## date Mon May 23 23:08:58 2005
## source-version: geneid v 1.2 -- geneid@imim.es
# Sequence chr6_hla_hap2 - Length = 150447 bps
# Optimal Gene Structure. 6 genes. Score = 298.91 
# Gene 1 (Reverse). 2 exons. 36 aa. Score = 1.22 
Internal     4249     4272	 1.58	- 2 1	 2.59	 6.61	 1.26	-8.40	AA  28: 36 chr6_hla_hap2_1
   First     4747     4828	-0.36	- 0 1	 4.53	 1.65	 4.91	-28.70	AA   1: 28 chr6_hla_hap2_1

>chr6_hla_hap2_1|SGP_v1.0_predicted_cDNA_1|106_NN
ATGCTGAGTGGAGTCGGGGGCTTTGTGCTGGGCCTGCTCTTCCTTGGGACAGGGCTGTTC
ATCTACTTCAGGAATCAGAAAGGACACTCTGGACTTCAGCCAACAG

>chr6_hla_hap2_1|SGP_v1.0_predicted_protein_1|36_AA
MLSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTg

# Gene 2 (Reverse). 3 exons. 208 aa. Score = 66.37 
Terminal     5557     5843	24.80	- 2 0	 0.00	 5.13	16.54	33.43	AA 113:208 chr6_hla_hap2_2
Internal     8581     8850	45.07	- 2 1	 3.70	 4.12	30.09	18.33	AA  23:113 chr6_hla_hap2_2
   First    18414    18480	-3.49	- 0 1	 4.20	-1.16	 5.74	-23.45	AA   1: 23 chr6_hla_hap2_2

>chr6_hla_hap2_2|SGP_v1.0_predicted_cDNA_2|624_NN
ATGGCAGCGCTGACAGTGACATTGACGGTGCTGAGCTCCCCACTGGCTTTGGCTGGGGAC
ACCCAACCACGTTTCTTGGAGCAGGCTAAGTGTGAGTGTCATTTCCTCAATGGGACGGAG
CGAGTGTGGAACCTGATCAGATACATCTATAACCAAGAGGAGTACGCGCGCTACAACAGT
GACCTGGGGGAGTACCAGGCGGTGACGGAGCTGGGGCGGCCTGACGCTGAGTACTGGAAC
AGCCAGAAGGACCTCCTGGAGCGGAGGCGGGCCGAGGTGGACACCTACTGCAGATACAAC
TACGGGGTTGTGGAGAGCTTCACAGTGCAGCGGCGAGTCCAACCTAAGGTGACTGTGTAT
CCTTCAAAGACCCAGCCCCTGCAGCACCACAACCTCCTGGTCTGCTCTGTGAATGGTTTC
TATCCAGGCAGCATTGAAGTCAGGTGGTTCCGGAACGGCCAGGAAGAGAAGGCTGGGGTG
GTGTCCACAGGCCTGATCCAGAATGGAGACTGGACCTTCCAGACCCTGGTGATGCTGGAA
ACAGTTCCTCGGAGTGGAGAGGTTTACACCTGCCAAGTGGAGCATCCAAGCATGATGAGC
CCTCTCACGGTGCAATGGAGTTAG

>chr6_hla_hap2_2|SGP_v1.0_predicted_protein_2|208_AA
MAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNS
DLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVY
PSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLE
TVPRSGEVYTCQVEHPSMMSPLTVQWS*

# Gene 3 (Reverse). 2 exons. 102 aa. Score = 12.43 
Terminal    52484    52770	19.06	- 2 0	 0.00	 4.75	12.93	32.27	AA   7:102 chr6_hla_hap2_3
   First    78268    78286	-6.63	- 0 1	 3.15	 0.37	 0.58	-6.65	AA   1:  7 chr6_hla_hap2_3

>chr6_hla_hap2_3|SGP_v1.0_predicted_cDNA_3|306_NN
ATGAACAAATTCCACTTAGTCCATCCTAAGGTGACTGTGTATCCTTTAAAGACCCAGCCC
CTGCAGCACCACAACCTCCTGGTCTGCTCTGTGAGTGGTTTCTGTCCAGCCAGCATTGAA
GTCAGGTGGTTCCGGAACGGCCAGGAAGAGAAGGCTGGGGTGGTGTCCACAGGCCTGATC
CAGAATGGAGACTGGACCTTCCAGACACTGATGATGCTGGAAACAGTTCCTCAGAGTGGA
GAGGTTTACACCTGCCAAGTGGAGCATCCAAGCATGATGAGCCCTCTCACGGTGCAATGG
AGTTAG

