## date Fri Jun 9 11:12:06 2006 ## source-version: geneid v 1.2 -- geneid@imim.es # Sequence chr21_random - Length = 1679693 bps # Optimal Gene Structure. 14 genes. Score = 486.75 # Gene 1 (Reverse). 2 exons. 25 aa. Score = 4.22 Internal 5614 5633 0.16 - 1 1 2.97 6.34 -0.45 -7.00 AA 18: 25 chr21_random_1 First 9757 9809 4.06 - 0 2 1.03 5.28 6.58 -18.55 AA 1: 18 chr21_random_1 >chr21_random_1|SGP_v1.0_predicted_cDNA_1|73_NN ATGGCGGCGGCCACCTTGGTGGACGTGGGGAGAATTGGAATGGCAGGAGATGAGACTGCA GGGCTTCTTGGAG >chr21_random_1|SGP_v1.0_predicted_protein_1|25_AA MAAATLVDVGRIGMAGDETAGLLGg # Gene 2 (Forward). 2 exons. 60 aa. Score = 6.16 First 85419 85427 0.06 + 0 0 3.53 2.11 2.63 -3.15 AA 1: 3 chr21_random_2 Terminal 93742 93912 6.10 + 0 0 1.00 0.00 10.35 15.31 AA 4: 60 chr21_random_2 >chr21_random_2|SGP_v1.0_predicted_cDNA_2|180_NN ATGGCGGTGGTGCAGCACCAGTTTGAATTTGAATACCAGACCAAAGTGGATGGTGAGATA ATCCTTCATCTTTATGACAAAGGAGGAATTGAGCAAACAATTTGTACGTTGGTTGGTGTG TTTGCATTTGTTTTACTGGATTCTGCCAATAAGAAAGTGTCCCTGGACAGAGATACATAA >chr21_random_2|SGP_v1.0_predicted_protein_2|60_AA MAVVQHQFEFEYQTKVDGEIILHLYDKGGIEQTICTLVGVFAFVLLDSANKKVSLDRDT* # Gene 3 (Reverse). 5 exons. 369 aa. Score = 159.86 Terminal 103333 103578 42.00 - 0 0 0.00 1.83 35.85 8.35 AA 288:369 chr21_random_3 Internal 105133 105363 44.52 - 0 0 1.84 2.75 33.72 15.04 AA 211:287 chr21_random_3 Internal 106062 106167 17.74 - 1 0 0.44 0.65 19.08 7.55 AA 175:210 chr21_random_3 Internal 107898 108397 62.66 - 0 2 1.43 -0.76 55.66 -16.56 AA 9:175 chr21_random_3 First 122034 122057 -7.05 - 0 0 0.43 1.12 1.96 -8.40 AA 1: 8 chr21_random_3 >chr21_random_3|SGP_v1.0_predicted_cDNA_3|1107_NN ATGTGGCGTCAGCTGGCGGGCCTGCTGGAGGTGTGGTTCCAGAACTGCTATGCTCGCTAC CACCAGGCCTTCGCCGACTGCAACCAGTCAGAGCGGGAGCTGCAGGGGCACGAGAGCCAG CAGCTGGCCGCAGAGACCCAGACGCTGGCACAGCCGACACAGCAAGACTCCACGTGCAGG GTGGGCGAGCGACTGCAGGACACGCACAGCTGGAAGTCGGAGCTGCAGCGCGAGGTGAAG GTGCTGGCTGCGGAGACCGACCTGCTGCTGGCCCAGAAGCAACGGCTGGAGCGCGCCCTG GATGCCATGGAGGTGCCCTTCTCCATTGCCACTGACAACATGCAGTGCAGCCAGTGCCAC CAGCACGCCAACCTTGTGCGTGACCATGTGGAGACGGAGCTGCTGAAGGTGCCAGCAGCC TTGGGTGGCCAGGACTTGTGGGCACAGAGAGGAGGAGCCCCCGGCAGTTCATGTGGACAA