## date Fri Sep 21 17:34:58 2007
## source-version: geneid v 1.2 -- geneid@imim.es
# Sequence chr3_random - Length = 749256 bps
# Optimal Gene Structure. 5 genes. Score = 71.06 
# Gene 1 (Forward). 7 exons. 229 aa. Score = 5.92 
Internal     2896     3046	 3.98	+ 1 0	 3.62	 3.19	11.83	-52.85	AA   1: 51 chr3_random_1
Internal    26480    26568	-2.03	+ 0 2	 3.77	 1.82	 5.78	-31.15	AA  52: 81 chr3_random_1
Internal    30937    31042	 6.29	+ 1 0	 6.16	 2.10	 9.72	-37.10	AA  81:116 chr3_random_1
Internal    55103    55202	-2.07	+ 0 1	 3.06	 1.31	 7.64	-35.00	AA 117:150 chr3_random_1
Internal    57026    57150	 2.52	+ 2 0	 3.03	 2.41	11.01	-43.75	AA 150:191 chr3_random_1
Internal    59776    59880	 2.08	+ 0 0	 5.46	 2.30	 7.16	-36.75	AA 192:226 chr3_random_1
Terminal    76561    76569	-4.84	+ 0 0	 4.90	 0.00	 0.46	-2.10	AA 227:229 chr3_random_1

>chr3_random_1|SGP_v1.0_predicted_cDNA_1|685_NN
GGATTATGATCAAGAACAGTTTGCTGATAACCAAATACCACTGTTGGTAATAGGGACTAA
ACTGGACCAGATTCATGAAACAAAGCGCCATGAAGTTTTAACTAGGACTGCTTTCCTGGC
TGAGGATTTCAATCCAGAAGAAATTAATTTGAATAATCCTCAGGTCTGCCCCTACAATCT
CTATGCTGAGCAGCTCTCAGGATCGGCTTTCACTTGTCCACGGAGCACCAATAAGAGAAG
CTGGCTGTATAGGATTCTACCTTCAGTTTCTCACAAGCCCTTTGAATCCATTGACGAAGG
CCAAGTCACTCACAACTGGGATGAAGTTGATCCTGATCCTAACCAGAGAGGAATGCGGTT
CAGCATAGATGTCTTTGAGGAGACCAGGGGCTACATCTTGGAGGTCTATGGTGTCCACTT
TGAGTTACCTGACCTTGGACCAATTGGGGCCAATGGCTTGGCCAATCCTCGTGATTTCTT
GATACCCATTGCCTGGTATGAGGATCGCCAAGTACCAGGTGGTTACACGGTCATTAATAA
ATACCAGGGCAAGCTGTTTGCTGCCAAACAGGATGTCTCCCCGTTCAATGTTGTGGCCTG
GCACGGGAATTATACACCCTACAAGTACAACCTGAAGAATTTCATGGTTATCAACTCAGT
GGCCTTTGACCATGCAATCAGCTAG

>chr3_random_1|SGP_v1.0_predicted_protein_1|229_AA
gDYDQEQFADNQIPLLVIGTKLDQIHETKRHEVLTRTAFLAEDFNPEEINLNNPQVCPYN
LYAEQLSGSAFTCPRSTNKRSWLYRILPSVSHKPFESIDEGQVTHNWDEVDPDPNQRGMR
FSIDVFEETRGYILEVYGVHFELPDLGPIGANGLANPRDFLIPIAWYEDRQVPGGYTVIN
KYQGKLFAAKQDVSPFNVVAWHGNYTPYKYNLKNFMVINSVAFDHAIS*

# Gene 2 (Reverse). 2 exons. 81 aa. Score = 9.53 
Terminal    99268    99330	-0.05	- 0 0	 0.00	 6.95	 4.31	-21.00	AA  61: 81 chr3_random_2
   First   104999   105178	 9.58	- 0 0	 2.07	 2.99	18.16	-63.00	AA   1: 60 chr3_random_2

