## date Fri Sep 21 17:34:57 2007 ## source-version: geneid v 1.2 -- geneid@imim.es # Sequence chr2_random - Length = 185571 bps # Optimal Gene Structure. 4 genes. Score = 272.04 # Gene 1 (Reverse). 7 exons. 893 aa. Score = 61.31 Internal 7320 8440 13.51 - 1 1 -1.60 -1.68 76.26 -392.35 AA 519:893 chr2_random_1 Internal 19026 19060 -6.17 - 0 2 1.15 5.25 -1.49 -12.25 AA 508:519 chr2_random_1 Internal 19107 19210 13.00 - 2 0 3.58 4.29 14.23 -36.40 AA 473:507 chr2_random_1 Internal 20181 20290 14.92 - 1 1 3.99 2.84 17.07 -38.50 AA 436:473 chr2_random_1 Internal 23525 23684 -3.80 - 2 2 2.01 3.51 7.64 -56.00 AA 383:436 chr2_random_1 Internal 50127 51196 23.30 - 1 1 2.59 2.01 72.59 -374.50 AA 26:383 chr2_random_1 First 54151 54227 6.54 - 0 2 2.10 4.23 9.17 -26.95 AA 1: 26 chr2_random_1 >chr2_random_1|SGP_v1.0_predicted_cDNA_1|2677_NN ATGGTGATCTGCTGTGCGGCCGTGAACTGCTCCAACCGGCAGGGAAAGGGCGAGAAGCGC GCCGTCTCCTTCCACAGTGAGCATTTCACCAAAGACAGCTTCTCCAAGAGGCTGGAGGAC CAGCATCGCCTGCTGAAGCCCACGGCCGTGCCATCCATCTTCCACCTGACCGAGAAGAAG AGGGGGGCTGGAGGCCATGGCCGCACCCGGAGAAAAGATGCCAGCAAGGCCACAGGGGGT GTGAGGGGACACTCGAGTGCCGCCACCAGCAGAGGAGCTGCAGGTTGGTCACCGTCCTCG AGTGGAAACCCGATGGCCAAGCCAGAGTCCCGCAGGTTGAAGCAAGCTGCTCTGCAAGGT GAAGCCACACCCAGGGCGGCCCAGGAGGCCGCCAGCCAGGAGCAGGCCCAGCAAGCTCTG GAACGGACTCCAGGAGATGGACTGGCCACCATGGTGGCAGGCAGTCAGGGAAAAGCAGAA GCGTCTGCCACAGATGCTGGCGATGAGAGCGCCACTTCCTCCATCGAAGGGGGCGTGACA GATAAGAGTGGCATTTCTATGGATGACTTTACGCCCCCAGGATCTGGGGCGTGCAAATTT ATCGGCTCACTTCATTCGTACAGTTTCTCCTCTAAGCACACCCGAGAAAGGCCATCTGTC CCCCGAGAGCCCATTGACCGCAAGAGGCTGAAGAAAGATGTGGAACCAAGCTGCAGTGGG AGCAGCCTGGGACCCGACAAGGGCCTGGCCCAGAGCCCTCCCAGCTCATCACTTACCGCG ACACCGCAGAAGCCTTCCCAGAGCCCCTCTGCCCCTCCTGCCGACGTCACCCCAAAGCCA GCCACGGAAGCCGTGCAGAGCGAGCACAGCGACGCCAGCCCCATGTCCATCAACGAGGTC ATCCTGTCGGCGTCAGGGGCCTGCAAGCTCATCGACTCACTGCACTCCTACTGCTTCTCC TCCCGGCAGAACAAGAGCCAGGTGTGCTGCCTGCGGGAGCAGGTGGAGAAGAAGAACGGC GAGCTGAAGAGCCTGCGGCAGAGGGTCAGCCGCTCCGACAGCCAGGTGCGGAAGCTACAG GAGAAGCTGGATGAGCTGAGGAGAGTGAGCGTCCCCTATCCAAGTAGCCTGCTGTCGCCC AGCCGCGAGCCCCCCAAGATGAACCCAGTGGTGGAGCCACTGTCCTGGATGCTGGGCACC TGGCTGTCGGACCCACCTGGAGCCGGGACCTACCCCACACTGCAGCCCTTCCAGTACCTG GAGGAGGTTCACATCTCCCACGTGGGCCAGCCCATGCTGAACTTCTCGTTCAACTCCTTC CACCCGGACACGCGCAAGCCGATGCACAGAGAGTGTGGCTTCATTCGCCTCAAGCCCGAC ACCAACAAGGTGGCCTTTGTCAGCGCCCAGAACACAGGCGTGGTGGAAGTGGAGGAGGGC