GCCACGTGGCTGCTGCAAGCACACGGGAGACCAGCCCTCTATGCACTGAACAGAGAGCAC ACGGAGATCTGCGAGATGGACTGGTCGGACAAGGTGGAGGCCTACAACCTCGACGAGACT TTCGGGCGCCACCACAGCCAGAGCACCGAGCCCCGCAGCGCCTCCACCCCAGAGACCCGG ACCAAGTTCACACAGGACAATCTGTGCCACGCCCAGCGCGAGCGCCTGGACTCGGCCAAC CTGTGGGTGCTGGTGGACTGCATCCTTCGCGACACCTCCGAGGACCTGGGACTCCAGTGT GACGCCGTGAACCTGGCCTTCGGGCGCCGCTGTGAGGAACTGGAGGACGCGCGGCACAAG CTGCAGCACCACCTGCACAAGCCCCAGCTCACACCCCCCAACACCCCCAAGCTGGTGAGT GAGGTGGAGGAGCTGTACAAGTCCATCACAGCGCTGCGGGAGAAGCTTCTACAAGCGGAG CAGTCCCTGCGCAACCTCAAGGACATCCACATGAGCCTGGAGAAGGACGTCACTGCCATG ACCAACAGTCTCTTCATCGACCGCCAGAAGTGCATGGCCCATCGTACTTGCTACCCCACC ATTCTGCAGCTGGCTGGCTACCAGTGA >chr21_random_3|SGP_v1.0_predicted_protein_3|369_AA MWRQLAGLLEVWFQNCYARYHQAFADCNQSERELQGHESQQLAAETQTLAQPTQQDSTCR VGERLQDTHSWKSELQREVKVLAAETDLLLAQKQRLERALDAMEVPFSIATDNMQCSQCH QHANLVRDHVETELLKVPAALGGQDLWAQRGGAPGSSCGQATWLLQAHGRPALYALNREH TEICEMDWSDKVEAYNLDETFGRHHSQSTEPRSASTPETRTKFTQDNLCHAQRERLDSAN LWVLVDCILRDTSEDLGLQCDAVNLAFGRRCEELEDARHKLQHHLHKPQLTPPNTPKLVS EVEELYKSITALREKLLQAEQSLRNLKDIHMSLEKDVTAMTNSLFIDRQKCMAHRTCYPT ILQLAGYQ* # Gene 4 (Forward). 1 exons. 69 aa. Score = 6.59 Single 123107 123313 6.59 + 0 0 -1.16 0.00 24.37 -71.40 AA 1: 69 chr21_random_4 >chr21_random_4|SGP_v1.0_predicted_cDNA_4|207_NN ATGAAGTTATTCGGCTTCGGGAGCCGCAGGAGCCAAACGGCCAACGGCTCCATAGAACAT GTCTACACGGGTTCCGGATACCGAATCTGGGACTCCGAACTGCAGAAGATCCACAGGGCA GCTGTCAAGGGCGACGCCGCGGGGGTGGAGCGCTGCCTGGCGCGCAGGAGCGGAGACCTG GATGCCCTGGACAAGCAGCACAGGTAG >chr21_random_4|SGP_v1.0_predicted_protein_4|69_AA MKLFGFGSRRSQTANGSIEHVYTGSGYRIWDSELQKIHRAAVKGDAAGVERCLARRSGDL DALDKQHR* # Gene 5 (Reverse). 1 exons. 262 aa. Score = 24.94 Single 307097 307882 24.94 - 0 0 0.00 7.52 56.63 -274.05 AA 1:262 chr21_random_5 >chr21_random_5|SGP_v1.0_predicted_cDNA_5|786_NN ATGGCGGGGGCAAACGGCCCCGGCGGCAAAAACCGGCGGCGGCGGGAGCAAAAAGCCGGG GCGGCGGGGGCAAAAAGACGCGACGGCCAAAAGCCGCGGCGGCGGGGCGCAAAAAGCCAC GTCGGCAAAAGCCGTGGCGGCGGGGGCAAAAAGCCGCGGCGGCGGGGAGTAAAAAGCCGC GGTGATGGGGGTAAAAAGCCGCGTTGGCAAAAACCGCGGCGGCGGGGCGCAAAAAGCCGC GGAGGCGGGGAGCAAAAAGTCGCCGCGGCGGGGCGCAAAAAGCCGCGGCAGCGGGGGGTA AAAAGCCGTGTTGGCAAAAGCCGTGGCGGCGGGGACCAAAAAGCCGCAAAAACCGCGGCG