## date Tue Jan 10 18:13:29 2006
## source-version: geneid v 1.2 -- geneid@imim.es
# Sequence chr6_hla_hap1 - Length = 139182 bps
# Optimal Gene Structure. 3 genes. Score = 76.90 
# Gene 1 (Forward). 4 exons. 255 aa. Score = 19.68 
   First     4288     4369	 3.69	+ 0 1	 4.55	 4.45	 5.12	-28.70	AA   1: 28 chr6_hla_hap1_1
Internal     6782     7027	10.28	+ 2 1	 4.28	-0.05	23.88	-86.10	AA  28:110 chr6_hla_hap1_1
Internal     7519     7800	 7.24	+ 2 1	 3.91	 1.17	22.11	-98.70	AA 110:204 chr6_hla_hap1_1
Terminal     8090     8244	-1.53	+ 2 0	 5.23	 0.00	 9.59	-53.20	AA 204:255 chr6_hla_hap1_1

>chr6_hla_hap1_1|SGP_v1.0_predicted_cDNA_1|765_NN
ATGGCCATAAGTGGAGTCCCTGTGCTAGGATTTTTCATCATAGCTGTGCTGATGAGCGCT
CAGGAATCATGGGCTATCAAAGAAGAACATGTGATCATCCAGGCCGAGTTCTATCTGAAT
CCTGACCAATCAGGCGAGTTTATGTTTGACTTTGATGGTGATGAGATTTTCCATGTGGAT
ATGGCAAAGAAGGAGACGGTCTGGCGGCTTGAAGAATTTGGACGATTTGCCAGCTTTGAG
GCTCAAGGTGCATTGGCCAACATAGCTGTGGACAAAGCCAACCTGGAAATCATGACAAAG
CGCTCCAACTATACTCCGATCACCAATGTACCTCCAGAGGTAACTGTGCTCACGAACAGC
CCTGTGGAACTGAGAGAGCCCAACGTCCTCATCTGTTTCATAGACAAGTTCACCCCACCA
GTGGTCAATGTCACGTGGCTTCGAAATGGAAAACCTGTCACCACAGGAGTGTCAGAGACA
GTCTTCCTGCCCAGGGAAGACCACCTTTTCCGCAAGTTCCACTATCTCCCCTTCCTGCCC
TCAACTGAGGACGTTTACGACTGCAGGGTGGAGCACTGGGGCTTGGATGAGCCTCTTCTC
AAGCACTGGGAGTTTGATGCTCCAAGCCCTCTCCCAGAGACTACAGAGAACGTGGTGTGT
GCCCTGGGCCTGACTGTGGGTCTGGTGGGCATCATTATTGGGACCATCTTCATCATCAAG
GGATTGCGCAAAAGCAATGCAGCAGAACGCAGGGGGCCTCTGTAA

>chr6_hla_hap1_1|SGP_v1.0_predicted_protein_1|255_AA
MAISGVPVLGFFIIAVLMSAQESWAIKEEHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVD
MAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNS
PVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLP
STEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIGTIFIIK
GLRKSNAAERRGPL*

# Gene 2 (Reverse). 5 exons. 192 aa. Score = 28.60 
Terminal    60554    60562	-1.98	- 0 0	 0.00	 6.58	 0.70	-2.10	AA 190:192 chr6_hla_hap1_2
Internal    61362    61385	 4.01	- 0 0	 2.59	 6.61	 2.67	-8.40	AA 182:189 chr6_hla_hap1_2
Internal    62745    62935	-1.38	- 2 0	 0.63	 5.35	10.41	-66.85	AA 118:181 chr6_hla_hap1_2
Internal    65210    65479	26.06	- 2 1	 3.70	 3.72	32.67	-94.50	AA  28:118 chr6_hla_hap1_2
   First    99755    99836	 1.89	- 0 1	 4.53	 1.65	 6.55	-28.70	AA   1: 28 chr6_hla_hap1_2

