## date Mon May 23 23:09:19 2005 ## source-version: geneid v 1.2 -- geneid@imim.es # Sequence chr5_random - Length = 143687 bps # Optimal Gene Structure. 3 genes. Score = 443.32 # Gene 1 (Reverse). 3 exons. 910 aa. Score = 399.57 Terminal 13848 16549 404.32 - 2 0 0.00 3.59 193.53 769.15 AA 10:910 chr5_random_1 Internal 24377 24396 -3.96 - 1 1 2.81 4.61 -0.99 -7.00 AA 3: 10 chr5_random_1 First 26155 26162 -0.79 - 0 2 0.82 5.63 0.35 -2.80 AA 1: 3 chr5_random_1 >chr5_random_1|SGP_v1.0_predicted_cDNA_1|2730_NN ATGTGGGAGTACTCTTTGTTCTGGGTTGTGTCACATTTGAAGACGAGCACTGAGGATGAG GAACCAACTGAAGAATATGAAAATGTTGGAAATGCAGCATCTAAGTGGCCAAAAGTGGAG GATCCTATCCCTGAATCTAAGGTTGGTGACACATGTGTTTGGGATAGCAAGGTAGAGAAT CAACAGAAAAAGCCTGTGGAAAACAGGATGAAGGAGGACAAAAGCAGCATCAGGGAAGCA ATCAGCAAAGCCAAGAGTACAGCAAATATAAAGACAGAACAGGAAGGTGAGGCATCTGAG AAGAGCTTGCATCTGAGCCCACAGCATATCACACACCAGACTATGCCTATAGGACAGAGA GGCAGTGAGCAAGGCAAACGTGTGGAGAACATTAATGGAACCTCCTACCCTAGTCTACAG CAGAAAACCAATGCTGTTAAGAAATTACATAAATGTGATGAATGTGGGAAATCCTTCAAA TATAATTCCCGCCTTGTTCAACATAAAATTATGCACACTGGGGAAAAGCGCTATGAATGT GATGACTGTGGAGGGACTTTCCGGAGCAGCTCGAGCCTTCGGGTCCACAAACGGATCCAC ACTGGGGAGAAGCCGTACAAGTGTGAGGAATGTGGGAAAGCCTACATGTCCTACTCCAGC CTTATAAACCACAAAAGCACCCATTCTGGGGAGAAGAACTGTAAATGTGATGAATGTGGA AAATCCTTCAATTATAGCTCTGTTCTGGACCAGCATAAAAGGATCCACACTGGGGAGAAG CCCTATGAATGTGGTGAGTGTGGGAAGGCCTTCAGGAACAGCTCTGGGCTCAGAGTCCAC AAAAGGATCCACACGGGGGAGAAGCCCTATGAATGCGACATCTGTGGGAAAACCTTCAGT AACAGCTCTGGCCTTAGGGTCCATAAAAGGATCCACACAGGTGAGAAACCTTACGAATGT GATGAGTGTGGGAAGGCCTTCATTACTTGTAGAACACTTCTCAACCATAAAAGCATCCAC TTTGGAGATAAACCCTATAAATGTGATGAGTGTGAGAAATCTTTTAATTATAGCTCTCTT CTCATTCAGCATAAAGTCATCCACACTGGAGAGAAACCTTATGAATGTGATGAATGTGGG AAGGCTTTCAGGAACAGCTCAGGCCTCATAGTGCATAAAAGGATCCACACAGGAGAGAAA CCTTACAAGTGTGATGTCTGTGGCAAAGCATTCAGCTATAGCTCAGGCCTCGCAGTCCAT AAAAGCATTCACCCTGGGAAGAAAGCCCATGAATGTAAGGAGTGTGGGAAATCCTTTAGT TATAACTCACTACTTCTTCAACACAGAACTATTCATACCGGAGAGAGACCTTATGTATGT