GAGGTGAACGGGCAGGAGCTGTGCATCGCATCCCACTCCATCGCCAGGATCTCCTTCGCC AAGGAGCCCCACGTAGAGCAGCGGTCTGTGGAGTCAGCCTCTTCCTCTTCCGTGAGCCGA GCAGTTCTGAGTGTCCTAGTGCCCATCATCATCAGCCGAGCAGCTCTGAGTGTCCTAGTG CCCATCATCGTCAGCCGGGCAGTTCTGAGTGTCCTAGTGCCCATCATCGTCAGCCTGGCA GTTCTGTCTGTCCTAGTGCCCATCATCATCAGCCGAGCAGCTCTGAGTGTCCTAGTGCCC ATCATCGTCAGCCGGGCAGTTCTGTGTGTCCTAGTGCCCATTATTGTCAGCCGAGCAGCT CTGAGTGTCCTAGTGCCCATCATCGTCAGCCGAGCAGCTCTGTGTGTCCTAGTGCCCATC ATCGTCAGCCGGGCAGTTCTGTGTGTCCTAGTGCCCATCATCGTCAGCCGGGCAGTTCTG TGTGTCCTAGTGCCCATTATCGTCAGCCGGGCAGCTCTGCGTGTCCTAGTGCCCATTATC ATCAGCCGAGCAGCTCTGAGTGTCCTAGTGCCCCTCATCATCAGCCGGGCAGTTCTGAGT GTCCTAGTGCCCATGATCATCAGCCAAGCAGTTCTGTGTGTCCTAGTGCCCATCATCATC AGCCGAGCAGCTCTGAGTGTCCTAGTGCCCATCATCGTCAGCCGGGCAGCTCTGCGTGTC CTAGTGCCCATCATCATCAGCCGAGCAGCTCTGAGTGTCCTAGTGCCCCTCATCATCAGC CGGGCAGTTCTGAGTGTCCTAGTGCCCATCATCAGCCGAGCAGCTCTGTGTGTCCTAGTG CCCATTATCATCAGCCGAGCAGCTCTGAGTGTCCTAGTGCCCATTATCATCAGCCGAGCA GCTCTGCGTGTCCTAGTGCCCATTATCATCAGCCGAGCAGCTCTGAGTGTCCTAGTGCCC CTCATCATCAGCCGGGCAGTTCTGAGTGTCCTAGTGCCCATCATCATCAGCCGGGCAGCT CTGAGTGTCCTAGTGCCCCTCATCATCAGCCGGGCAGCTCTGAGTGTCCTAGTGCCCATT ATCATCAGCCGAGCAGCTCTGAGTGTCCTAGTGCCCATTATCATCAGCCGAGCAGCTCTG TGTGTCCTAGTGCCCATTATCATCAGCCGGGCAGCTGAGTGTCCTAGTGCCCATTATCAT CAGCCGAGCAGCTCTGAGTGTCCTAGTGCCCATCATC >chr2_random_1|SGP_v1.0_predicted_protein_1|893_AA MVICCAAVNCSNRQGKGEKRAVSFHSEHFTKDSFSKRLEDQHRLLKPTAVPSIFHLTEKK RGAGGHGRTRRKDASKATGGVRGHSSAATSRGAAGWSPSSSGNPMAKPESRRLKQAALQG EATPRAAQEAASQEQAQQALERTPGDGLATMVAGSQGKAEASATDAGDESATSSIEGGVT DKSGISMDDFTPPGSGACKFIGSLHSYSFSSKHTRERPSVPREPIDRKRLKKDVEPSCSG SSLGPDKGLAQSPPSSSLTATPQKPSQSPSAPPADVTPKPATEAVQSEHSDASPMSINEV ILSASGACKLIDSLHSYCFSSRQNKSQVCCLREQVEKKNGELKSLRQRVSRSDSQVRKLQ EKLDELRRVSVPYPSSLLSPSREPPKMNPVVEPLSWMLGTWLSDPPGAGTYPTLQPFQYL EEVHISHVGQPMLNFSFNSFHPDTRKPMHRECGFIRLKPDTNKVAFVSAQNTGVVEVEEG EVNGQELCIASHSIARISFAKEPHVEQRSVESASSSSVSRAVLSVLVPIIISRAALSVLV PIIVSRAVLSVLVPIIVSLAVLSVLVPIIISRAALSVLVPIIVSRAVLCVLVPIIVSRAA LSVLVPIIVSRAALCVLVPIIVSRAVLCVLVPIIVSRAVLCVLVPIIVSRAALRVLVPII ISRAALSVLVPLIISRAVLSVLVPMIISQAVLCVLVPIIISRAALSVLVPIIVSRAALRV LVPIIISRAALSVLVPLIISRAVLSVLVPIISRAALCVLVPIIISRAALSVLVPIIISRA ALRVLVPIIISRAALSVLVPLIISRAVLSVLVPIIISRAALSVLVPLIISRAALSVLVPI IISRAALSVLVPIIISRAALCVLVPIIISRAAECPSAHYHQPSSSECPSAHHc # Gene 2 (Forward). 10 exons. 