## date Fri Sep 21 17:35:10 2007 ## source-version: geneid v 1.2 -- geneid@imim.es # Sequence chr8_random - Length = 943810 bps # Optimal Gene Structure. 6 genes. Score = 458.17 # Gene 1 (Forward). 3 exons. 289 aa. Score = 113.73 First 399499 399613 9.23 + 0 1 0.12 4.53 14.83 -40.25 AA 1: 39 chr8_random_1 Internal 401552 401812 43.40 + 2 1 4.76 1.45 45.86 -91.35 AA 39:126 chr8_random_1 Terminal 401993 402483 61.09 + 2 0 -0.86 0.00 77.60 -170.80 AA 126:289 chr8_random_1 >chr8_random_1|SGP_v1.0_predicted_cDNA_1|867_NN ATGCCCAGGTCCTTCCTGGTCAAGAAGGTCAAACTTGACGCGTTCTCTTCGGCCGACCTG GAGAGCGCCTACGGACGCGCCCGCAGCGACCTCGGCGCGCCACTGCACGATAAAGGGTAC CTCAGCGACTACGTGGGGCCCTCGTCCGTCTACGATGGCGACGCCGAGGCTGCGCTGCTC AAAGGGCCGTCGCCGGAGCCCATGTACGCAGCAGCTGTGCGTGGAGAGCTGGGTCCGGCG GCTGCAGGGTCTGCGCCGCCGCCCACCCCGCGCCCGGAGCTGGCCACCGCTGCGGGCGGC TACATCAACGGCGACGCGGCCGTCAGCGAGGGCTACGCGGCGGACGCCTTCTTCATCACC GACGGGCGCTCGCGGCGTGCTGGCGGCCGGCACGCGTGCGGCGAGTGCGGCAAAACATAC GCCACGTCGTCGAACCTGAGCCGCCACAAGCAGACGCACCGCAGCCTGGACAGCCAGCTG GCGCGGCGCTGCCCGACGTGCGGCAAGGTGTACGTGTCCATGCCGGCCATGGCCATGCAC CTGCTCACGCACGACCTGCGCCACAAGTGCGGCGTGTGCGGCAAAGCCTTCTCGCGGCCC TGGCTGCTGCAGGGCCACATGCGCTCGCACACCGGCGAGAAACCCTTCGGCTGCGCGCAC TGCGGCAAGGCCTTCGCCGACCGCTCCAACCTGCGCGCGCACATGCAGACGCATTCGGCC TTCAAGCACTTCCAGTGCAAGCGCTGCAAGAAGAGCTTCGCGCTCAAGTCCTATCTCAAC AAGCACTACGAGTCGGCCTGCTTCAAGGGCGGCGCCGGAGGCCCCGCGGCTCCTGCGCCG CCACAGCTCAGCCCTGTGCAGGCCTAG >chr8_random_1|SGP_v1.0_predicted_protein_1|289_AA MPRSFLVKKVKLDAFSSADLESAYGRARSDLGAPLHDKGYLSDYVGPSSVYDGDAEAALL KGPSPEPMYAAAVRGELGPAAAGSAPPPTPRPELATAAGGYINGDAAVSEGYAADAFFIT DGRSRRAGGRHACGECGKTYATSSNLSRHKQTHRSLDSQLARRCPTCGKVYVSMPAMAMH LLTHDLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSA FKHFQCKRCKKSFALKSYLNKHYESACFKGGAGGPAAPAPPQLSPVQA* # Gene 2 (Forward). 17 exons. 489 aa. Score = 106.52 First 409031 409230 10.67 + 0 2 4.98 1.16 18.37 -70.00 AA 1: 67 chr8_random_2 Internal 414259 414346 2.82 + 1 0 2.22 3.28 8.64 -30.80 AA 67: 96 chr8_random_2 Internal 416599 416639 5.65 + 0 2 4.85 2.53 6.35 -14.35 AA 97:110 chr8_random_2 Internal 416747 416832 -3.57 + 1 1 2.74 2.55 4.11 -30.10 AA 110:139 chr8_random_2 Internal 416916 416968 6.21 + 2 0 3.87 3.01 7.89 -18.55 AA 139:156 chr8_random_2 Internal 417101 417206 -2.81 + 0 1 2.53 1.84 6.66 -37.10 AA 157:192 chr8_random_2 Internal 417305 