GATGTGTGTGGGAAAACGTTCAGAAACAATGCAGGCCTCAAAGTCCACAGGAGGCTCCAT ACTGGGGAAAAACCATATAAGTGTGATGTGTGTGGGAAAGCCTATATCTCACGCTCTAGC CTTAAAAATCACAAAGGAATCCACCTTGGGGAGAAGCCCTATAAATGTAGCTATTGTGAG AAATCCTTCAACTACAGCTCTGCCCTTGAACAGCATAAAAGGATTCATACCAGGGAAAAA CCCTTTGGGTGTGATGAGTGTGGTAAAGCTTTCAGAAATAATTCTGGCCTTAAAGTACAT AAACGAATCCACACTGGGGAACGACCTTACAAATGTGAAGAATGTGGGAAAGCATACATC TCTCTCTCGAGCCTTATAAATCATAAAAGTGTACACCCTGGGGAGAAGCCCTTTAAGTGT GACGAGTGTGAGAAGGCCTTCATCACATACCGAACCCTTACAAACCACAAAAAAGTTCAT CTTGGGGAGAAGCCCTACAAATGTGATGTGTGTGAGAAATCTTTTAATTACACATCGCTC CTTTCTCAGCACAGAAGGGTCCACACTAGAGAGAAACCCTATGAATGTGACAGGTGTGAG AAGGTCTTCAGAAACAACTCAAGCCTTAAAGTTCATAAAAGAATCCATACTGGGGAGAGG CCCTATGAATGTGATGTGTGTGGAAAAGCCTACATCTCACACTCAAGCCTTATTAACCAT AAGAGTACCCACCCTGGCAAGACACCCCATACATGTGATGAATGTGGAAAAGCTTTTTTC TCAAGCAGAACTCTTATAAGCCATAAAAGAGTCCATCTTGGGGAGAAACCCTTCAAGTGT GTTGAGTGTGGGAAATCTTTCAGTTACAGCTCTCTCCTTTCTCAGCACAAGAGGATCCAC ACAGGGGAGAAACCCTATGTGTGTGATAGGTGTGGGAAGGCCTTCAGGAACAGCTCAGGC CTCACAGTGCATAAAAGGATCCACACAGGTGAGAAACCCTATGAATGTGATGAGTGTGGG AAGGCATACATCTCACACTCAAGTCTTATCAATCATAAAAGTGTCCACCAGGGGAAGCAG CCCTATAATTGTGAGTGTGGGAAATCCTTCAATTATAGATCAGTCCTTGACCAGCACAAA AGGATCCACACTGGAAAGAAGCCATACCGATGTAATGAGTGTGGTAAGGCTTTTAATATC AGATCAAATCTCACCAAGCATAAAAGAACCCATACTGGAGAGGAATCTTTAAATGTGATA TATGTGGGAAGTTATAGTGGCACATCCCAGAAGAGAACCTATGAGGGAGGGAATGCCCTG GATGGGGGCAGGATGAGGATGCCTCTGTAG >chr5_random_1|SGP_v1.0_predicted_protein_1|910_AA MWEYSLFWVVSHLKTSTEDEEPTEEYENVGNAASKWPKVEDPIPESKVGDTCVWDSKVEN QQKKPVENRMKEDKSSIREAISKAKSTANIKTEQEGEASEKSLHLSPQHITHQTMPIGQR GSEQGKRVENINGTSYPSLQQKTNAVKKLHKCDECGKSFKYNSRLVQHKIMHTGEKRYEC DDCGGTFRSSSSLRVHKRIHTGEKPYKCEECGKAYMSYSSLINHKSTHSGEKNCKCDECG KSFNYSSVLDQHKRIHTGEKPYECGECGKAFRNSSGLRVHKRIHTGEKPYECDICGKTFS NSSGLRVHKRIHTGEKPYECDECGKAFITCRTLLNHKSIHFGDKPYKCDECEKSFNYSSL LIQHKVIHTGEKPYECDECGKAFRNSSGLIVHKRIHTGEKPYKCDVCGKAFSYSSGLAVH KSIHPGKKAHECKECGKSFSYNSLLLQHRTIHTGERPYVCDVCGKTFRNNAGLKVHRRLH