>chr3_random_2|SGP_v1.0_predicted_cDNA_2|243_NN
ATGTCGTTCCCAAAGTATAAGCCGTCGAGCCTGCGCACTCTGCCTGAGACCCTCGACCCA
GCCGAATACAACATATCTCCGGAAACCCGGCGGGCGCAAGCCGAGCGGTTGGCCATAAGA
GCCCAGCTGAAACGAGAGTACCTGCTTCAGTACAACGATCCCAACCGCCGAGGGCTCATC
GATAGGAAAGAAAAACTTATCCAGGAAGGAAAATTGGATCGAACATTTCACCTCTCATAT
TAA

>chr3_random_2|SGP_v1.0_predicted_protein_2|81_AA
MSFPKYKPSSLRTLPETLDPAEYNISPETRRAQAERLAIRAQLKREYLLQYNDPNRRGLI
DRKEKLIQEGKLDRTFHLSY*

# Gene 3 (Forward). 2 exons. 394 aa. Score = 18.55 
   First   650156   650203	 1.86	+ 0 0	 2.60	 4.21	 4.55	-16.80	AA   1: 16 chr3_random_3
Terminal   652243   653376	16.68	+ 0 0	 5.32	 0.00	69.92	-395.85	AA  17:394 chr3_random_3

>chr3_random_3|SGP_v1.0_predicted_cDNA_3|1182_NN
ATGGCTGTGACTGAAGCACAGGATTTGGGATTGGAGAAGGGACTGGAGAACAGAGAAAGT
GGATTGAACAAGGACGCATTTCCCCAGTACATCCACAACATGCTGTCCACATCTCGTTCT
CGGTTTATCAGAAATACCAACGAGAGCGGTGAAGAAGTCACCACCTTTTTTGATTATGAT
TACGGTGCTCCCTGTCATAAATTTGACGTGAAGCAAATTGGGGCCCAACTCCTGCCTCCG
CTCTACTCGCTGGTGTTCATCTTTGGTTTTGTGGGCAACATGCTGGTCGTCCTCATCTTA
ATAAACTGCAAAAAGCTGAAGTGCTTGACTGACATTTACCTGCTCAACCTGGCCATCTCT
GATCTGCTTTTTCTTATTACTCTCCCATTGTGGGCTCACTCTGCTGCAAATGAGTGGGTC
TTTGGGAATGCAATGTGCAAATTATTCACAGGGCTGTATCACATCGGTTATTTTGGCGGA
ATCTTCTTCATCATCCTCCTGACAATCGATAGATACCTGGCTATTGTCCATGCTGTGTTT
GCTTTAAAAGCCAGGACGGTCACCTTTGGGGTGGTGACAAGTGTGATCACCTGGTTGGTG
GCTGTGTTTGCTTCTGTCCCAGGAATCATCTTTACTAAATGCCAGAAAGAAGATTCTGTT
TATGTCTGTGGCCCTTATTTTCCACGAGGATGGAATAATTTCCACACAATAATGAGGAAC
ATTTTGGGGCTGGTCCTGCCGCTGCTCATCATGGTCATCTGCTACTCGGGAATCCTGAAA
ACCCTGCTTCGGTGTCGAAACGAGAAGAAGAGGCATAGGGCAGTGAGAGTCATCTTCACC
ATCATGATTGTTTACTTTCTCTTCTGGACTCCCTATAACATTGTCATTCTCCTGAACACC
TTCCAGGAATTCTTCGGCCTGAGTAACTGTGAAAGCACCAGTCAACTGGACCAAGCCACG
CAGGTGACAGAGACTCTTGGGATGACTCACTGCTGCATCAATCCCATCATCTATGCCTTC
GTTGGGGAGAAGTTCAGAAGGTATCTCTCGGTGTTCTTCCGAAAGCACATCACCAAGCGC
TTCTGCAAACAATGTCCAGTTTTCTACAGGGAGACAGTGGATGGAGTGACTTCAACAAAC
ACGCCTTCCACTGGGGAGCAGGAAGTCTCGGCTGGTTTATAA