417406 4.67 + 2 1 0.81 2.00 13.64 -35.70 AA 192:226 chr8_random_2 Internal 417498 417572 1.54 + 2 1 1.86 3.39 7.36 -26.25 AA 226:251 chr8_random_2 Internal 417650 417753 11.01 + 2 0 4.29 1.99 14.53 -36.40 AA 251:285 chr8_random_2 Internal 417845 417883 4.99 + 0 0 4.97 5.66 2.18 -13.65 AA 286:298 chr8_random_2 Internal 417955 417996 5.73 + 0 0 3.14 4.98 5.63 -14.70 AA 299:312 chr8_random_2 Internal 418079 418123 9.32 + 0 0 0.69 4.68 11.44 -15.75 AA 313:327 chr8_random_2 Internal 418222 418334 11.66 + 0 2 3.28 3.39 15.01 -39.55 AA 328:365 chr8_random_2 Internal 418415 418480 6.64 + 1 2 3.67 4.08 7.87 -23.10 AA 365:387 chr8_random_2 Internal 418558 418645 6.14 + 1 0 4.20 2.87 9.33 -30.80 AA 387:416 chr8_random_2 Internal 418752 418814 3.14 + 0 0 2.58 4.94 5.42 -22.05 AA 417:437 chr8_random_2 Terminal 418958 419113 22.72 + 0 0 3.56 0.00 28.46 -53.55 AA 438:489 chr8_random_2 >chr8_random_2|SGP_v1.0_predicted_cDNA_2|1467_NN ATGGGCGACCGCGGCAGCTCCCGGCGCCGGAGGACAGGGTCGCGGCCCTCGAGCCACGGC GGCGGCGGGCCTGCGGCGGCGGAAGAGGAGGTGCGGGACGCCGCTGCGGGCCCCGACGTG GGAGCCGCGGGGGACGCGCCAGCCCCGGCCCCCAACAAGGACGGAGACGCCGGCGTGGGC AGCGGCCACTGGGAGCTGAGGTGCCATCGCCTGCAGGATTCTTTATTCAGCTCTGACAGT GGCTTCAGCAACTACCGTGGCATCCTGAACTGGTGTGTGGTGATGCTGATCTTGAGCAAT GCCCGGTTATTTCTGGAGAACCTCATCAAGTATGGCATCCTGGTGGACCCCATCCAGGTG GTTTCTCTGTTCCTGAAGGATCCCTATAGCTGGCCCGCCCCATGCCTGGTTATTGCGGCC AATGTCTTTGCTGTGGCTGCATTCCAGGTTGAGAAGCGCCTGGCGGTGGGTGCCCTGACG GAGCAGGCGGGACTGCTGCTGCACGTGGCCAACCTGGCCACCATTCTGTGTTTCCCAGCG GCTGTGGTCTTACTGGTTGAGTCTATCACTCCAGTGGGCTCCCTGCTGGCGCTGATGGCG CACACCATCCTCTTCCTCAAGCTCTTCTCCTACCGCGACGTCAACTCATGGTGCCGCAGG GCCAGGGCCAAGGCTGCCTCTGCAGGGAAGAAGGCCAGCAGTGCTGCTGCCCCGCACACC GTGAGCTACCCGGACAATCTGACCTACCGCGATCTCTACTACTTCCTCTTCGCCCCCACC TTGTGCTACGAGCTCAACTTTCCCCGCTCTCCCCGCATCCGGAAGCGCTTTCTGCTGCGA CGGATCCTTGAGATGCTGTTCTTCACCCAGCTCCAGGTGGGGCTGATCCAGCAGTGGATG GTCCCCACCATCCAGAACTCCATGAAGCCCTTCAAGGACATGGACTACTCACGCATCATC GAGCGCCTCCTGAAGCTGGCGGTCCCCAATCACCTCATCTGGCTCATCTTCTTCTACTGG CTCTTCCACTCCTGCCTGAATGCCGTGGCTGAGCTCATGCAGTTTGGAGACCGGGAGTTC TACCGGGACTGGTGGAACTCCGAGTCTGTCACCTACTTCTGGCAGAACTGGAACATCCCT GTGCACAAGTGGTGCATCAGACACTTCTACAAGCCCATGCTTCGACGGGGCAGCAGCAAG TGGATGGCCAGGACAGGGGTGTTCCTGGCCTCGGCCTTCTTCCACGAGTACCTGGTGAGC GTCCCTCTGCGAATGTTCCGCCTCTGGGCGTTCACGGGCATGATGGCTCAGATCCCACTG GCCTGGTTCGTGGGCCGCTTTTTCCAGGGCAACTATGGCAACGCAGCTGTGTGGCTGTCG