TGEKPYKCDVCGKAYISRSSLKNHKGIHLGEKPYKCSYCEKSFNYSSALEQHKRIHTREK PFGCDECGKAFRNNSGLKVHKRIHTGERPYKCEECGKAYISLSSLINHKSVHPGEKPFKC DECEKAFITYRTLTNHKKVHLGEKPYKCDVCEKSFNYTSLLSQHRRVHTREKPYECDRCE KVFRNNSSLKVHKRIHTGERPYECDVCGKAYISHSSLINHKSTHPGKTPHTCDECGKAFF SSRTLISHKRVHLGEKPFKCVECGKSFSYSSLLSQHKRIHTGEKPYVCDRCGKAFRNSSG LTVHKRIHTGEKPYECDECGKAYISHSSLINHKSVHQGKQPYNCECGKSFNYRSVLDQHK RIHTGKKPYRCNECGKAFNIRSNLTKHKRTHTGEESLNVIYVGSYSGTSQKRTYEGGNAL DGGRMRMPL* # Gene 2 (Forward). 6 exons. 438 aa. Score = 24.86 First 64341 64389 -6.01 + 0 1 -0.47 5.38 0.96 -17.15 AA 1: 17 chr5_random_2 Internal 73615 73962 16.80 + 2 1 6.74 3.11 7.37 22.54 AA 17:133 chr5_random_2 Internal 76368 76643 11.54 + 2 1 5.53 4.55 11.00 -35.83 AA 133:225 chr5_random_2 Internal 113387 113407 2.40 + 2 1 4.93 3.39 2.33 -7.35 AA 225:232 chr5_random_2 Internal 114936 115523 8.10 + 2 1 1.13 1.41 23.74 -85.67 AA 232:428 chr5_random_2 Terminal 117770 117801 -7.98 + 2 0 2.90 0.00 1.14 -10.15 AA 428:438 chr5_random_2 >chr5_random_2|SGP_v1.0_predicted_cDNA_2|1314_NN ATGGCTCTCATGCTCAGTTTGGTTCTGAGTCTCCTCAAGCTGGGATCAGGGCAGTGGCAG GTGTTTGGGCCAGACAAGCCTGTCCAGGCCTTGGTGGGGGAGGACGCAGCATTCTCCTGT TTCCTGTCTCCTAAAACCAATGCAGAGGCCATGGAAGTGCGGTTCTTCAGGGGCCAGTTC TCTAGCGTGGTCCACCTCTACAGGGACGGGAAGGACCAGCCATTTATGCAGATGCCACAG TATCAAGGCAGGACAAAACTGGTGAAGGATTCTATTGCGGAGGGGCGCATCTCTCTGAGG CTGGAAAACATTACTGTGTTGGATGCTGGCCTCTATGGGTGCAGGATTAGTTCCCAGTCT TACTACCAGAAGGCCATCTGGGAGCTACAGGTGTCAGCACTGGGCTCAGTTCCTCTCATT TCCATCACGGGATATGTTGATAGAGACATCCAGCTACTCTGTCAGTCCTCGGGCTGGTTC CCCCGGCCCACAGCGAAGTGGAAAGGTCCACAAGGACAGGATTTGTCCACAGACTCCAGG ACAAACAGAGACATGCATGGCCTGTTTGATGTGGAGATCTCTCTGACCGTCCAAGAGAAC GCCGGGAGCATATCCTGTTCCATGCGGCATGCTCATCTGAGCCGAGAGGTGGAATCCAGG GTACAGATAGGAGGGAAAATCCAGGCGGAACTGGTGGAGGTGACTCTGGATCCAGAGACG GCTCACCCGAAGCTCTGCGTTTCTGATCTGAAAACTGTAACCGAGAGAAAAGCTCCCCAG GAGGTGCCTCACTCTGAGAAGAGATTTAAAAGGAAGAGTGTGGTGGCTTCTCAGAGTTTC CAAGCAGGGAAACATTACTGGGAGGTGGACGGAGGACACAATAAAAGGTGGCGCGTGGGA