285 aa. Score = 46.69 First 54925 54934 3.05 + 0 1 4.21 3.65 1.67 -3.50 AA 1: 4 chr2_random_2 Internal 71757 71858 0.55 + 2 1 4.47 1.12 7.93 -35.70 AA 4: 38 chr2_random_2 Internal 72482 72554 1.75 + 2 2 4.84 2.05 5.59 -25.55 AA 38: 62 chr2_random_2 Internal 76319 76398 5.57 + 1 1 3.86 3.26 8.83 -28.00 AA 62: 89 chr2_random_2 Internal 83910 84049 6.40 + 2 0 1.71 2.35 15.36 -49.00 AA 89:135 chr2_random_2 Internal 85354 85432 12.27 + 0 1 2.28 3.45 14.84 -27.65 AA 136:162 chr2_random_2 Internal 85751 85896 18.82 + 2 0 4.16 3.46 20.78 -51.10 AA 162:210 chr2_random_2 Internal 87937 87993 1.14 + 0 0 3.84 1.33 6.27 -19.95 AA 211:229 chr2_random_2 Internal 88523 88616 -4.16 + 0 1 1.45 3.31 4.65 -32.90 AA 230:261 chr2_random_2 Terminal 89402 89475 1.31 + 2 0 5.22 0.00 7.02 -24.85 AA 261:285 chr2_random_2 >chr2_random_2|SGP_v1.0_predicted_cDNA_2|855_NN ATGGACGCAGATTGGAGGTGGACACAAAGGAAGAGGCAGCCAGACAGCTACTTCAGCGTC CTCAACGCATTCATCGACAGGAAGGACAGTTACTACTCCATTCACCAGATAGCGCAAATG GGAGTTGGCGAAGGCAAGTCCATAGGCCAGTGGTACGGGCCCAACACTGTCGCCCAGGTC CTGAAGAAGCTTGCTGTCTTCGATACGTGGAGCTCCTTGGCGGTCCACATTGCAATGGAC AACACTGTTGTGATGGAGGAAATCAATTCCGACCGGCACTGCAACGGATTCCCTGCCGGA GCTGAGGTCACCAACAGGCCGTCGCCATGGAGACCCCTGGTACTTCTCATTCCCCTGCGC CTGGGGCTCACGGACATCAACGAGGCCTACGTGGAGACGCTGAAGCACTGCTTCATGATG CCCCAGTCCCTGGGCGTCATCGGAGGGAAGCCCAACAGCGCCCACTACTTCATCGGCTAC GTTGGTGAGGAGCTCATCTACCTGGACCCCCACACCACGCAGCCAGCCGTGGAGCCCACT GATGGCTGCTTCATCCCGGACGAGAGCTTCCACTGCCAGCACCCGCCGTGCCGCATGAGC ATCGCGGAGCTTGACCCGTCCATCGCTGTGGGGTTTTTCTGTAAGACTGAAGATGACTTC AATGATTGGTGCCAGCAAGTCAAAAAGCTGTCTCTGCTTGGAGGTGCCCTGCCCATGTTT GAGCTGGTGGAGCTGCAGCCTTCACATCTGGCCTGCCCCGACGTCCTGAACCTGTCCCTA GATTCTTCTGATGTAGAGCGACTGGAAAGATTCTTCGACTCAGAAGATGAAGACTTTGAA ATCCTGTCCCTTTGA >chr2_random_2|SGP_v1.0_predicted_protein_2|285_AA MDADWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQV LKKLAVFDTWSSLAVHIAMDNTVVMEEINSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLR LGLTDINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPT DGCFIPDESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMF ELVELQPSHLACPDVLNLSLDSSDVERLERFFDSEDEDFEILSL* # Gene 3 (Reverse). 4 exons. 