CTCATCATCGGACAGCCAATAGCCGTCCTCATGTACGTCCACGACTACTACGTGCTCAAC TATGAGGCCCCAGCGGCAGAGGCCTGA >chr8_random_2|SGP_v1.0_predicted_protein_2|489_AA MGDRGSSRRRRTGSRPSSHGGGGPAAAEEEVRDAAAGPDVGAAGDAPAPAPNKDGDAGVG SGHWELRCHRLQDSLFSSDSGFSNYRGILNWCVVMLILSNARLFLENLIKYGILVDPIQV VSLFLKDPYSWPAPCLVIAANVFAVAAFQVEKRLAVGALTEQAGLLLHVANLATILCFPA AVVLLVESITPVGSLLALMAHTILFLKLFSYRDVNSWCRRARAKAASAGKKASSAAAPHT VSYPDNLTYRDLYYFLFAPTLCYELNFPRSPRIRKRFLLRRILEMLFFTQLQVGLIQQWM VPTIQNSMKPFKDMDYSRIIERLLKLAVPNHLIWLIFFYWLFHSCLNAVAELMQFGDREF YRDWWNSESVTYFWQNWNIPVHKWCIRHFYKPMLRRGSSKWMARTGVFLASAFFHEYLVS VPLRMFRLWAFTGMMAQIPLAWFVGRFFQGNYGNAAVWLSLIIGQPIAVLMYVHDYYVLN YEAPAAEA* # Gene 3 (Reverse). 11 exons. 376 aa. Score = 95.52 Terminal 421337 421542 18.34 - 2 0 0.00 2.96 28.35 -71.05 AA 308:376 chr8_random_3 Internal 421752 421821 3.10 - 0 1 1.41 6.06 5.79 -24.50 AA 285:308 chr8_random_3 Internal 422221 422326 8.56 - 1 0 2.93 -0.20 16.77 -37.10 AA 249:284 chr8_random_3 Internal 424001 424137 3.47 - 0 2 1.69 3.54 11.78 -47.95 AA 204:249 chr8_random_3 Internal 424236 424332 8.78 - 1 0 5.20 3.01 10.43 -33.95 AA 171:203 chr8_random_3 Internal 424455 424516 0.77 - 0 2 0.46 6.33 4.46 -21.70 AA 151:171 chr8_random_3 Internal 424588 424663 1.81 - 1 0 1.51 1.60 9.96 -26.60 AA 125:150 chr8_random_3 Internal 425941 426065 14.32 - 0 2 0.72 1.44 22.52 -43.75 AA 84:125 chr8_random_3 Internal 426246 426382 11.96 - 2 0 1.00 4.06 18.17 -47.95 AA 38: 83 chr8_random_3 Internal 426823 426931 27.50 - 0 1 1.76 4.92 26.36 -38.15 AA 2: 38 chr8_random_3 First 438518 438520 -3.08 - 0 0 2.40 2.63 0.00 -1.05 AA 1: 1 chr8_random_3 >chr8_random_3|SGP_v1.0_predicted_cDNA_3|1128_NN ATGAGCGGGAACAGCTTCCACGTGTTCGACCAGGGCCAGTTTGCCAAGGAGGTGCTGCCC AAGTACTTCAAGCACAACAACATGGCCAGCTTCGTGCGGCAGCTCAACATGTATGGCTTC CGGAAAGTGGTCCACATCGAGCAGGGCGGCCTGGTCAAGCCAGAGAGAGACGACACGGAG TTCCAGCACCCATGCTTCCTGCGTGGCCAGGAGCAGCTCCTTGAGAACATCAAGAGGAAA GTGACCAGTGTGTCCACCCTGAAGAGTGAAGACATAAAGATCCGCCAGGACAGCGTCACC AAGCTGCTGACGGACGTGCAGCTGATGAAGGGGAAGCAGGAGTGCATGGACTCCAAGCTC CTGGCCATGAAGCATGAGAATGAGGCTCTGTGGCGGGAGGTGGCCAGCCTTCGGCAGAAG CATGCCCAGCAACAGAAAGTCGTCAACAAGCTCATTCAGTTCCTGATCTCACTGGTGCAG TCAAACCGGATCCTGGGGGTGAAGAGAAAGATCCCCCTGATGCTGAACGACAGTGGCTCA GCACATTCCATGCCCAAGTATAGCCGGCAGTTCTCCCTGGAGCACGTCCACGGCTCGGGC CCCTACTCGGCCCCCTCCCCAGCCTACAGCAGCTCCAGCCTCTACGCCCCTGATGCTGTG