>chr3_random_3|SGP_v1.0_predicted_protein_3|394_AA
MAVTEAQDLGLEKGLENRESGLNKDAFPQYIHNMLSTSRSRFIRNTNESGEEVTTFFDYD
YGAPCHKFDVKQIGAQLLPPLYSLVFIFGFVGNMLVVLILINCKKLKCLTDIYLLNLAIS
DLLFLITLPLWAHSAANEWVFGNAMCKLFTGLYHIGYFGGIFFIILLTIDRYLAIVHAVF
ALKARTVTFGVVTSVITWLVAVFASVPGIIFTKCQKEDSVYVCGPYFPRGWNNFHTIMRN
ILGLVLPLLIMVICYSGILKTLLRCRNEKKRHRAVRVIFTIMIVYFLFWTPYNIVILLNT
FQEFFGLSNCESTSQLDQATQVTETLGMTHCCINPIIYAFVGEKFRRYLSVFFRKHITKR
FCKQCPVFYRETVDGVTSTNTPSTGEQEVSAGL*

# Gene 4 (Reverse). 1 exons. 95 aa. Score = 9.98 
  Single   667782   668066	 9.98	- 0 0	 0.00	 5.00	24.56	-98.70	AA   1: 95 chr3_random_4

>chr3_random_4|SGP_v1.0_predicted_cDNA_4|285_NN
ATGGACGACAGCCAGGTACCTATCGATTGTCAGGAGGATGATGAAGAAGATTCCAGAGAA
GAAGCCTATAAAATAGAGCCCTGTCAAGAGTTGACACATTGTATTTCCAAAGTCCCACTG
GGCGGCAGCATAGTGAGCCCAGAAGGGGACAGTAAGAAGGAAAAACAGGTCAGAGATGGC
CAGGTTGAGCAGGTAGATGTCAGTCATGCTCTTCAGCCTTTTGCAGTTTATCAGGATGAG
GATGACCAGCATGTTGCCCACAAAACCAAAGATGAACACCAGTGA

>chr3_random_4|SGP_v1.0_predicted_protein_4|95_AA
MDDSQVPIDCQEDDEEDSREEAYKIEPCQELTHCISKVPLGGSIVSPEGDSKKEKQVRDG
QVEQVDVSHALQPFAVYQDEDDQHVAHKTKDEHQ*

# Gene 5 (Reverse). 9 exons. 439 aa. Score = 27.09 
Terminal   703508   703777	-1.79	- 0 0	 0.00	 0.55	20.17	-93.45	AA 350:439 chr3_random_5
Internal   734072   734256	 6.26	- 2 0	 2.74	 6.35	12.25	-64.75	AA 288:349 chr3_random_5
Internal   736194   736261	-1.20	- 1 1	 2.63	 2.67	 5.69	-23.80	AA 265:288 chr3_random_5
Internal   738211   738352	 5.26	- 2 2	 3.67	 5.50	 9.36	-49.70	AA 218:265 chr3_random_5
Internal   741210   741263	 0.61	- 2 1	 4.42	 4.48	 1.98	-18.90	AA 200:218 chr3_random_5
Internal   742078   742168	-0.83	- 0 1	 2.67	 3.14	 6.14	-31.85	AA 170:200 chr3_random_5
Internal   743633   743787	 7.62	- 2 0	 1.13	 4.26	15.51	-54.25	AA 118:169 chr3_random_5
Internal   744624   744798	 5.20	- 0 1	 2.57	 4.02	13.40	-61.25	AA  60:118 chr3_random_5
Internal   745265   745443	 5.95	- 2 0	 0.82	 3.59	16.90	-62.65	AA   1: 59 chr3_random_5