GCGGGGCGCAAAAAGCCGCGGAGGCGGGGAGCAAAAAGTCGCCGCGGCGGGGCGCAAAAA GCCGCGGCAGCGGGGGGTAAAAAGCCGTGTCGGCAAAAGCCGCGGCGGCGGGGTCAAAAA GCCGCAAAAGCCGCGGCGGCGGGGGCAAAATACCGCGGTGGCAAAAAGCCCCGGCGGCGC GGGCAAAAAGCCGCGCTGGTGGGGGCAAAAACCATCTGGAGCGGGGGCAAAAAAAGCCGC GAGGGCGGCGGCGGGGGGAAAAAGTCGCAAAAAACACCGGCGGCTGGGGTAAAAAGCCAC GGCGGCAAAAAGCCTCGGCGGCGGGGGCAAAAAGCCGCGTTGTCAAAAGAGTGGCGGCGG GGGCCAAAAGCCGCGGCGGCGGGGACTGAAACCCACGGCGGCGGGGGCAAAATACTGCGG CGGTAA >chr21_random_5|SGP_v1.0_predicted_protein_5|262_AA MAGANGPGGKNRRRREQKAGAAGAKRRDGQKPRRRGAKSHVGKSRGGGGKKPRRRGVKSR GDGGKKPRWQKPRRRGAKSRGGGEQKVAAAGRKKPRQRGVKSRVGKSRGGGDQKAAKTAA AGRKKPRRRGAKSRRGGAQKAAAAGGKKPCRQKPRRRGQKAAKAAAAGAKYRGGKKPRRR GQKAALVGAKTIWSGGKKSREGGGGGKKSQKTPAAGVKSHGGKKPRRRGQKAALSKEWRR GPKAAAAGTETHGGGGKILRR* # Gene 6 (Reverse). 1 exons. 28 aa. Score = 0.53 Single 353287 353370 0.53 - 0 0 0.00 5.99 6.45 -28.35 AA 1: 28 chr21_random_6 >chr21_random_6|SGP_v1.0_predicted_cDNA_6|84_NN ATGGCGGGGCAAAAAGCCGCGGCGGGCAAAAAGTCGCGGCGGCGGCGGGGGGGCAAAAAT CCGCGGCGACGCGGGGCAAAATAG >chr21_random_6|SGP_v1.0_predicted_protein_6|28_AA MAGQKAAAGKKSRRRRGGKNPRRRGAK* # Gene 7 (Forward). 1 exons. 114 aa. Score = 23.85 Single 362198 362539 23.85 + 0 0 0.09 0.00 22.35 29.40 AA 1:114 chr21_random_7 >chr21_random_7|SGP_v1.0_predicted_cDNA_7|342_NN ATGGAACAGTACATCTATAAAAGGAAAACTGATGACATCTACATCCTAAATCTGAAGAGG ACCTGGGAGAAGCTTCTGCTGACAGCTTATGCCATTGTTGCCCTTGAAAACTCTGCTGAT GTCAATGTCAGGTCATCCAGGAATCCTGGCCAGTGGGCTGTGCTGAAGTTCGCTTCTGCC ACTGGAGCTACTCCTATTGCTGGTCACTTCACTACTGAAATCCTCACTAACCAGATCCAG GCAGCCTTCTGGAAGCCACGGCTTCTGGTTACTGATCTCAGGGCTGACCATCAGCCTCTC ACAGAAGCATCTTTTGTTAAGCTGACTATCACTACTCTATGA >chr21_random_7|SGP_v1.0_predicted_protein_7|114_AA MEQYIYKRKTDDIYILNLKRTWEKLLLTAYAIVALENSADVNVRSSRNPGQWAVLKFASA TGATPIAGHFTTEILTNQIQAAFWKPRLLVTDLRADHQPLTEASFVKLTITTL* # Gene 8 (Reverse). 2 exons. 