GCCAGCTCTGGACCCATCATCTCCGACATCACCGAGCTGGCTCCTGCCAGCCCCATGGCC TCCCCCGGCGGGAGCATAGACGAGAGGAATGAGCTCAGTGACCACTTGGATGCTATGGAC TCCAACCTGGATAACCTGCAGACCATGCTGAGCAGCCACGGCTTCAGCGTGGACACCAGT GCCCTGCTGGACCTGTTCAGCCCCTCGGTGACCGTGCCCGACATGAGCCTGCCTGACCTT GACAGCAGCCTGGCCAGTGTGCGGAAGCAGCTGGTGCACTACACAGCGCAGCCGCTGTTC CTGCTGGACCCCGGCTCCGTGGACACCGGGAGCAACGACCTGCCGGTGCTGTTTGAGCTG GGAGAGGGCTCCTACTTCTCCGAAGGGGACGGCTTCGCCGAGGACCCCACCATCTCCCTG CTGACAGGCTCGGAGCCTCCCAAAGCCAAGGACCCCACTGTCTCCTAG >chr8_random_3|SGP_v1.0_predicted_protein_3|376_AA MSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTE FQHPCFLRGQEQLLENIKRKVTSVSTLKSEDIKIRQDSVTKLLTDVQLMKGKQECMDSKL LAMKHENEALWREVASLRQKHAQQQKVVNKLIQFLISLVQSNRILGVKRKIPLMLNDSGS AHSMPKYSRQFSLEHVHGSGPYSAPSPAYSSSSLYAPDAVASSGPIISDITELAPASPMA SPGGSIDERNELSDHLDAMDSNLDNLQTMLSSHGFSVDTSALLDLFSPSVTVPDMSLPDL DSSLASVRKQLVHYTAQPLFLLDPGSVDTGSNDLPVLFELGEGSYFSEGDGFAEDPTISL LTGSEPPKAKDPTVS* # Gene 4 (Forward). 3 exons. 105 aa. Score = 28.24 First 513291 513293 -4.27 + 0 0 3.77 0.47 0.00 -1.05 AA 1: 1 chr8_random_4 Internal 514746 515019 38.14 + 0 1 4.10 2.64 42.07 -95.90 AA 2: 93 chr8_random_4 Terminal 526658 526695 -5.63 + 2 0 3.16 0.00 2.85 -12.25 AA 93:105 chr8_random_4 >chr8_random_4|SGP_v1.0_predicted_cDNA_4|315_NN ATGGGCCCCGAGCTCCACGGCTGGCGCCCCCCAGTGGACTGTGTCCGGGCCAATGAGCTG TGTGCCGCCGAATCCAACTGCAGCTCTCGCTACCGCACTCTGCGGCAGTGCCTGGCAGGC CGCGACCGCAACACCATGCTGGCCAACAAGGAGTGCCAGGCGGCCTTGGAGGTCTTGCAG GAGAGCCCGCTGTACGACTGCCGCTGCAAGCGGGGCATGAAGAAGGAGCTGCAGTGTCTG CAGATCTACTGGAGCATCCACCTGGGGCTGACCGAGGAATTCACCAGTGAGAAATCCCGA GGTGTGAGCCACTGA >chr8_random_4|SGP_v1.0_predicted_protein_4|105_AA MGPELHGWRPPVDCVRANELCAAESNCSSRYRTLRQCLAGRDRNTMLANKECQAALEVLQ ESPLYDCRCKRGMKKELQCLQIYWSIHLGLTEEFTSEKSRGVSH* # Gene 5 (Reverse). 1 exons. 422 aa. Score = 107.60 Single 587553 588818 107.60 - 0 0 0.00 -0.24 148.45 -442.05 AA 1:422 chr8_random_5 >chr8_random_5|SGP_v1.0_predicted_cDNA_5|1266_NN ATGGCATGCAAGACCACCGCCACCACCAGCTCTAAGCGAATCGTCCGTCGTGCATCCTTA CCGAGTTTGAGTTTGAAGAAACCCATTATCCTCCGAAGCTCTGGGTGCCAAGTCCCCACC GTCCTCCGCCGAGGCTATCTCCAACTGTTCACCGAAGAGTGTCTCAAGTTCTGCGCCTCC AAGCAGGAGGCCGAGGAGAAGGCGCTGAACGAGGAGAAGGTGGCCTACGACTGCAGCCCC AACAAGAACAGGTACCTGAACGTGGTCCTGAACACCCTCAAGAGACTGAAGGGCCTGACC CCCAGCTCCATGCCCGGCCTCAGCAGGGCCGCCCTGTACAGCCACCTCCAGGAGTTCCTG