>chr6_hla_hap1_2|SGP_v1.0_predicted_cDNA_2|576_NN
ATGCTGAGTGGAGTCGGGGGCTTCGTGCTGGGCCTGCTCTTCCTTGGGACGGGGCTGTTC
ATCTACTTCAAGAATCAGAAAGCACGTTTCTTGGAGCTGCGTAAGTCTGAGTGTCATTTC
TTCAATGGGACGGAGCGGGTGCGGTACCTGGACAGATACTTCCATAACCAGGAGGAGTTC
CTGCGCTTCGACAGCGACGTGGGGGAGTACCGGGCGGTGACGGAGCTGGGGCGGCCTGTC
GCCGAGTCCTGGAACAGCCAGAAGGACCTCCTGGAGCAGAAGCGGGGCCGGGTGGACAAT
TACTGCAGACACAACTACGGGGTTGGTGAGAGCTTCACAGTGCAGCGGCGAGTCCATCCT
CAGGTGACTGTGTATCCTGCAAAGACCCAGCCCCTGCAGCACCACAACCTCCTGGTCTGC
TCTGTGAGTGGTTTCTATCCAGGCAGCATTGAAGTCAGGTGGTTCCGGAACGGCCAGGAA
GAGAAGGCTGGGGTGGTGTCCACGGGCCTGATCCAGAATGGAGACTGGACCTTCCAGACC
CTGGACACTCTGGACTTCAGCCAACAGGATTCCTGA

>chr6_hla_hap1_2|SGP_v1.0_predicted_protein_2|192_AA
MLSGVGGFVLGLLFLGTGLFIYFKNQKARFLELRKSECHFFNGTERVRYLDRYFHNQEEF
LRFDSDVGEYRAVTELGRPVAESWNSQKDLLEQKRGRVDNYCRHNYGVGESFTVQRRVHP
QVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQT
LDTLDFSQQDS*

# Gene 3 (Reverse). 2 exons. 148 aa. Score = 28.61 
Terminal   100692   100867	-1.92	- 2 0	 0.00	 0.28	15.44	-60.55	AA  90:148 chr6_hla_hap1_3
Internal   129200   129469	30.53	- 2 1	 3.70	 4.00	35.63	-94.50	AA   1: 90 chr6_hla_hap1_3

>chr6_hla_hap1_3|SGP_v1.0_predicted_cDNA_3|446_NN
CACGTTTCTTGGAGTACTCTACGTCTGAGTGTCATTTCTTCAATGGGACGGAGCGGGTGC
GGTACCTGGACAGATACTTCCATAACCAGGAGGAGAACGTGCGCTTCGACAGCGACGTGG
GGGAGTTCCGGGCGGTGACGGAGCTGGGGCGGCCTGATGCCGAGTACTGGAACAGCCAGA
AGGACCTCCTGGAGCAGAAGCGGGGCCGGGTGGACAACTACTGCAGACACAACTACGGGG
TTGTGGAGAGCTTCACAGTGCAGCGGCGAGGCAGCATTGAAGTCAGGTGGTTCCGGAATG
GTCAGGAAGAGAAGGCTGCGGTGGTCTCCATAGGCCTGATCCAGAATGGAGACTGGACTT
TCCAGACCCTGGTGATGCTGGAAACAGTTCCTCGGAGTGGAGGAGCATCCAAGCATGACG
AGCCCTCTCACAGTGCAATGGAGTGA

>chr6_hla_hap1_3|SGP_v1.0_predicted_protein_3|148_AA
caRFLEYSTSECHFFNGTERVRYLDRYFHNQEENVRFDSDVGEFRAVTELGRPDAEYWNS
QKDLLEQKRGRVDNYCRHNYGVVESFTVQRRGSIEVRWFRNGQEEKAAVVSIGLIQNGDW
TFQTLVMLETVPRSGGASKHDEPSHSAME*