>chr3_random_5|SGP_v1.0_predicted_cDNA_5|1319_NN
AGGACCTGTCAGACGAGGCTGAAAGGGACGAGTATGAGTTACTCTGCCCAGACAACACTC
GGAAGCCAGTGGACAAGTTCAAAGACTGCCATCTGGCCCGGGTCCCTTCTCATGCCGTTG
TGGCACGAAGTGTGAATGGCAAGGAGGATGCCATCTGGAATCTTCTCCGCCAGGCACAGG
AAAAGTTTGGAAAGGACAAGTCACCGAAATTCCAGCTCTTTGGCTCCCCTAGTGGGCAGA
AAGATCTGCTGTTCAAGGACTCTGCCATTGGGTTTTCGAGGGTGCCCCCGAGGATAGATT
CTGGGCTGTACCTTGGCTCCGGCTACTTCACTGCCATCCAGAACTTGAGGAAAAGTGAGG
AGGAAGTGGCTGCCCGGCGTGCGCGGGTCGTGTGGTGTGCGGTGGGCGAGCAGGAGCTGC
GCAAGTGTAACCAGTGGAGTGGCTTGAGCGAAGGCAGCGTGACCTGCTCCTCGGCCTCCA
CCACAGAGGACTGCATCGCCCTGGTGCTGAAAGGAGAAGCTGATGCCATGAGTTTGGATG
GAGGATATGTGTACACTGCAGGCAAATGTGGTTTGGTGCCTGTCCTGGCAGAGAACTACA
AATCCCAACAAAGCAGTGACCCTGATCCTAACTGTGTGGATAGACCTGTGGAAGATGAAT
ATTTCAGTCAAAGCTGTGCCCCTGGGTCTGACCCGAGATCTAATCTCTGTGCTCTGTGTA
TTGGCGACGAGCAGGGTGAGAATAAGTGCGTGCCCAACAGCAACGAGAGATACTACGGCT
ACACTGGGGCTTTCCGGTGCCTGGCTGAGAATGCTGGAGACGTTGCATTTGTGAAAGATG
TCACTGTCTTGCAGAACACTGATGGAAATAACAATGACGCATGGGCTAAGGATTTGAAGC
TGGCAGACTTTGCGCTGCTGTGCCTCGATGGCAAACGGAAGCCTGTGACTGAGGCTAGAA
GCTGCCATCTTGCCATGGCCCCGAATCATGCCGTGGTGTCTCGGATGGATAAGGTGGAAC
GCCTGAAACAGGTGTTGCTCCACCAACAGATGGAAACAGCGGCAGAGGTATTTGCTAAAT
GTCCCATCAAGAAACGCATACAGGAGAGGGTTGATGCAGCAGTGGGTGGTGGCGATGAGT
TTAGTGATGTGAACACTTTTGTCCAGATTGTAGCTGCTCTTGCAGTCACTCAGGGAGAAG
TGTTCTTTGAAAGTGGACAGGAAAAATGCAATATTGTAGGGCGCCCACATCAGAAGGAAG
ACTACCATTATGGCAAAAACAAGCTTGAAAAGGCTATACCTCTGCTCCCTGAACCTTAG

>chr3_random_5|SGP_v1.0_predicted_protein_5|439_AA
agDLSDEAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARSVNGKEDAIWNLLRQA
QEKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVPPRIDSGLYLGSGYFTAIQNLRKS
EEEVAARRARVVWCAVGEQELRKCNQWSGLSEGSVTCSSASTTEDCIALVLKGEADAMSL
DGGYVYTAGKCGLVPVLAENYKSQQSSDPDPNCVDRPVEDEYFSQSCAPGSDPRSNLCAL
CIGDEQGENKCVPNSNERYYGYTGAFRCLAENAGDVAFVKDVTVLQNTDGNNNDAWAKDL
KLADFALLCLDGKRKPVTEARSCHLAMAPNHAVVSRMDKVERLKQVLLHQQMETAAEVFA
KCPIKKRIQERVDAAVGGGDEFSDVNTFVQIVAALAVTQGEVFFESGQEKCNIVGRPHQK
EDYHYGKNKLEKAIPLLPEP*