146 aa. Score = 29.18 Terminal 93338 93448 1.87 - 0 0 0.00 -1.44 16.59 -37.80 AA 110:146 chr2_random_3 Internal 95663 95788 12.10 - 0 0 3.93 3.31 15.33 -44.10 AA 68:109 chr2_random_3 Internal 103018 103088 0.99 - 2 0 -0.05 6.28 6.03 -24.85 AA 44: 67 chr2_random_3 First 103865 103994 14.22 - 0 1 1.46 4.51 17.75 -45.50 AA 1: 44 chr2_random_3 >chr2_random_3|SGP_v1.0_predicted_cDNA_3|438_NN ATGGCGGCCCGGCGCGGGGCTCTCATAGTGCTGGAGGGCGTGGACCGCGCCGGGAAGAGC ACGCAGAGCCGCAAGCTGGTGGAAGCGCTGTGCGCCGCGGGCCACCGCGCCGAACTGCTC CGGTTCCCGGAAAGATCAACTGAAATCGGCAAACTTCTGAGTTCCTACTTGCAAAAGAAA AGTGACGTGGAGGATCACTCGTTACAGCTGGCGGATGCTGCCAAGCGGGGAGCGTTTGGC CATGAGCGCTATGAGAACGGGGCTTTCCAGGAGCGGGCGCTCCGGTGTTTCCACCAGCTC ATGAAAGACACGACTTTGAACTGGAAGATGGTGGATGCTTCCAAAAGCATCGAAGCTGTC CATGAGGACATCCGCGTGCTCTCTGAGGACGCCATCCGCACTGCCACAGAGAAGCCGCTG GGGGAGCTATGGAAGTGA >chr2_random_3|SGP_v1.0_predicted_protein_3|146_AA MAARRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKK SDVEDHSLQLADAAKRGAFGHERYENGAFQERALRCFHQLMKDTTLNWKMVDASKSIEAV HEDIRVLSEDAIRTATEKPLGELWK* # Gene 4 (Forward). 13 exons. 606 aa. Score = 134.87 First 118604 118640 5.01 + 0 1 5.78 -0.06 6.79 -12.95 AA 1: 13 chr2_random_4 Internal 121191 121262 3.85 + 2 1 4.94 2.23 7.13 -25.20 AA 13: 37 chr2_random_4 Internal 125754 125920 28.08 + 2 0 3.72 2.21 30.79 -58.45 AA 37: 92 chr2_random_4 Internal 127915 127990 -1.45 + 0 1 3.28 -1.83 9.77 -26.60 AA 93:118 chr2_random_4 Internal 128516 128609 0.97 + 2 2 2.65 2.73 8.45 -32.90 AA 118:149 chr2_random_4 Internal 139474 139609 12.18 + 1 0 5.56 2.93 14.49 -47.60 AA 149:194 chr2_random_4 Internal 151902 152065 10.29 + 0 2 -3.60 3.10 24.41 -57.40 AA 195:249 chr2_random_4 Internal 158994 159133 12.11 + 1 1 4.23 2.63 16.44 -49.00 AA 249:296 chr2_random_4 Internal 160181 160374 3.14 + 2 0 1.21 2.05 16.50 -67.90 AA 296:360 chr2_random_4 Internal 161268 161436 10.00 + 0 1 3.33 1.66 18.36 -59.15 AA 361:417 chr2_random_4 Internal 167805 167947 10.76 + 2 0 3.33 0.05 19.45 -50.05 AA 417:464 chr2_random_4 Internal 172408 172573 18.17 + 0 1 4.56 1.16 23.39 -58.10 AA 465:520 chr2_random_4 Terminal 182623 182882 21.75 + 2 0 4.83 0.00 31.39 -89.95 AA 520:606 chr2_random_4 >chr2_random_4|SGP_v1.0_predicted_cDNA_4|1818_NN ATGGCGACCGCCATGTACTTGGAGCACTATCTGGACAGTATCGAGAACCTTCCCTGCGAA CTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAGGACGGAAGATAAGAAAGCA GAGATTGACATCCTGGCTGCAGAGTACATCTCCACGGTGAAGACGCTGTCTCCAGACCAG CGCGTGGAGCGCCTGCAGAAGATCCAGAACGCCTACAGCAAGTGCAAGGAATACAGTGAC