GTGTGCCGGGATGATGTGGACAGGAGGAAGGAGTACGTGACTTTGTCTCCCGATCATGGG TACTGGGTCCTCAGACTGAATGGAGAACATTTGTATTTCACATTAAATCCCCGTTTTATC AGCGTCTTCCCCAGGACCCCACCTACAAAAATAGGGGTCTTCCTGGACTATGAGTGTGGG ACCATCTCCTTCTTCAACATAAATGACCAGTCCCTTATTTATACCCTGACATGTCGGTTT GAAGGCTTATTGAGGCCCTACATTGAGTATCCGTCCTATAATGAGCAAAATGGAACTCCC ATAGTCATCTGCCCAGTCACCCAGGAATCAGAGAAAGAGGCCTCTTGGCAAAGGGCCTCT GCAATCCCAGAGACAAGCAACATGCTGGTAGAGTGTGTCTTAAAGCAGCTGTAG >chr5_random_2|SGP_v1.0_predicted_protein_2|438_AA MALMLSLVLSLLKLGSGQWQVFGPDKPVQALVGEDAAFSCFLSPKTNAEAMEVRFFRGQF SSVVHLYRDGKDQPFMQMPQYQGRTKLVKDSIAEGRISLRLENITVLDAGLYGCRISSQS YYQKAIWELQVSALGSVPLISITGYVDRDIQLLCQSSGWFPRPTAKWKGPQGQDLSTDSR TNRDMHGLFDVEISLTVQENAGSISCSMRHAHLSREVESRVQIGGKIQAELVEVTLDPET AHPKLCVSDLKTVTERKAPQEVPHSEKRFKRKSVVASQSFQAGKHYWEVDGGHNKRWRVG VCRDDVDRRKEYVTLSPDHGYWVLRLNGEHLYFTLNPRFISVFPRTPPTKIGVFLDYECG TISFFNINDQSLIYTLTCRFEGLLRPYIEYPSYNEQNGTPIVICPVTQESEKEASWQRAS AIPETSNMLVECVLKQL* # Gene 3 (Reverse). 2 exons. 161 aa. Score = 18.88 Terminal 132220 132483 18.67 - 0 0 0.00 2.77 16.94 19.80 AA 74:161 chr5_random_3 First 135567 135785 0.21 - 0 0 -2.22 3.95 9.25 -24.22 AA 1: 73 chr5_random_3 >chr5_random_3|SGP_v1.0_predicted_cDNA_3|483_NN ATGGTGGAGGCGGTGGATCTGGGCAAAGACCCCAACGGGCCCAACCATTCCTCGATTCTG TTCACCAGGGAGGACGGCAACTCTAGGTCCTTATACCTGCTGCCCAGCCCAGCCAAGCAG CTGCTGCACCACTCGGTGCAGGAACCCAGGCCACACCGCTGGCCCAGCCTGGGGACGCCT CCAGCAGCTTTGTTGTCTGCGCAGTGCGTCCCGGACCGCGGGTGGGAGCTTGCCATTAAG ATCATTCGGCAGTTAATGGAAAAATTTAACTTGGATCTACCAACAGTTACACAGGCCTTC TTAAAAAATAATGGTGAGTTGGAGGCTACTTCCTCCTTCTTAGCGGCTGGTCAGAGAGCT GATAGATACCCCATTTGGTCCCAACAAGGTGACATAGATCTGCAAAAAGATGATGAGGAT ACCAGAGATGCATTGGTCAAAAAACTTAGTGCTCAGAATGTAGCTTGGAGGATTGAGTTT TAA >chr5_random_3|SGP_v1.0_predicted_protein_3|161_AA MVEAVDLGKDPNGPNHSSILFTREDGNSRSLYLLPSPAKQLLHHSVQEPRPHRWPSLGTP PAALLSAQCVPDRGWELAIKIIRQLMEKFNLDLPTVTQAFLKNNGELEATSSFLAAGQRA DRYPIWSQQGDIDLQKDDEDTRDALVKKLSAQNVAWRIEF*