111 aa. Score = 28.14 Terminal 644930 644992 -2.04 - 0 0 0.00 5.75 4.19 -21.00 AA 91:111 chr21_random_8 First 645625 645894 30.18 - 0 0 4.39 2.11 23.32 -0.68 AA 1: 90 chr21_random_8 >chr21_random_8|SGP_v1.0_predicted_cDNA_8|333_NN ATGGCGGAGAAGGAAGCTGTATCTTCAAAATGTGTCAATTTGGCTAAAGAGAATCAAGTT TTTCAACAGGAGTTATTATCTATGAAAAAAGTACAACAGGAATGTGAAAAACTTGAGGAG GATAAAAAGATGTTGGAAGAAGAAATATTAAATCTTAAGACACATATGGAAAACAGTATG GTAGAACTTAGTAAACTACAAGAATATAAATCAGAGCTAGATGAAAGGGCAATGCAGGCA GTAGAAAAATTAGAAGAAATCCATTTACAGGAACAAGCACAATATAAAAAACAATTAGAG CAGTTAAACAAGGATATAATACAGCTTCACTAA >chr21_random_8|SGP_v1.0_predicted_protein_8|111_AA MAEKEAVSSKCVNLAKENQVFQQELLSMKKVQQECEKLEEDKKMLEEEILNLKTHMENSM VELSKLQEYKSELDERAMQAVEKLEEIHLQEQAQYKKQLEQLNKDIIQLH* # Gene 9 (Forward). 4 exons. 142 aa. Score = 14.98 First 759867 759888 0.52 + 0 1 7.08 -0.86 2.23 -7.70 AA 1: 8 chr21_random_9 Internal 796989 797019 3.71 + 2 2 4.96 4.27 3.13 -10.85 AA 8: 18 chr21_random_9 Internal 816921 816995 1.32 + 1 2 2.80 5.51 4.53 -26.25 AA 18: 43 chr21_random_9 Terminal 820287 820584 9.43 + 1 0 -3.50 0.00 23.32 -24.81 AA 43:142 chr21_random_9 >chr21_random_9|SGP_v1.0_predicted_cDNA_9|426_NN ATGGCTGCGACCAAGCCAGGCGATGTTGGAATTTCTGATGAATCTGCAGTCAGATTAACC AAAGAAAGAAAGATTGGGAAAACGTATCCTCAGCAATTTCCCAAGAAACTGAAGGAAGAG CATGATAGAAACTCTCCAAACGACCTAAGCCAAACACAGCAGCAAATAAAGGAAATGAAA GAGATGTATGAAAATGCAGAAGCTAAAGTGAATAATTCCACTGGAAAGTGGAGCTGTGTA GAAGAGAGGATATGTCAACTCCAACATGAAAATCCGTGCATTGAACAGCAACTAGATGAT GTTCATCAGAAAGAGGATCATAAAGAGATAGTAACTAATATCCAAAGAGGCTTTATTGAG AGTGGAAAGAAAGACCACATGCTAGAAGAGAAAAATAAGAAGCTAATGAACGAATGTGAT CATTAA >chr21_random_9|SGP_v1.0_predicted_protein_9|142_AA MAATKPGDVGISDESAVRLTKERKIGKTYPQQFPKKLKEEHDRNSPNDLSQTQQQIKEMK EMYENAEAKVNNSTGKWSCVEERICQLQHENPCIEQQLDDVHQKEDHKEIVTNIQRGFIE SGKKDHMLEEKNKKLMNECDH* # Gene 10 (Forward). 3 exons. 134 aa. Score = 15.67 First 914241 914256 -8.06 + 0 1 0.33 1.80 0.93 -5.60 AA 1: 6 chr21_random_10 Internal 945071 945160 4.38 + 2 1 3.88 0.10 7.49 3.19 AA 6: 36 chr21_random_10 Terminal 945197 945492 19.34 + 2 0 -1.74 0.00 14.11 79.60 AA 36:134 chr21_random_10 >chr21_random_10|SGP_v1.0_predicted_cDNA_10|402_NN ATGCGGCAAATATTGGCTACCCAAGGTGCGAAAAAGAAAGAAGGCCGAAGGGAAGAAGGT GGTGCTCACCCTTGCTGTCTTGAAAAAGCAGGAGACCATGAAAGTGGACATTTTGGCATT GGACAGAACATCCAGCCCAAAAGGGACCTCACTTACTTTGTCAAATGGCCCCATTATACT AGGTTGCAGCAGCAGAGAGCCATCCTCTATAAACAGCTAGAAGTGCCTTCTGTGATTAAT CAGTTCACCAGGGCCTTGGACCACCAAACAGCTGCTCAATGGGGTAAGCGGGCTGGCAAG