GACAAAGTGCAGCTGGCCATGCAGACCTACGAGATGGTGGATAAACACATTCGAAGGCTT GATGCAGACCTGGCGCGCTTTGAAGCAGATCTGAAGGACAAGATGGAGGGCAAAGGCCGG GGTCAGAAAGAAAAAAGAGGGTCCCGGGGCCGAGGCAGGAGGACATCAGAGGAAGACACA CCAAAGAAAAAGAAGCACAAAGGAGGGTCTGAGTTCACTGACACCATCCTGTCCGTGCAC CCCTCTGATGTGCTGGACATGCCCGTGGACCCAAACGAACCCACGTACTGCCTGTGCCAC CAGGTCTCCTATGGGGAGATGATTGGCTGTGACAATCCAGACGTGCCGCTGACCCGGGAG CGCTACCCCGTGCAGCGCTTGCCGTTCTCCACGGTGTCTAAGCAGGACCTGGCCGCCTTT GAGCGCATCGTGCCCGGCGGGGTCGTCACGGACCCGGAAGCGCTGCAGGCTCCCAACGTG GACTGGTTGCGGACGCTGCGAGGTGGGCACTGCCACGAGAGGAACCTGGCCGTGAACCCA CAGGGGGGCAACACAGGCATGGTGGGTGGCAGCGTCCCCGTCTTTGACGAGATCATCCTC TCCACTGCCCGCATGAACCGGGTCCTCAGCTTCCACAGCGTGTCTGGAATTCTGGTTTGC CAGGCGGGCTGCGTCCTGGAGGAGCTGAGCCGGTATGTGGAGGAACGGGACTTCATCATG CCGCTGGACTTAGGAGCCAAGGGCAGCTGCCACATCGGGGGAAACGTGGCAACCAACGCT GGAGGCCTGCGGTTTCTTCGATATGGCTCACTGCATGGGACTGTCCTGGGCCTGGAAGTG GTGCTGGCCGACGGCACTGTCCTGGACTGCCTGACCTCCCTGAGGAAGGACAACACGGGC TATGACCTGAAGCAGCTGTTCATCGGGTCGGAGGGCACTTTGGGGATCATCACCACGGTG TCCATCTTGTGTCCACCCAAGCCCAGGGCTGTGAACGTGGCTTTCCTCGAGAGTCCGTTT TACGTCCTCATCGAGACTTCAGGCTCCAACGCAGGCCATGACGCTGAGAAGCTGGGCCAC TTCCTGGAGCACGCGCTGGGCTCCGGCCTGGTGACCGATGGGACCATGGCCACCGACCAG AGGAAAGTCAAGATGCTGTGGGCCCTGAGGGAAAGGATCACAGAGGCGCTGAGCCGGGAT GGCTACGTGTACAAGTACGACCTCTCCCTCCCTGTGGAGCGGCTCTACGACATCGTGACT GACCTGCGCGCCCGCCTCGGCCCGCACGCCAAGCACGTGGTGGGCTATGGCCACCTTGGA GATGGTAACCTGCACCTCAATGTGACGGCGGAGGCCTTCAGCCCCTCGCTCCTGGCTGCC CTGGAGCCCCACGTGTACGAGTGGACGGCCGGGCAGCAGGGCAGCGTCAGCGCGGAGCAC GGAGTGGGCTTCAGGAAGAGGGACGTCCTGGGCTACAGCAAGCCACCGGGGGCCCTGCAG CTCATGCAGCAGCTCAAGGCCCTGCTGGACCCCAAGGGCATCCTCAACCCCTACAAGACG CTGCCCAGCCAGGCCTGA >chr2_random_4|SGP_v1.0_predicted_protein_4|606_AA MATAMYLEHYLDSIENLPCELQRNFQLMRELDQRTEDKKAEIDILAAEYISTVKTLSPDQ RVERLQKIQNAYSKCKEYSDDKVQLAMQTYEMVDKHIRRLDADLARFEADLKDKMEGKGR GQKEKRGSRGRGRRTSEEDTPKKKKHKGGSEFTDTILSVHPSDVLDMPVDPNEPTYCLCH QVSYGEMIGCDNPDVPLTRERYPVQRLPFSTVSKQDLAAFERIVPGGVVTDPEALQAPNV DWLRTLRGGHCHERNLAVNPQGGNTGMVGGSVPVFDEIILSTARMNRVLSFHSVSGILVC QAGCVLEELSRYVEERDFIMPLDLGAKGSCHIGGNVATNAGGLRFLRYGSLHGTVLGLEV VLADGTVLDCLTSLRKDNTGYDLKQLFIGSEGTLGIITTVSILCPPKPRAVNVAFLESPF YVLIETSGSNAGHDAEKLGHFLEHALGSGLVTDGTMATDQRKVKMLWALRERITEALSRD GYVYKYDLSLPVERLYDIVTDLRARLGPHAKHVVGYGHLGDGNLHLNVTAEAFSPSLLAA LEPHVYEWTAGQQGSVSAEHGVGFRKRDVLGYSKPPGALQLMQQLKALLDPKGILNPYKT LPSQA*