## date Tue Jan 10 18:13:44 2006
## source-version: geneid v 1.2 -- geneid@imim.es
# Sequence chr6_hla_hap2 - Length = 150447 bps
# Optimal Gene Structure. 2 genes. Score = 68.30 
# Gene 1 (Reverse). 7 exons. 252 aa. Score = 27.05 
Internal     4249     4272	 2.82	- 0 0	 2.59	 6.61	 2.16	-8.40	AA 245:252 chr6_hla_hap2_1
Internal     5653     5843	 0.36	- 2 0	 0.63	 5.13	11.92	-66.85	AA 181:244 chr6_hla_hap2_1
Internal     8581     8850	23.63	- 2 1	 3.70	 4.12	30.09	-94.50	AA  91:181 chr6_hla_hap2_1
Internal    18414    18514	-0.49	- 1 1	 4.20	 4.12	 4.46	-35.35	AA  57: 91 chr6_hla_hap2_1
Internal    50867    50890	 0.58	- 1 2	 2.59	 6.12	 0.71	-8.40	AA  49: 57 chr6_hla_hap2_1
Internal    85472    85605	-2.96	- 0 2	 0.93	 1.93	10.30	-46.90	AA   5: 49 chr6_hla_hap2_1
   First    91308    91319	 3.11	- 0 0	 4.71	 3.27	 2.05	-4.20	AA   1:  4 chr6_hla_hap2_1

>chr6_hla_hap2_1|SGP_v1.0_predicted_cDNA_1|756_NN
ATGCTGCGCCAGGCTTTGGTCACCAGTGAGTTCCAGGACTGCCTGGCCCGGTGCACCATG
CATTGCAACCACAAAGCCAAAGATTCAATAGATGCTGGGAGTAAGGAGCTTCAGGTGAAG
CAGCAGCTGGTTGGCTGTGTGACCAAGACACTCTGGACTTCAGCCAACAGCATGGTGTGT
CTGAAGCTCCCTGGAGGCTCCTGTATGGCAGCGCTGACAGTGACATTGACGGTGCTGAGC
TCCCCACTGGCTTTGGCTGGGGACACCCAACCACGTTTCTTGGAGCAGGCTAAGTGTGAG
TGTCATTTCCTCAATGGGACGGAGCGAGTGTGGAACCTGATCAGATACATCTATAACCAA
GAGGAGTACGCGCGCTACAACAGTGACCTGGGGGAGTACCAGGCGGTGACGGAGCTGGGG
CGGCCTGACGCTGAGTACTGGAACAGCCAGAAGGACCTCCTGGAGCGGAGGCGGGCCGAG
GTGGACACCTACTGCAGATACAACTACGGGGTTGTGGAGAGCTTCACAGTGCAGCGGCGA
GTCCAACCTAAGGTGACTGTGTATCCTTCAAAGACCCAGCCCCTGCAGCACCACAACCTC
CTGGTCTGCTCTGTGAATGGTTTCTATCCAGGCAGCATTGAAGTCAGGTGGTTCCGGAAC
GGCCAGGAAGAGAAGGCTGGGGTGGTGTCCACAGGCCTGATCCAGAATGGAGACTGGACC
TTCCAGACCCTGGACACTCTGGACTTCAGCCAACAG

>chr6_hla_hap2_1|SGP_v1.0_predicted_protein_1|252_AA
MLRQALVTSEFQDCLARCTMHCNHKAKDSIDAGSKELQVKQQLVGCVTKTLWTSANSMVC
LKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYIYNQ
EEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTVQRR
VQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT
FQTLDTLDFSQQ

# Gene 2 (Reverse). 3 exons. 227 aa. Score = 41.25 
Terminal    98159    98289	 3.61	- 2 0	 0.00	-3.42	21.38	-44.80	AA 184:227 chr6_hla_hap2_2
Internal   133887   134168	 2.70	- 2 1	-0.13	 4.64	19.41	-98.70	AA  90:184 chr6_hla_hap2_2
Internal   137625   137894	34.94	- 2 1	 3.70	 4.45	38.34	-94.50	AA   1: 90 chr6_hla_hap2_2

>chr6_hla_hap2_2|SGP_v1.0_predicted_cDNA_2|683_NN
CACGTTTCTTGGAGCAGGTTAAACATGAGTGTCATTTCTTCAACGGGACGGAGCGGGTGC
GGTTCCTGGACAGATACTTCTATCACCAAGAGGAGTACGTGCGCTTCGACAGCGACGTGG
GGGAGTACCGGGCGGTGACGGAGCTGGGGCGGCCTGATGCCGAGTACTGGAACAGCCAGA
AGGACCTCCTGGAGCAGAAGCGGGCCGCGGTGGACACCTACTGCAGACACAACTACGGGG
TTGGTGAGAGCTTCACAGTGCAGCGGCGAGTCTATCCTGAGGTGACTGTGTATCCTGCAA
AGACCCAGCCCCTGCAGCACCACAACCTCCTGGTCTGCTCTGTGAATGGTTTCTATCCAG
GCAGCATTGAAGTCAGGTGGTTCCGGAACGGCCAGGAAGAGAAGACTGGGGTGGTGTCCA
CAGGCCTGATCCAGAATGGAGACTGGACCTTCCAGACCCTGGTGATGCTGGAAACAGTTC
CTCGGAGTGGAGAGGTTTACACCTGCCAAGTGGAGCACCCAAGCCTGACGAGCCCTCTCA
CAGTGGAATGGAAGGAGTACGTGCGCTTCAACAGCGACATGGGGGAGTTCCGGGCGGTGA
CTGAGCTGGGGCGGCCTGACGCTGAGTACTGGAACAGCCAGAAGGACATCCTGGAGCAGA
AGCGGGCCGAAGTGGACAACTAA

>chr6_hla_hap2_2|SGP_v1.0_predicted_protein_2|227_AA
caRFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNS
QKDLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFY
PGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTSP
LTVEWKEYVRFNSDMGEFRAVTELGRPDAEYWNSQKDILEQKRAEVDN*