TACAGACCAGAGACAAAGCAAGAGAAACAGCAGAGACTGTTGGCCTGGGCTGAGAAGAAA GCAAAGGAGACATCCCCACTAAGAGATCACCTGTCCTTTTAA >chr21_random_10|SGP_v1.0_predicted_protein_10|134_AA MRQILATQGAKKKEGRREEGGAHPCCLEKAGDHESGHFGIGQNIQPKRDLTYFVKWPHYT RLQQQRAILYKQLEVPSVINQFTRALDHQTAAQWGKRAGKYRPETKQEKQQRLLAWAEKK AKETSPLRDHLSF* # Gene 11 (Reverse). 2 exons. 111 aa. Score = 29.28 Terminal 1461994 1462056 -1.35 - 0 0 0.00 5.75 4.69 -21.00 AA 91:111 chr21_random_11 First 1462650 1462919 30.63 - 0 0 4.39 2.11 23.63 -0.54 AA 1: 90 chr21_random_11 >chr21_random_11|SGP_v1.0_predicted_cDNA_11|333_NN ATGGCGGAGAAGGAAGCTGTATCTTCAAAATGTGTCAATTTGGCTAAAGAGAATCAAGTT TTTCAACAGGAGTTATTATCTATGAAAAAAGTACAACAGGAATGTGAAAAACTTGAGGAA GATAAAAAGATGTTGGAAGAAGAAATATTAAATCTTAAGACACATATGGAAAACAGTATG GTAGAACTTAGTAAACTACAAGAATATAAATCAGAGCTAGATGAAAGGGCAATGCAGGCA GTAGAAAAATTAGAAGAAATCCATTTACAGGAACAAGCACAATATAAAAAACAATTAGAG CAGTTAAACAAGGATATCATACAGCTTCACTAA >chr21_random_11|SGP_v1.0_predicted_protein_11|111_AA MAEKEAVSSKCVNLAKENQVFQQELLSMKKVQQECEKLEEDKKMLEEEILNLKTHMENSM VELSKLQEYKSELDERAMQAVEKLEEIHLQEQAQYKKQLEQLNKDIIQLH* # Gene 12 (Reverse). 1 exons. 69 aa. Score = 6.51 Single 1577904 1578110 6.51 - 0 0 0.00 -1.16 24.32 -71.40 AA 1: 69 chr21_random_12 >chr21_random_12|SGP_v1.0_predicted_cDNA_12|207_NN ATGAAGTTATTCGGCTTCGGGAGCCGCAGGAGCCAAACGGCCAACGGCTCCATAGAACAT GTCTACACGGGTTCCGGATACCGAATCTGGGACTCCGAACTGCAGAAGATCCACAGGGCA GCTGTCAAGGGCGACGCCGCGGGGGTGGAGCGCTGCCTGGCGCGCAGGAGCGGAGACCTG GATGCCCTGGACAAGCAGCACAGGTAG >chr21_random_12|SGP_v1.0_predicted_protein_12|69_AA MKLFGFGSRRSQTANGSIEHVYTGSGYRIWDSELQKIHRAAVKGDAAGVERCLARRSGDL DALDKQHR* # Gene 13 (Forward). 5 exons. 369 aa. Score = 159.86 First 1579160 1579183 -7.05 + 0 0 1.12 0.43 1.96 -8.40 AA 1: 8 chr21_random_13 Internal 1592820 1593319 62.66 + 0 2 -0.76 1.43 55.66 -16.55 AA 9:175 chr21_random_13 Internal 1595050 1595155 17.74 + 1 0 0.65 0.44 19.08 7.55 AA 175:210 chr21_random_13 Internal 1595854 1596084 44.52 + 0 0 2.75 1.84 33.72 15.04 AA 211:287 chr21_random_13 Terminal 1597639 1597884 42.00 + 0 0 1.83 0.00 35.85 8.35 AA 288:369 chr21_random_13 >chr21_random_13|SGP_v1.0_predicted_cDNA_13|1107_NN