CTCACCCAGGACCAGCTCAAGGAGAACGGCTACCCCTTCCCGCACCCCGAGCGGCCCGGA GGCGCCGTCCTCTTCACTGGCCAGGGGAAGGGGCCCGGCGACTCCTCCTGCAGGGTCTGC TGCCGTTGTGGCACCGAGTACCTGGTATCCTCCTCGGGCCGCTGTGTACGCGACCAGTTG TGTTATTATCACTGGGGGCGGGTCCGCTCGAGCCAGGTGGCTGGAGGCCGGGTTAGCCAG TACACCTGCTGTGCAGCTGCTCCTGGCTCTGTGGGCTGCCAGGTGGCAAAGCAGCACGTG CGGGACGGCCGCAAGGAGAGCCTCGATGGCTTCGTGGAGACCTTCAAGAAAGAGTTGTCC AGAGACGCTTATCCAGGAATCTACGCCTTGGACTGTGAGATGTGCTACACCACGCATGGC CTAGAGCTGACCCGCGTCACCGTGGTGGACGCCGACATGCGAGTGGTGTACGACACCTTC GTCAAGCCCGACAACGAGATCGTGGACTACAACACCAGGTTTTCCGGAGTCACCGAGGCC GACGTCGCCAAGACGAGCATCACGTTGCCCCAAGTCCAAGCCATCCTGCTGAGCTTTTTC AGCGCCCAAACCATCCTCATCGGGCACAGCCTGGAGAGCGACCTGCTGGCCCTGAAGCTC ATCCACAGCACCGTGGTGGACACGGCCGTGCTCTTCCCGCACTACCTGGGTTTCCCCTAC AAGCGCTCCCTCAGGAATCTCGCGGCTGACTACCTGGCACAGATCATCCAGGACAGCCAG GACGGCCACAACTCCAGCGAGGACGCAAGCGCCTGCCTGCAGCTGGTGATGTGGAAGGTC CGACAGCGCGCCCAGATCCAGCCACGCCACCGGTCCGCCTCTCCCGCCGCCCTGGCCTGT CCTTAG >chr8_random_5|SGP_v1.0_predicted_protein_5|422_AA MACKTTATTSSKRIVRRASLPSLSLKKPIILRSSGCQVPTVLRRGYLQLFTEECLKFCAS KQEAEEKALNEEKVAYDCSPNKNRYLNVVLNTLKRLKGLTPSSMPGLSRAALYSHLQEFL LTQDQLKENGYPFPHPERPGGAVLFTGQGKGPGDSSCRVCCRCGTEYLVSSSGRCVRDQL CYYHWGRVRSSQVAGGRVSQYTCCAAAPGSVGCQVAKQHVRDGRKESLDGFVETFKKELS RDAYPGIYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEA DVAKTSITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTAVLFPHYLGFPY KRSLRNLAADYLAQIIQDSQDGHNSSEDASACLQLVMWKVRQRAQIQPRHRSASPAALAC P* # Gene 6 (Forward). 3 exons. 122 aa. Score = 6.56 First 848451 848454 -7.87 + 0 1 0.12 2.12 0.00 -1.40 AA 1: 2 chr8_random_6 Internal 859264 859451 5.97 + 2 0 4.66 2.60 14.21 -65.80 AA 2: 64 chr8_random_6 Internal 864958 865132 8.46 + 0 1 1.45 5.21 16.05 -61.25 AA 65:122 chr8_random_6 >chr8_random_6|SGP_v1.0_predicted_cDNA_6|367_NN ATGGGGCTGGTGAATTACCAGATCTCCGTCAAGTGCAGTAACCAGTTCAAGTTGGAAGTG TGTCTTTTGAATGCAGAAAACAAAGTCGTGGACAACCAGGCTGGGACCCAGGGCCAGCTG AAGGTGCTGGGTGCCAACCTCTGGTGGCCGTACCTGATGCACGAACACCCCGCCTCCCTG TACTCGTGGGAGGCTCTGTATGTGGATGTGATCCGTGTGAACAGCTACTACTCTTGGTAT CGCAACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAATTGG TGTAAGACATCACAATCCCATTATTCAGAGCGCGTATGGAGTGGAAACGCTTGTAAGGCT TCACCAG >chr8_random_6|SGP_v1.0_predicted_protein_6|122_AA MGLVNYQISVKCSNQFKLEVCLLNAENKVVDNQAGTQGQLKVLGANLWWPYLMHEHPASL YSWEALYVDVIRVNSYYSWYRNYGHLELIQLQLAAQFENWCKTSQSHYSERVWSGNACKA SPag