6|223_AA MKATESAAQPVPLPKKEVDVSPKQDEGVLKVIKTEGTGTEMPMTGDLVFVHYTGWLLEGT KFDSSVDRKDKFSFDLGKGEVIKAWDIAVATMKLKLQAFSAAIESCNKALELDSNNEKGP FRRGEAHLAVNDFELAWADFQKVLQLYPNNKAARAQLAVCQQRIHRQLARKKFYAKMFER LAEEENKAKAEACSGDHPTDTEMKAEWKSNTAGSQSQVETEA* # Gene 7 (Forward). 1 exons. 233 aa. Score = 25.32 Single 1126836 1127534 25.32 + 0 0 3.60 0.00 56.66 -243.60 AA 1:233 chr9_random_7 >chr9_random_7|SGP_v1.0_predicted_cDNA_7|699_NN ATGGAGGCCATGAAGATTGTCCACCCTGAAAAGTTCCCTGAGCTACCGGCTGCCCCCTGC TTCCCGCCTGCTCCCCGGCCCACCCCAACTCTGGCACCCAAGCGTGCCTGGCCCTCAGAC ACAGAGATCATTGTCAACCAGGCCTGTGGGGGGGACATGCCTGCCTTGGAAGGGGCACCC CATACCCCGCCACTGCCACGGCGGCCCCGTAAGGGAAGCTCGGAGCTGGGCTTTCCCCGC GTGGCCCCAGAGGATGAGGTCATTGTGAATCAGTACGTGATTCGGCCTGGCCCCTCGGCC TCGGCGGCTTCTTCGGCGGCGGCAGGCGAGCCCCTGGAGTGCCCCACCTGTGGGCACTCC TACAATGTCACCCAGCGGAGGCCCCGCGTGCTGTCCTGCCTGCACTCTGTGTGTGAGCAG TGCCTGCAGATTCTCTACGAGTCCTGCCCCAAGTACAAGTTCATCTCCTGCCCCACCTGC CGCCGTGAGACTGTGCTCTTCACCGACTACGGCCTGGCCGCGCTGGCTGTCAACACGTCC ATCCTGAGCCGCCTGCCGCCTGAGGCGCTGACGGCCCCATCCGGGGGTCAGTGGGGGGCT GAGCCCGAGGGCAGCTGCTACCAGACCTTCCGGCAGTACTGTGGGGCCGCGTGCACCTGC CACGTGCGGAACCCACTGTCCGCCTGCTCCATCATGTAG >chr9_random_7|SGP_v1.0_predicted_protein_7|233_AA MEAMKIVHPEKFPELPAAPCFPPAPRPTPTLAPKRAWPSDTEIIVNQACGGDMPALEGAP HTPPLPRRPRKGSSELGFPRVAPEDEVIVNQYVIRPGPSASAASSAAAGEPLECPTCGHS YNVTQRRPRVLSCLHSVCEQCLQILYESCPKYKFISCPTCRRETVLFTDYGLAALAVNTS ILSRLPPEALTAPSGGQWGAEPEGSCYQTFRQYCGAACTCHVRNPLSACSIM* # Gene 8 (Reverse). 1 exons. 137 aa. Score = 47.36 Single 1139463 1139873 47.36 - 0 0 0.00 3.63 58.73 -142.80 AA 1:137 chr9_random_8 >chr9_random_8|SGP_v1.0_predicted_cDNA_8|411_NN ATGCTCTTCTCGCTCCGGGAGCTGGTGCAGTGGCTAGGCTTCGCCACCTTCGAGATCTTC GTGCACCTGCTGGCCCTGTTGGTGTTCTCTGTGCTGCTGGCACTGCGTGTGGATGGCCTG GTCCCGGGCCTCTCCTGGTGGAACGTGTTCGTGCCTTTCTTCGCCGCTGACGGGCTCAGC ACCTACTTCACCACCATCGTGTCCGTGCGCCTCTTCCAGGATGGAGAGAAGCGGCTGGCG GTGCTCCGCCTTTTCTGGGTACTTACGGTCCTGAGTCTCAAGTTCGTCTTCGAGATGCTG TTGTGCCAGAAGCTGGCGGAGCAGACTCGGGAGCTCTGGTTCGGCCTCATTACGTCCCCG CTCTTCATTCTCCTGCAGCTGCTCATGATCCGCGCCTGTCGGGTCAACTAG >chr9_random_8|SGP_v1.0_predicted_protein_8|137_AA MLFSLRELVQWLGFATFEIFVHLLALLVFSVLLALRVDGLVPGLSWWNVFVPFFAADGLS TYFTTIVSVRLFQDGEKRLAVLRLFWVLTVLSLKFVFEMLLCQKLAEQTRELWFGLITSP LFILLQLLMIRACRVN* # Gene 9 (Forward). 2 exons. 47 aa. Score = 7.42 First 1140435 1140478 -3.01 + 0 2 -0.83 2.74 5.49 -15.40 AA 1: 15 chr9_random_9 Internal 1141659 1141757 10.42 + 1 2 2.65 2.59 15.01 -34.65 AA 15: 47 chr9_random_9 >chr9_random_9|SGP_v1.0_predicted_cDNA_9|143_NN ATGGACTTTGCCGTCCTGGGCCTCGGGGACTCCTCATACGCCAAGTTCAACTTCGTGGCC AAGAAGCTGCACCGACGGCTACTGCAGCTTGGGGGCAGCGCCCTCCTGCCCGTGTGCCTG GGCGATGACCAGCATGAGCTGGG >chr9_random_9|SGP_v1.0_predicted_protein_9|47_AA MDFAVLGLGDSSYAKFNFVAKKLHRRLLQLGGSALLPVCLGDDQHELg