ATGTGGCGTCAGCTGGCGGGCCTGCTGGAGGTGTGGTTCCAGAACTGCTATGCTCGCTAC CACCAGGCCTTCGCCGACTGCAACCAGTCAGAGCGGGAGCTGCAGGGGCACGAGAGCCAG CAGCTGGCCGCAGAGACCCAGACGCTGGCACAGCCGACACAGCAAGACTCCACGTGCAGG GTGGGCGAGCGACTGCAGGACACGCACAGCTGGAAGTCGGAGCTGCAGCGCGAGGTGAAG GTGCTGGCTGCGGAGACCGACCTGCTGCTGGCCCAGAAGCAACGGCTGGAGCGCGCCCTG GATGCCATGGAGGTGCCCTTCTCCATTGCCACTGACAACATGCAGTGCAGCCAGTGCCAC CAGCACGCCAACCTTGTGCGTGACCATGTGGAGACGGAGCTGCTGAAGGTGCCAGCAGCC TTGGGTGGCCAGGACTTGTGGGCACAGAGAGGAGGAGCCCCCGGCAGTTCATGTGGACAA GCCACGTGGCTGCTGCAAGCACACGGGAGACCAGCCCTCTATGCACTGAACAGAGAGCAC ACGGAGATCTGCGAGATGGACTGGTCGGACAAGGTGGAGGCCTACAACCTCGACGAGACT TTCGGGCGCCACCACAGCCAGAGCACCGAGCCCCGCAGCGCCTCCACCCCAGAGACCCGG ACCAAGTTCACACAGGACAATCTGTGCCACGCCCAGCGCGAGCGCCTGGACTCGGCCAAC CTGTGGGTGCTGGTGGACTGCATCCTTCGCGACACCTCCGAGGACCTGGGACTCCAGTGT GACGCCGTGAACCTGGCCTTCGGGCGCCGCTGTGAGGAACTGGAGGACGCGCGGCACAAG CTGCAGCACCACCTGCACAAGCCCCAGCTCACACCCCCCAACACCCCCAAGCTGGTGAGT GAGGTGGAGGAGCTGTACAAGTCCATCACAGCGCTGCGGGAGAAGCTTCTACAAGCGGAG CAGTCCCTGCGCAACCTCAAGGACATCCACATGAGCCTGGAGAAGGACGTCACTGCCATG ACCAACAGTCTCTTCATCGACCGCCAGAAGTGCATGGCCCATCGTACTTGCTACCCCACC ATTCTGCAGCTGGCTGGCTACCAGTGA >chr21_random_13|SGP_v1.0_predicted_protein_13|369_AA MWRQLAGLLEVWFQNCYARYHQAFADCNQSERELQGHESQQLAAETQTLAQPTQQDSTCR VGERLQDTHSWKSELQREVKVLAAETDLLLAQKQRLERALDAMEVPFSIATDNMQCSQCH QHANLVRDHVETELLKVPAALGGQDLWAQRGGAPGSSCGQATWLLQAHGRPALYALNREH TEICEMDWSDKVEAYNLDETFGRHHSQSTEPRSASTPETRTKFTQDNLCHAQRERLDSAN LWVLVDCILRDTSEDLGLQCDAVNLAFGRRCEELEDARHKLQHHLHKPQLTPPNTPKLVS EVEELYKSITALREKLLQAEQSLRNLKDIHMSLEKDVTAMTNSLFIDRQKCMAHRTCYPT ILQLAGYQ* # Gene 14 (Reverse). 2 exons. 60 aa. Score = 6.15 Terminal 1607305 1607475 6.10 - 0 0 0.00 1.00 10.35 15.31 AA 4: 60 chr21_random_14 First 1615790 1615798 0.05 - 0 0 2.11 3.53 2.63 -3.15 AA 1: 3 chr21_random_14 >chr21_random_14|SGP_v1.0_predicted_cDNA_14|180_NN ATGGCGGTGGTGCAGCACCAGTTTGAATTTGAATACCAGACCAAAGTGGATGGTGAGATA ATCCTTCATCTTTATGACAAAGGAGGAATTGAGCAAACAATTTGTACGTTGGTTGGTGTG TTTGCATTTGTTTTACTGGATTCTGCCAATAAGAAAGTGTCCCTGGACAGAGATACATAA >chr21_random_14|SGP_v1.0_predicted_protein_14|60_AA MAVVQHQFEFEYQTKVDGEIILHLYDKGGIEQTICTLVGVFAFVLLDSANKKVSLDRDT*