>chr6_hla_hap2_3|SGP_v1.0_predicted_protein_3|102_AA
MNKFHLVHPKVTVYPLKTQPLQHHNLLVCSVSGFCPASIEVRWFRNGQEEKAGVVSTGLI
QNGDWTFQTLMMLETVPQSGEVYTCQVEHPSMMSPLTVQWS*

# Gene 4 (Forward). 1 exons. 289 aa. Score = 79.09 
  Single    83020    83886	79.09	+ 0 0	-0.28	 0.00	46.73	147.17	AA   1:289 chr6_hla_hap2_4

>chr6_hla_hap2_4|SGP_v1.0_predicted_cDNA_4|867_NN
ATGATAACAGCTAAGCCAGGGAAAACACCGATTCAGGTATTACACGAATACGGCATGAAG
ACCAAGAACATCCCAGTTTATGAATGTGAAAGATCTGATGTGCAAATACACGTGCCCACT
TTCACCTTCAGAGTAACCGTTGGTGACATAACCTGCACAGGTGAAGGTACAAGTAAGAAG
CTGGCGAAACATAGAGCTGCAGAGGCTGCCATAAACATTTTGAAAGCCAATGCAAGTACT
TGCTTTGCAGTTCCTGACCCCTTAATGCCTGACCCTTCCAAGCAACCAAAGAACCAGCTT
AATCTTATTGGTTCATTACAGGAATTGGCTATTCATCATGGCTGGAGACTTCCTGAATAT
ACCCTTTCCCAGGAGGGAGGACCTGCTCATAAGAGAGAATATACTACAATTTGCAGGCTA
GAGTCATTTATGGAAACTGGAAAGGGGGCATCAAAAAAGCAAGCCAAAAGGAATGCTGCT
GAGAAATTTCTTGCCAAATTTAGTAATATTTCTCCAGAGAACCACATTTCTTTAACAAAT
GTAGTAGGACATTCTTTAGGATGTACTTGGCATTCCTTGAGGAATTCTCCTGGTGAAAAG
AACAACTTATTGAAAAGAAGCCTCCTTAGTATTCCAAATACAGATTACATCCAGCTGCTT
AGTGAAATTGCCAAGGAACAAGGTTTTAATATAACATATTTGGATATAGATGAACTGAGC
GCCAATGGACAATATCAATGTCTTGCTGAACTGTCCACCAGCCCCATCACAGTCTGTCAT
GGCTCCGGTATCTCCTGTGGCAATGCACAAAGTGATGCAGCTCACAATGCTTTGCAGTAT
TTAAAGATAATAGCAGAAAGAAAGTAA

>chr6_hla_hap2_4|SGP_v1.0_predicted_protein_4|289_AA
MITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKK
LAKHRAAEAAINILKANASTCFAVPDPLMPDPSKQPKNQLNLIGSLQELAIHHGWRLPEY
TLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISPENHISLTN
VVGHSLGCTWHSLRNSPGEKNNLLKRSLLSIPNTDYIQLLSEIAKEQGFNITYLDIDELS
ANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK*

# Gene 5 (Reverse). 3 exons. 166 aa. Score = 35.46 
Terminal    85393    85605	15.37	- 0 0	 0.00	 1.93	16.33	13.52	AA  96:166 chr6_hla_hap2_5
Internal    89732    90004	16.98	- 0 0	-0.13	-1.07	15.79	48.20	AA   5: 95 chr6_hla_hap2_5
   First    91308    91319	 3.11	- 0 0	 4.71	 3.27	 2.05	-4.20	AA   1:  4 chr6_hla_hap2_5

>chr6_hla_hap2_5|SGP_v1.0_predicted_cDNA_5|498_NN
ATGCTGCGCCAGGTGACTGTGTATCCTTCAAAAGACCAGCCCCTGCAGCACCACAACCTC
CTGGTCTGCTCTGTGAGTGGTTTCTATCCAGGCAGCATTGAAGTCAGGTGGTTCCAGAAT
GGCCAGGAAGAGAAGGCTGGGGTGGTGTCCACAGGCCTGATCCAGAATGGAGACTGGACC
TTCCAGACCCTGGTGATGCTGGAAACAGTTCCTCAGAATGCAGAGGTTTACACCTGTCAA
CTGGAGCACCCAAGCATGATGAGCCTTCTCATGCAGTGGAATGGAGCTTTGGTCACCAGT
GAGTTCCAGGACTGCCTGGCCCGGTGCACCATGCATTGCAACCACAAAGCCAAAGATTCA
ATAGATGCTGGGAGTAAGGAGCTTCAGGTGAAGCAGCAGCTGGTTGGCTGTGTGACCAAG
TGTGTGGATGACCACATGCATGTCATCCCAACTATGACCAAGAAGACAAAGGAGCCTCTC
TCATCCATTGGGAAATAA

>chr6_hla_hap2_5|SGP_v1.0_predicted_protein_5|166_AA
MLRQVTVYPSKDQPLQHHNLLVCSVSGFYPGSIEVRWFQNGQEEKAGVVSTGLIQNGDWT
FQTLVMLETVPQNAEVYTCQLEHPSMMSLLMQWNGALVTSEFQDCLARCTMHCNHKAKDS
IDAGSKELQVKQQLVGCVTKCVDDHMHVIPTMTKKTKEPLSSIGK*

# Gene 6 (Reverse). 4 exons. 261 aa. Score = 104.34 
Terminal    98159    98289	14.16	- 2 0	 0.00	-3.42	21.38	10.71	AA 218:261 chr6_hla_hap2_6
Internal   133887   134168	28.13	- 2 1	-0.13	 4.64	19.41	35.15	AA 124:218 chr6_hla_hap2_6
Internal   137625   137894	57.75	- 2 1	 3.70	 4.45	38.34	25.53	AA  34:124 chr6_hla_hap2_6
Internal   146152   146252	 4.30	- 1 1	 3.59	 3.87	 3.42	 4.27	AA   1: 34 chr6_hla_hap2_6

>chr6_hla_hap2_6|SGP_v1.0_predicted_cDNA_6|784_NN
CATGGTGTGTCTGAAGTTCCCTGGAGGCTCCTGCATGGCAGCTCTGACAGTGACACTGAT
GGTGCTGAGCTCCCCACTGGCTTTGGCTGGGGACACCCGACCACGTTTCTTGGAGCAGGT
TAAACATGAGTGTCATTTCTTCAACGGGACGGAGCGGGTGCGGTTCCTGGACAGATACTT
CTATCACCAAGAGGAGTACGTGCGCTTCGACAGCGACGTGGGGGAGTACCGGGCGGTGAC
GGAGCTGGGGCGGCCTGATGCCGAGTACTGGAACAGCCAGAAGGACCTCCTGGAGCAGAA
GCGGGCCGCGGTGGACACCTACTGCAGACACAACTACGGGGTTGGTGAGAGCTTCACAGT
GCAGCGGCGAGTCTATCCTGAGGTGACTGTGTATCCTGCAAAGACCCAGCCCCTGCAGCA
CCACAACCTCCTGGTCTGCTCTGTGAATGGTTTCTATCCAGGCAGCATTGAAGTCAGGTG
GTTCCGGAACGGCCAGGAAGAGAAGACTGGGGTGGTGTCCACAGGCCTGATCCAGAATGG
AGACTGGACCTTCCAGACCCTGGTGATGCTGGAAACAGTTCCTCGGAGTGGAGAGGTTTA
CACCTGCCAAGTGGAGCACCCAAGCCTGACGAGCCCTCTCACAGTGGAATGGAAGGAGTA
CGTGCGCTTCAACAGCGACATGGGGGAGTTCCGGGCGGTGACTGAGCTGGGGCGGCCTGA
CGCTGAGTACTGGAACAGCCAGAAGGACATCCTGGAGCAGAAGCGGGCCGAAGTGGACAA
CTAA

>chr6_hla_hap2_6|SGP_v1.0_predicted_protein_6|261_AA
cMVCLKFPGGSCMAALTVTLMVLSSPLALAGDTRPRFLEQVKHECHFFNGTERVRFLDRY
FYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQKRAAVDTYCRHNYGVGESFT
VQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQN
GDWTFQTLVMLETVPRSGEVYTCQVEHPSLTSPLTVEWKEYVRFNSDMGEFRAVTELGRP
DAEYWNSQKDILEQKRAEVDN*